Wall clock time and date at job start Tue Mar 31 2020 11:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99823 * 2 1 4 4 C 1.46896 * 111.00286 * 123.95345 * 2 1 3 5 5 H 1.09007 * 109.47050 * 294.80519 * 4 2 1 6 6 C 1.50694 * 109.47437 * 174.80708 * 4 2 1 7 7 O 1.21284 * 119.99708 * 332.34946 * 6 4 2 8 8 N 1.34775 * 120.00233 * 152.35168 * 6 4 2 9 9 C 1.47029 * 125.64871 * 0.02562 * 8 6 4 10 10 C 1.54324 * 107.26959 * 181.02317 * 9 8 6 11 11 C 1.55154 * 102.94350 * 22.19082 * 10 9 8 12 12 H 1.09002 * 111.00343 * 82.61113 * 11 10 9 13 13 N 1.46500 * 111.00529 * 206.42160 * 11 10 9 14 14 C 1.36935 * 120.00326 * 273.55296 * 13 11 10 15 15 H 1.08004 * 120.00025 * 359.97438 * 14 13 11 16 16 C 1.38812 * 120.00109 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00248 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47303 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47140 * 119.99822 * 18 16 14 21 21 H 1.48495 * 109.47442 * 239.99744 * 18 16 14 22 22 C 1.47425 * 125.64849 * 179.71504 * 8 6 4 23 23 C 1.50699 * 109.47188 * 54.80260 * 4 2 1 24 24 C 1.38235 * 120.00475 * 227.26815 * 23 4 2 25 25 C 1.38238 * 120.00445 * 179.97438 * 24 23 4 26 26 C 1.38232 * 119.99510 * 0.06968 * 25 24 23 27 27 C 1.38232 * 120.00309 * 359.88504 * 26 25 24 28 28 C 1.38231 * 119.99955 * 0.09089 * 27 26 25 29 29 H 1.09000 * 109.47112 * 299.99791 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00329 * 1 2 3 31 31 H 1.09005 * 109.47163 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46998 * 181.58697 * 3 2 1 33 33 H 1.09008 * 109.46988 * 301.58823 * 3 2 1 34 34 H 1.09000 * 109.47195 * 61.58516 * 3 2 1 35 35 H 1.08995 * 109.87824 * 300.44070 * 9 8 6 36 36 H 1.08996 * 109.87815 * 61.60431 * 9 8 6 37 37 H 1.09002 * 110.71808 * 140.55877 * 10 9 8 38 38 H 1.09001 * 110.71559 * 263.82535 * 10 9 8 39 39 H 0.96999 * 120.00075 * 93.54432 * 13 11 10 40 40 H 0.97001 * 120.00174 * 180.02562 * 17 16 14 41 41 H 1.09001 * 110.36811 * 274.74563 * 22 8 6 42 42 H 1.08993 * 110.36707 * 37.07205 * 22 8 6 43 43 H 1.08004 * 119.99435 * 359.70053 * 24 23 4 44 44 H 1.07994 * 119.99761 * 179.97438 * 25 24 23 45 45 H 1.07998 * 119.99822 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.00213 * 180.11819 * 27 26 25 47 47 H 1.08000 * 119.99889 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 1 1.7232 -0.2679 2.0681 6 6 3.4964 -0.8513 1.0341 7 8 4.0332 -0.8013 -0.0523 8 7 4.2424 -0.9833 2.1488 9 6 3.7242 -1.0572 3.5228 10 6 4.9403 -1.1786 4.4651 11 6 6.0995 -0.5973 3.6132 12 1 6.1159 0.4912 3.6667 13 7 7.3877 -1.1599 4.0258 14 6 8.0894 -0.5843 5.0512 15 1 7.6933 0.2847 5.5555 16 6 9.3103 -1.1171 5.4417 17 7 9.7932 -2.1758 4.8268 18 14 10.2678 -0.3314 6.8400 19 1 9.5143 0.8376 7.3604 20 1 10.4573 -1.3233 7.9288 21 1 11.5932 0.1164 6.3422 22 6 5.7125 -1.0841 2.1920 23 6 1.4110 -2.1549 1.1216 24 6 0.8923 -2.7000 2.2812 25 6 0.3556 -3.9738 2.2664 26 6 0.3391 -4.7031 1.0922 27 6 0.8569 -4.1578 -0.0676 28 6 1.3931 -2.8838 -0.0529 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.0846 1.3425 -0.0285 33 1 1.6230 1.9036 -0.8755 34 1 1.6691 1.8859 0.9038 35 1 3.1630 -0.1525 3.7564 36 1 3.0830 -1.9320 3.6305 37 1 4.7898 -0.5857 5.3673 38 1 5.1314 -2.2221 4.7156 39 1 7.7436 -1.9403 3.5727 40 1 10.6462 -2.5484 5.0999 41 1 6.0265 -2.1173 2.0438 42 1 6.1593 -0.4387 1.4358 43 1 0.9103 -2.1322 3.1998 44 1 -0.0492 -4.3997 3.1725 45 1 -0.0805 -5.6982 1.0805 46 1 0.8422 -4.7269 -0.9854 47 1 1.7973 -2.4575 -0.9591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970803508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:36 Heat of formation + Delta-G solvation = 5.453547 kcal Electronic energy + Delta-G solvation = -27115.752515 eV Core-core repulsion = 23491.362029 eV Total energy + Delta-G solvation = -3624.390485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70503 -40.03370 -38.84995 -37.51989 -35.95179 -33.52093 -32.71574 -31.78811 -31.05188 -29.79593 -28.55095 -28.02375 -25.68594 -24.34079 -23.81690 -23.23674 -22.29581 -21.61653 -20.06740 -19.29003 -18.41941 -18.00336 -17.44111 -16.89757 -16.57752 -16.27396 -16.14377 -15.64473 -15.43540 -15.28289 -14.93641 -14.72212 -14.64956 -14.41873 -14.20228 -13.76733 -13.69359 -13.42663 -13.27565 -13.16742 -13.12928 -13.03573 -12.88135 -12.70719 -12.55233 -12.34259 -12.09303 -11.94178 -11.91887 -11.75350 -11.64051 -11.02506 -10.96249 -9.82123 -9.70332 -9.65109 -9.38035 -9.05823 -7.95288 -5.25864 0.32606 0.51090 1.49214 1.50270 1.53258 1.60023 1.78303 2.56617 2.75941 2.99700 3.35111 3.49190 3.65142 3.68151 3.82978 3.93777 4.03662 4.13047 4.18897 4.23342 4.24743 4.31145 4.31983 4.39557 4.48003 4.59751 4.63490 4.64764 4.66249 4.73124 4.79307 4.95918 4.96097 5.00932 5.04005 5.16129 5.17828 5.21554 5.40652 5.53580 5.54243 5.58744 5.63392 5.86207 6.00095 6.09577 6.25175 6.48729 7.08860 7.31936 8.02766 8.27131 9.28327 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.003096 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.410852 B = 9040.721058 C = 9740.930891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.541 5.541 3 C 0.024 3.976 4 C 0.125 3.875 5 H 0.085 0.915 6 C 0.532 3.468 7 O -0.565 6.565 8 N -0.612 5.612 9 C 0.105 3.895 10 C -0.142 4.142 11 C 0.167 3.833 12 H 0.063 0.937 13 N -0.730 5.730 14 C -0.239 4.239 15 H 0.082 0.918 16 C -0.074 4.074 17 N -0.970 5.970 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.294 1.294 21 H -0.297 1.297 22 C 0.110 3.890 23 C -0.094 4.094 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.133 4.133 28 C -0.101 4.101 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.134 0.866 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.395 0.855 -5.104 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.266 5.266 3 C -0.123 4.123 4 C 0.014 3.986 5 H 0.103 0.897 6 C 0.321 3.679 7 O -0.443 6.443 8 N -0.346 5.346 9 C -0.018 4.018 10 C -0.183 4.183 11 C 0.057 3.943 12 H 0.081 0.919 13 N -0.369 5.369 14 C -0.370 4.370 15 H 0.100 0.900 16 C -0.267 4.267 17 N -0.620 5.620 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.225 1.225 22 C -0.014 4.014 23 C -0.095 4.095 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.151 4.151 28 C -0.120 4.120 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.163 0.837 46 H 0.152 0.848 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -25.959 0.825 -6.047 26.667 hybrid contribution 1.208 0.276 0.920 1.544 sum -24.751 1.101 -5.127 25.300 Atomic orbital electron populations 1.22441 0.84659 1.02806 1.01877 1.61649 1.09491 1.14228 1.41228 1.22418 1.00066 0.87850 1.01998 1.20367 0.89195 0.94016 0.95063 0.89737 1.20514 0.89393 0.75612 0.82400 1.90673 1.74308 1.51260 1.28038 1.48509 1.06894 1.71724 1.07443 1.22287 0.97040 1.03089 0.79340 1.23201 0.94308 1.02094 0.98688 1.21472 0.85695 0.96489 0.90600 0.91925 1.42425 1.19708 1.34667 1.40125 1.19643 1.00027 1.08991 1.08357 0.89964 1.25584 0.99309 0.99022 1.02747 1.69832 1.20886 1.25890 1.45424 0.85067 0.78192 0.77807 0.78630 1.18636 1.22079 1.22481 1.22241 0.80409 1.00331 0.98425 1.19346 1.01139 0.93997 0.95010 1.21301 0.97900 0.96623 0.97258 1.21445 0.99393 0.94081 0.99167 1.21536 0.98628 1.00754 0.92549 1.21402 0.98935 0.95061 0.99666 1.21074 0.98295 0.94729 0.97873 0.94210 0.89927 0.91168 0.93528 0.89494 0.94068 0.88980 0.89761 0.89320 0.91878 0.79448 0.94023 0.92813 0.92202 0.83981 0.83337 0.83735 0.84776 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.24 127.69 1.18 1.66 16 2 N -0.54 -12.28 4.16 -932.21 -3.88 -16.16 16 3 C 0.02 0.53 9.27 127.69 1.18 1.71 16 4 C 0.13 2.92 1.62 43.42 0.07 2.99 16 5 H 0.09 1.61 6.94 -2.38 -0.02 1.59 16 6 C 0.53 16.79 5.88 87.66 0.52 17.31 16 7 O -0.56 -22.50 15.91 -3.04 -0.05 -22.55 16 8 N -0.61 -18.70 3.32 -811.36 -2.70 -21.40 16 9 C 0.10 2.47 6.19 86.73 0.54 3.01 16 10 C -0.14 -4.31 6.64 31.78 0.21 -4.10 16 11 C 0.17 6.38 3.70 46.46 0.17 6.55 16 12 H 0.06 2.40 8.13 -2.39 -0.02 2.38 16 13 N -0.73 -35.89 5.28 -316.01 -1.67 -37.56 16 14 C -0.24 -12.76 9.98 84.03 0.84 -11.92 16 15 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 16 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 17 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 18 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 22 C 0.11 4.05 6.53 86.93 0.57 4.62 16 23 C -0.09 -2.05 3.46 -19.87 -0.07 -2.12 16 24 C -0.11 -1.93 8.90 22.27 0.20 -1.73 16 25 C -0.12 -1.86 10.05 22.27 0.22 -1.64 16 26 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 27 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 28 C -0.10 -2.40 8.41 22.27 0.19 -2.21 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.20 6.23 -2.38 -0.01 1.18 16 32 H 0.05 1.28 6.43 -2.39 -0.02 1.27 16 33 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 1.67 7.78 -2.39 -0.02 1.65 16 36 H 0.08 1.70 6.86 -2.39 -0.02 1.68 16 37 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 39 H 0.37 20.09 7.71 -92.71 -0.71 19.38 16 40 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.05 2.12 8.00 -2.39 -0.02 2.11 16 42 H 0.06 2.37 8.03 -2.39 -0.02 2.35 16 43 H 0.14 1.78 7.53 -2.91 -0.02 1.76 16 44 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 47 H 0.11 3.06 7.94 -2.91 -0.02 3.03 16 Total: -1.00 -70.24 378.83 0.99 -69.25 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.24 Total: 33.37 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.73 Total: 6.46 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -7.96 Total: -133.64 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.24 0.99 -69.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970803508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.700 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds