Wall clock time and date at job start Tue Mar 31 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99850 * 2 1 4 4 C 1.46903 * 111.00132 * 123.95414 * 2 1 3 5 5 H 1.09003 * 109.47116 * 300.57759 * 4 2 1 6 6 C 1.50696 * 109.47040 * 60.57585 * 4 2 1 7 7 O 1.21280 * 120.00204 * 27.95093 * 6 4 2 8 8 N 1.34777 * 119.99944 * 207.94380 * 6 4 2 9 9 C 1.47424 * 125.64884 * 359.97438 * 8 6 4 10 10 C 1.54909 * 104.83101 * 155.90373 * 9 8 6 11 11 C 1.55155 * 101.58145 * 37.01402 * 10 9 8 12 12 H 1.08998 * 110.72782 * 83.03518 * 11 10 9 13 13 N 1.46494 * 110.72282 * 206.13259 * 11 10 9 14 14 C 1.36936 * 120.00190 * 273.54909 * 13 11 10 15 15 H 1.08001 * 119.99955 * 359.97438 * 14 13 11 16 16 C 1.38818 * 120.00241 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99739 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99842 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47423 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46944 * 119.99757 * 18 16 14 21 21 H 1.48504 * 109.47112 * 239.99492 * 18 16 14 22 22 C 1.47017 * 125.64711 * 180.02562 * 8 6 4 23 23 C 1.50706 * 109.47030 * 180.57980 * 4 2 1 24 24 C 1.38235 * 119.99592 * 313.70238 * 23 4 2 25 25 C 1.38236 * 119.99776 * 179.81288 * 24 23 4 26 26 C 1.38242 * 119.99863 * 0.39956 * 25 24 23 27 27 C 1.38242 * 119.99828 * 359.85382 * 26 25 24 28 28 C 1.38226 * 119.99928 * 359.96136 * 27 26 25 29 29 H 1.09001 * 109.47029 * 299.99907 * 1 2 3 30 30 H 1.08991 * 109.47032 * 60.00232 * 1 2 3 31 31 H 1.09002 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47200 * 183.76651 * 3 2 1 33 33 H 1.08997 * 109.47641 * 303.76873 * 3 2 1 34 34 H 1.09001 * 109.46999 * 63.77094 * 3 2 1 35 35 H 1.08998 * 110.36469 * 37.06810 * 9 8 6 36 36 H 1.09000 * 110.36923 * 274.74364 * 9 8 6 37 37 H 1.09001 * 111.00943 * 278.93510 * 10 9 8 38 38 H 1.09001 * 111.00252 * 155.08204 * 10 9 8 39 39 H 0.97001 * 120.00366 * 93.26386 * 13 11 10 40 40 H 0.97002 * 119.99509 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.88613 * 61.61218 * 22 8 6 42 42 H 1.08996 * 109.88599 * 300.44477 * 22 8 6 43 43 H 1.07998 * 120.00431 * 0.02562 * 24 23 4 44 44 H 1.07999 * 120.00084 * 180.23139 * 25 24 23 45 45 H 1.07991 * 119.99955 * 179.83444 * 26 25 24 46 46 H 1.07995 * 119.99569 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.00012 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.6376 -0.3262 2.0686 6 6 1.5239 -2.1941 1.0429 7 8 1.2791 -2.6814 -0.0404 8 7 1.3743 -2.9300 2.1621 9 6 1.6355 -2.4660 3.5368 10 6 0.7656 -3.3797 4.4357 11 6 0.8812 -4.7412 3.7006 12 1 1.7974 -5.2576 3.9870 13 7 -0.2899 -5.5782 3.9725 14 6 -0.3167 -6.3782 5.0835 15 1 0.5258 -6.3925 5.7591 16 6 -1.4267 -7.1710 5.3414 17 7 -2.4536 -7.1532 4.5183 18 14 -1.4628 -8.2629 6.8566 19 1 -0.1956 -8.1010 7.6138 20 1 -2.6073 -7.8745 7.7194 21 1 -1.6145 -9.6806 6.4416 22 6 0.9245 -4.3287 2.2140 23 6 3.5019 -0.7316 1.1122 24 6 4.1788 -0.9678 -0.0697 25 6 5.5605 -0.9324 -0.0938 26 6 6.2655 -0.6690 1.0658 27 6 5.5886 -0.4380 2.2488 28 6 4.2069 -0.4696 2.2721 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.0830 1.3432 -0.0675 33 1 1.5924 1.9154 -0.8542 34 1 1.7016 1.8734 0.9219 35 1 1.3337 -1.4247 3.6494 36 1 2.6906 -2.5849 3.7832 37 1 -0.2682 -3.0349 4.4592 38 1 1.1776 -3.4434 5.4429 39 1 -1.0482 -5.5626 3.3677 40 1 -3.2293 -7.7069 4.6987 41 1 1.6260 -4.9641 1.6734 42 1 -0.0700 -4.4149 1.7764 43 1 3.6281 -1.1766 -0.9749 44 1 6.0893 -1.1133 -1.0180 45 1 7.3450 -0.6440 1.0475 46 1 6.1395 -0.2326 3.1548 47 1 3.6781 -0.2895 3.1964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970803547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:40 Heat of formation + Delta-G solvation = 26.518453 kcal Electronic energy + Delta-G solvation = -27129.261220 eV Core-core repulsion = 23505.784178 eV Total energy + Delta-G solvation = -3623.477043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61911 -39.02230 -37.65026 -36.43946 -34.15887 -32.22226 -31.35682 -31.03647 -29.54662 -28.56427 -27.55694 -26.95085 -23.89894 -23.00174 -22.94453 -22.43231 -21.37555 -20.03437 -18.94348 -17.46704 -17.26429 -17.06638 -16.03126 -15.96990 -15.47244 -15.15612 -14.60665 -14.56779 -14.52117 -13.97023 -13.62381 -13.52680 -13.45051 -13.24055 -12.94620 -12.67794 -12.57906 -12.42915 -12.36011 -12.08328 -11.87359 -11.68641 -11.64559 -11.19471 -11.16500 -11.12774 -10.87507 -10.72165 -10.36280 -10.07647 -9.84081 -9.74563 -9.05895 -8.99530 -8.81920 -8.52681 -8.39381 -7.06469 -5.84135 -3.14839 1.10417 1.26740 2.75043 2.98870 3.39261 3.44906 3.47324 3.55638 3.89598 4.46685 4.52748 4.62003 4.67490 4.84630 4.91399 4.98050 5.01758 5.08318 5.17016 5.26976 5.32010 5.33887 5.43212 5.44375 5.48249 5.54211 5.57099 5.69402 5.73014 5.77364 5.89498 5.91978 5.93694 6.12159 6.23489 6.26964 6.34942 6.37270 6.39029 6.53028 6.56730 6.74042 6.81016 6.84392 6.88111 7.63858 7.71587 8.32584 8.35341 9.44790 9.98991 10.33708 11.38131 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.003100 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.332368 B = 9029.629624 C = 9809.063815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.521 5.521 3 C 0.025 3.975 4 C 0.113 3.887 5 H 0.066 0.934 6 C 0.535 3.465 7 O -0.522 6.522 8 N -0.610 5.610 9 C 0.097 3.903 10 C -0.154 4.154 11 C 0.172 3.828 12 H 0.064 0.936 13 N -0.716 5.716 14 C -0.244 4.244 15 H 0.073 0.927 16 C -0.010 4.010 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.103 3.897 23 C -0.080 4.080 24 C -0.082 4.082 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.123 4.123 28 C -0.109 4.109 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.420 19.037 -6.138 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.123 4.123 4 C 0.001 3.999 5 H 0.084 0.916 6 C 0.321 3.679 7 O -0.397 6.397 8 N -0.345 5.345 9 C -0.026 4.026 10 C -0.196 4.196 11 C 0.061 3.939 12 H 0.082 0.918 13 N -0.357 5.357 14 C -0.375 4.375 15 H 0.091 0.909 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.020 4.020 23 C -0.081 4.081 24 C -0.100 4.100 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.152 0.848 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.445 18.449 -7.086 24.480 hybrid contribution -0.649 -0.155 1.528 1.668 sum 13.797 18.294 -5.558 23.578 Atomic orbital electron populations 1.22478 0.86250 1.03339 1.00649 1.61700 1.08503 1.13380 1.40941 1.22436 1.01341 0.87941 1.00579 1.20471 0.92517 0.92802 0.94067 0.91625 1.19750 0.78034 0.86889 0.83207 1.90700 1.50089 1.72148 1.26787 1.48471 1.65950 1.13899 1.06181 1.22450 0.99932 0.98534 0.81687 1.23569 0.99731 0.97646 0.98607 1.21177 0.92699 0.90331 0.89734 0.91778 1.42372 1.15773 1.48665 1.28847 1.19255 1.01146 1.16826 1.00300 0.90900 1.24780 0.96579 1.00393 0.98930 1.69678 1.06840 1.43435 1.37750 0.86103 0.77310 0.80335 0.82309 1.20470 1.21826 1.21772 1.22274 1.00161 0.80443 0.99113 1.19340 0.92614 1.01769 0.94347 1.21149 0.93939 0.96627 0.98277 1.21201 0.94182 1.00526 0.98418 1.21195 0.99853 0.99459 0.92963 1.21067 0.94019 1.00847 0.98160 1.21037 0.94454 0.99936 0.97321 0.95655 0.90766 0.90404 0.90892 0.90958 0.95618 0.91734 0.91517 0.90628 0.90511 0.77948 0.93394 0.91637 0.91084 0.84828 0.85978 0.86163 0.85932 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.28 60.06 0.56 0.80 16 2 N -0.52 -6.32 4.13 -246.00 -1.02 -7.34 16 3 C 0.02 0.23 9.17 60.06 0.55 0.78 16 4 C 0.11 1.42 1.63 -70.01 -0.11 1.31 16 5 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 6 C 0.53 8.58 5.86 -10.99 -0.06 8.52 16 7 O -0.52 -10.15 15.97 5.56 0.09 -10.06 16 8 N -0.61 -9.61 3.33 -170.53 -0.57 -10.18 16 9 C 0.10 1.28 6.68 -2.53 -0.02 1.26 16 10 C -0.15 -2.47 6.77 -24.58 -0.17 -2.64 16 11 C 0.17 3.28 3.59 -66.10 -0.24 3.05 16 12 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 13 N -0.72 -17.37 5.25 -51.65 -0.27 -17.64 16 14 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 18 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.10 1.86 6.62 -3.06 -0.02 1.84 16 23 C -0.08 -0.93 3.56 -104.62 -0.37 -1.30 16 24 C -0.08 -0.96 8.37 -39.58 -0.33 -1.29 16 25 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.11 -1.08 9.67 -39.59 -0.38 -1.47 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.12 6.35 -51.93 -0.33 0.79 16 32 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.71 6.78 -51.93 -0.35 0.36 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.39 10.10 7.51 -40.82 -0.31 9.79 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.40 7.69 -51.93 -0.40 1.00 16 43 H 0.13 1.74 7.91 -52.49 -0.42 1.33 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.12 1.01 7.99 -52.49 -0.42 0.59 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -31.63 379.95 -9.88 -41.51 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.50 Total: 8.81 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.04 Total: -0.79 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.13 Total: -62.03 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.63 -9.88 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970803547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.030 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds