Wall clock time and date at job start Tue Mar 31 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99823 * 2 1 4 4 C 1.46896 * 111.00286 * 123.95345 * 2 1 3 5 5 H 1.09007 * 109.47050 * 294.80519 * 4 2 1 6 6 C 1.50694 * 109.47437 * 174.80708 * 4 2 1 7 7 O 1.21284 * 119.99708 * 332.34946 * 6 4 2 8 8 N 1.34775 * 120.00233 * 152.35168 * 6 4 2 9 9 C 1.47029 * 125.64871 * 0.02562 * 8 6 4 10 10 C 1.54324 * 107.26959 * 181.02317 * 9 8 6 11 11 C 1.55154 * 102.94350 * 22.19082 * 10 9 8 12 12 H 1.09002 * 111.00343 * 82.61113 * 11 10 9 13 13 N 1.46500 * 111.00529 * 206.42160 * 11 10 9 14 14 C 1.36935 * 120.00326 * 273.55296 * 13 11 10 15 15 H 1.08004 * 120.00025 * 359.97438 * 14 13 11 16 16 C 1.38812 * 120.00109 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00248 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47303 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47140 * 119.99822 * 18 16 14 21 21 H 1.48495 * 109.47442 * 239.99744 * 18 16 14 22 22 C 1.47425 * 125.64849 * 179.71504 * 8 6 4 23 23 C 1.50699 * 109.47188 * 54.80260 * 4 2 1 24 24 C 1.38235 * 120.00475 * 227.26815 * 23 4 2 25 25 C 1.38238 * 120.00445 * 179.97438 * 24 23 4 26 26 C 1.38232 * 119.99510 * 0.06968 * 25 24 23 27 27 C 1.38232 * 120.00309 * 359.88504 * 26 25 24 28 28 C 1.38231 * 119.99955 * 0.09089 * 27 26 25 29 29 H 1.09000 * 109.47112 * 299.99791 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00329 * 1 2 3 31 31 H 1.09005 * 109.47163 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46998 * 181.58697 * 3 2 1 33 33 H 1.09008 * 109.46988 * 301.58823 * 3 2 1 34 34 H 1.09000 * 109.47195 * 61.58516 * 3 2 1 35 35 H 1.08995 * 109.87824 * 300.44070 * 9 8 6 36 36 H 1.08996 * 109.87815 * 61.60431 * 9 8 6 37 37 H 1.09002 * 110.71808 * 140.55877 * 10 9 8 38 38 H 1.09001 * 110.71559 * 263.82535 * 10 9 8 39 39 H 0.96999 * 120.00075 * 93.54432 * 13 11 10 40 40 H 0.97001 * 120.00174 * 180.02562 * 17 16 14 41 41 H 1.09001 * 110.36811 * 274.74563 * 22 8 6 42 42 H 1.08993 * 110.36707 * 37.07205 * 22 8 6 43 43 H 1.08004 * 119.99435 * 359.70053 * 24 23 4 44 44 H 1.07994 * 119.99761 * 179.97438 * 25 24 23 45 45 H 1.07998 * 119.99822 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.00213 * 180.11819 * 27 26 25 47 47 H 1.08000 * 119.99889 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 1 1.7232 -0.2679 2.0681 6 6 3.4964 -0.8513 1.0341 7 8 4.0332 -0.8013 -0.0523 8 7 4.2424 -0.9833 2.1488 9 6 3.7242 -1.0572 3.5228 10 6 4.9403 -1.1786 4.4651 11 6 6.0995 -0.5973 3.6132 12 1 6.1159 0.4912 3.6667 13 7 7.3877 -1.1599 4.0258 14 6 8.0894 -0.5843 5.0512 15 1 7.6933 0.2847 5.5555 16 6 9.3103 -1.1171 5.4417 17 7 9.7932 -2.1758 4.8268 18 14 10.2678 -0.3314 6.8400 19 1 9.5143 0.8376 7.3604 20 1 10.4573 -1.3233 7.9288 21 1 11.5932 0.1164 6.3422 22 6 5.7125 -1.0841 2.1920 23 6 1.4110 -2.1549 1.1216 24 6 0.8923 -2.7000 2.2812 25 6 0.3556 -3.9738 2.2664 26 6 0.3391 -4.7031 1.0922 27 6 0.8569 -4.1578 -0.0676 28 6 1.3931 -2.8838 -0.0529 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.0846 1.3425 -0.0285 33 1 1.6230 1.9036 -0.8755 34 1 1.6691 1.8859 0.9038 35 1 3.1630 -0.1525 3.7564 36 1 3.0830 -1.9320 3.6305 37 1 4.7898 -0.5857 5.3673 38 1 5.1314 -2.2221 4.7156 39 1 7.7436 -1.9403 3.5727 40 1 10.6462 -2.5484 5.0999 41 1 6.0265 -2.1173 2.0438 42 1 6.1593 -0.4387 1.4358 43 1 0.9103 -2.1322 3.1998 44 1 -0.0492 -4.3997 3.1725 45 1 -0.0805 -5.6982 1.0805 46 1 0.8422 -4.7269 -0.9854 47 1 1.7973 -2.4575 -0.9591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970803508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:37 Heat of formation + Delta-G solvation = 25.533305 kcal Electronic energy + Delta-G solvation = -27114.881791 eV Core-core repulsion = 23491.362029 eV Total energy + Delta-G solvation = -3623.519762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62790 -39.01214 -37.64870 -36.44881 -34.16631 -32.22608 -31.35678 -31.02981 -29.56735 -28.54488 -27.56884 -26.96565 -23.90190 -23.00303 -22.95533 -22.43029 -21.31563 -20.09431 -18.91895 -17.38773 -17.28726 -17.06384 -16.21519 -15.77528 -15.54856 -15.20635 -14.66163 -14.53254 -14.33586 -14.14220 -13.68801 -13.41758 -13.38205 -13.24741 -12.98411 -12.77690 -12.64913 -12.42872 -12.22251 -12.10336 -11.99454 -11.71121 -11.61429 -11.19837 -11.15647 -11.12654 -10.87708 -10.71122 -10.32831 -10.05915 -9.84563 -9.75287 -9.04967 -8.98620 -8.81409 -8.54751 -8.40466 -7.06883 -5.84279 -3.15027 1.11212 1.27760 2.73220 2.97540 3.39227 3.44945 3.47284 3.55916 3.88983 4.46005 4.52828 4.63910 4.68254 4.86022 4.91962 4.98932 5.02427 5.07893 5.14939 5.26157 5.31686 5.32750 5.40721 5.42740 5.49003 5.53703 5.57940 5.68575 5.73317 5.77426 5.85350 5.92894 5.94941 6.12136 6.22266 6.28079 6.35851 6.38475 6.38669 6.51275 6.56731 6.72918 6.79395 6.84915 6.89112 7.63721 7.71054 8.31955 8.33978 9.44736 9.98720 10.33679 11.37961 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.003096 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.410852 B = 9040.721058 C = 9740.930891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.521 5.521 3 C 0.021 3.979 4 C 0.114 3.886 5 H 0.066 0.934 6 C 0.536 3.464 7 O -0.522 6.522 8 N -0.611 5.611 9 C 0.099 3.901 10 C -0.154 4.154 11 C 0.173 3.827 12 H 0.063 0.937 13 N -0.715 5.715 14 C -0.244 4.244 15 H 0.073 0.927 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.101 3.899 23 C -0.081 4.081 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.125 4.125 28 C -0.082 4.082 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.405 0.389 -6.867 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.245 5.245 3 C -0.127 4.127 4 C 0.002 3.998 5 H 0.083 0.917 6 C 0.322 3.678 7 O -0.397 6.397 8 N -0.346 5.346 9 C -0.025 4.025 10 C -0.195 4.195 11 C 0.061 3.939 12 H 0.081 0.919 13 N -0.355 5.355 14 C -0.375 4.375 15 H 0.091 0.909 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.022 4.022 23 C -0.082 4.082 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.143 4.143 28 C -0.100 4.100 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.891 0.324 -7.826 24.194 hybrid contribution 0.359 0.437 1.564 1.663 sum -22.532 0.761 -6.262 23.398 Atomic orbital electron populations 1.22444 0.86550 1.02637 1.00717 1.61697 1.07817 1.14032 1.40961 1.22473 1.02001 0.87653 1.00535 1.20452 0.92301 0.92992 0.94025 0.91682 1.19755 0.87819 0.76969 0.83242 1.90698 1.73180 1.49474 1.26396 1.48446 1.08149 1.71837 1.06149 1.22170 0.98086 1.00449 0.81778 1.23415 0.94856 1.03111 0.98158 1.21330 0.86566 0.96644 0.89396 0.91915 1.42266 1.17909 1.34934 1.40439 1.19245 1.00170 1.09443 1.08652 0.90940 1.24773 0.97910 0.98073 0.99886 1.69671 1.20580 1.24012 1.43419 0.86104 0.79949 0.78339 0.81672 1.20493 1.21792 1.21777 1.22568 0.78364 1.01735 0.99534 1.19330 1.00106 0.94323 0.94410 1.21049 0.98422 0.96080 0.97264 1.21074 1.00271 0.94467 0.98237 1.21198 0.99468 0.99728 0.93006 1.21200 0.99084 0.95573 0.98418 1.21144 0.96967 0.93613 0.98290 0.95618 0.90947 0.90846 0.90438 0.90798 0.95691 0.92200 0.91948 0.90723 0.90462 0.77911 0.93382 0.91309 0.90533 0.86048 0.85903 0.86126 0.85948 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.24 60.06 0.55 0.78 16 2 N -0.52 -6.18 4.16 -246.00 -1.02 -7.20 16 3 C 0.02 0.24 9.27 60.06 0.56 0.79 16 4 C 0.11 1.42 1.62 -70.02 -0.11 1.31 16 5 H 0.07 0.73 6.94 -51.92 -0.36 0.37 16 6 C 0.54 8.50 5.88 -10.99 -0.06 8.44 16 7 O -0.52 -10.01 15.91 5.55 0.09 -9.92 16 8 N -0.61 -9.58 3.32 -170.38 -0.57 -10.15 16 9 C 0.10 1.31 6.19 -3.06 -0.02 1.29 16 10 C -0.15 -2.48 6.64 -24.90 -0.17 -2.65 16 11 C 0.17 3.31 3.70 -65.66 -0.24 3.06 16 12 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 13 N -0.72 -17.32 5.28 -51.24 -0.27 -17.59 16 14 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 18 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.10 1.81 6.53 -2.41 -0.02 1.80 16 23 C -0.08 -0.95 3.46 -104.62 -0.36 -1.31 16 24 C -0.11 -1.12 8.90 -39.58 -0.35 -1.47 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -1.08 10.05 -39.59 -0.40 -1.47 16 27 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 28 C -0.08 -0.98 8.41 -39.58 -0.33 -1.32 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.69 6.23 -51.93 -0.32 0.36 16 32 H 0.08 1.05 6.43 -51.93 -0.33 0.72 16 33 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.68 7.78 -51.93 -0.40 0.28 16 36 H 0.06 0.75 6.86 -51.93 -0.36 0.39 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.39 10.03 7.71 -40.82 -0.31 9.72 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 42 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 43 H 0.12 1.05 7.53 -52.48 -0.40 0.65 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.13 1.76 7.94 -52.49 -0.42 1.35 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -31.47 378.83 -9.87 -41.34 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.51 Total: 8.80 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.00 Total: -1.03 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -1.14 Total: -61.72 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.47 -9.87 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970803508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.873 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds