Wall clock time and date at job start Tue Mar 31 2020 11:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99850 * 2 1 4 4 C 1.46903 * 111.00132 * 123.95414 * 2 1 3 5 5 H 1.09003 * 109.47116 * 300.57759 * 4 2 1 6 6 C 1.50696 * 109.47040 * 60.57585 * 4 2 1 7 7 O 1.21280 * 120.00204 * 27.95093 * 6 4 2 8 8 N 1.34777 * 119.99944 * 207.94380 * 6 4 2 9 9 C 1.47424 * 125.64884 * 359.97438 * 8 6 4 10 10 C 1.54909 * 104.83101 * 155.90373 * 9 8 6 11 11 C 1.55155 * 101.58145 * 37.01402 * 10 9 8 12 12 H 1.08998 * 110.72782 * 83.03518 * 11 10 9 13 13 N 1.46494 * 110.72282 * 206.13259 * 11 10 9 14 14 C 1.36936 * 120.00190 * 273.54909 * 13 11 10 15 15 H 1.08001 * 119.99955 * 359.97438 * 14 13 11 16 16 C 1.38818 * 120.00241 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99739 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99842 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47423 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46944 * 119.99757 * 18 16 14 21 21 H 1.48504 * 109.47112 * 239.99492 * 18 16 14 22 22 C 1.47017 * 125.64711 * 180.02562 * 8 6 4 23 23 C 1.50706 * 109.47030 * 180.57980 * 4 2 1 24 24 C 1.38235 * 119.99592 * 313.70238 * 23 4 2 25 25 C 1.38236 * 119.99776 * 179.81288 * 24 23 4 26 26 C 1.38242 * 119.99863 * 0.39956 * 25 24 23 27 27 C 1.38242 * 119.99828 * 359.85382 * 26 25 24 28 28 C 1.38226 * 119.99928 * 359.96136 * 27 26 25 29 29 H 1.09001 * 109.47029 * 299.99907 * 1 2 3 30 30 H 1.08991 * 109.47032 * 60.00232 * 1 2 3 31 31 H 1.09002 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47200 * 183.76651 * 3 2 1 33 33 H 1.08997 * 109.47641 * 303.76873 * 3 2 1 34 34 H 1.09001 * 109.46999 * 63.77094 * 3 2 1 35 35 H 1.08998 * 110.36469 * 37.06810 * 9 8 6 36 36 H 1.09000 * 110.36923 * 274.74364 * 9 8 6 37 37 H 1.09001 * 111.00943 * 278.93510 * 10 9 8 38 38 H 1.09001 * 111.00252 * 155.08204 * 10 9 8 39 39 H 0.97001 * 120.00366 * 93.26386 * 13 11 10 40 40 H 0.97002 * 119.99509 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.88613 * 61.61218 * 22 8 6 42 42 H 1.08996 * 109.88599 * 300.44477 * 22 8 6 43 43 H 1.07998 * 120.00431 * 0.02562 * 24 23 4 44 44 H 1.07999 * 120.00084 * 180.23139 * 25 24 23 45 45 H 1.07991 * 119.99955 * 179.83444 * 26 25 24 46 46 H 1.07995 * 119.99569 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.00012 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.6376 -0.3262 2.0686 6 6 1.5239 -2.1941 1.0429 7 8 1.2791 -2.6814 -0.0404 8 7 1.3743 -2.9300 2.1621 9 6 1.6355 -2.4660 3.5368 10 6 0.7656 -3.3797 4.4357 11 6 0.8812 -4.7412 3.7006 12 1 1.7974 -5.2576 3.9870 13 7 -0.2899 -5.5782 3.9725 14 6 -0.3167 -6.3782 5.0835 15 1 0.5258 -6.3925 5.7591 16 6 -1.4267 -7.1710 5.3414 17 7 -2.4536 -7.1532 4.5183 18 14 -1.4628 -8.2629 6.8566 19 1 -0.1956 -8.1010 7.6138 20 1 -2.6073 -7.8745 7.7194 21 1 -1.6145 -9.6806 6.4416 22 6 0.9245 -4.3287 2.2140 23 6 3.5019 -0.7316 1.1122 24 6 4.1788 -0.9678 -0.0697 25 6 5.5605 -0.9324 -0.0938 26 6 6.2655 -0.6690 1.0658 27 6 5.5886 -0.4380 2.2488 28 6 4.2069 -0.4696 2.2721 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.0830 1.3432 -0.0675 33 1 1.5924 1.9154 -0.8542 34 1 1.7016 1.8734 0.9219 35 1 1.3337 -1.4247 3.6494 36 1 2.6906 -2.5849 3.7832 37 1 -0.2682 -3.0349 4.4592 38 1 1.1776 -3.4434 5.4429 39 1 -1.0482 -5.5626 3.3677 40 1 -3.2293 -7.7069 4.6987 41 1 1.6260 -4.9641 1.6734 42 1 -0.0700 -4.4149 1.7764 43 1 3.6281 -1.1766 -0.9749 44 1 6.0893 -1.1133 -1.0180 45 1 7.3450 -0.6440 1.0475 46 1 6.1395 -0.2326 3.1548 47 1 3.6781 -0.2895 3.1964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970803547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:39 Heat of formation + Delta-G solvation = 6.240539 kcal Electronic energy + Delta-G solvation = -27130.140537 eV Core-core repulsion = 23505.784178 eV Total energy + Delta-G solvation = -3624.356359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70243 -40.03046 -38.85515 -37.52841 -35.94317 -33.51888 -32.71071 -31.76510 -31.02609 -29.82721 -28.55860 -28.02675 -25.68376 -24.32797 -23.81974 -23.21892 -22.35825 -21.53859 -20.09364 -19.34191 -18.42264 -18.00377 -17.20770 -17.07145 -16.59228 -16.26262 -16.18763 -15.56510 -15.34763 -15.28061 -15.15873 -14.89314 -14.42878 -14.26631 -14.20615 -13.81379 -13.58902 -13.54086 -13.20427 -13.19711 -13.11236 -12.99506 -12.90752 -12.70913 -12.56779 -12.34212 -12.09020 -11.93393 -11.89858 -11.74737 -11.70783 -11.02123 -10.96200 -9.79537 -9.72777 -9.62808 -9.39487 -9.05465 -7.95227 -5.25848 0.34451 0.53272 1.49368 1.50241 1.53663 1.60187 1.79549 2.56640 2.76466 2.99974 3.35952 3.47836 3.63956 3.73073 3.79672 3.86970 4.03853 4.12931 4.20891 4.24739 4.27380 4.32466 4.36822 4.37873 4.49792 4.58713 4.60884 4.64846 4.65810 4.74781 4.81197 4.93476 4.96359 4.99765 5.05190 5.15059 5.19567 5.22838 5.41931 5.53698 5.56256 5.60138 5.65281 5.85768 5.98648 6.11483 6.25120 6.48763 7.09420 7.31532 8.02725 8.26717 9.28588 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.003100 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.332368 B = 9029.629624 C = 9809.063815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.030 3.970 4 C 0.124 3.876 5 H 0.084 0.916 6 C 0.531 3.469 7 O -0.566 6.566 8 N -0.611 5.611 9 C 0.105 3.895 10 C -0.143 4.143 11 C 0.167 3.833 12 H 0.070 0.930 13 N -0.732 5.732 14 C -0.237 4.237 15 H 0.085 0.915 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.975 3.025 19 H -0.260 1.260 20 H -0.295 1.295 21 H -0.298 1.298 22 C 0.112 3.888 23 C -0.094 4.094 24 C -0.101 4.101 25 C -0.133 4.133 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.111 4.111 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.109 0.891 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.150 0.850 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.146 21.204 -4.082 27.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.117 4.117 4 C 0.013 3.987 5 H 0.101 0.899 6 C 0.319 3.681 7 O -0.445 6.445 8 N -0.345 5.345 9 C -0.017 4.017 10 C -0.184 4.184 11 C 0.057 3.943 12 H 0.088 0.912 13 N -0.371 5.371 14 C -0.369 4.369 15 H 0.103 0.897 16 C -0.269 4.269 17 N -0.622 5.622 18 Si 0.804 3.196 19 H -0.184 1.184 20 H -0.222 1.222 21 H -0.225 1.225 22 C -0.012 4.012 23 C -0.094 4.094 24 C -0.120 4.120 25 C -0.150 4.150 26 C -0.134 4.134 27 C -0.140 4.140 28 C -0.129 4.129 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.152 0.848 45 H 0.163 0.837 46 H 0.168 0.832 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 17.240 20.671 -5.005 27.378 hybrid contribution -1.393 -0.781 0.801 1.786 sum 15.847 19.890 -4.204 25.776 Atomic orbital electron populations 1.22406 0.86453 1.01470 1.02012 1.61655 1.08507 1.15056 1.41311 1.22439 1.01195 0.86402 1.01700 1.20391 0.93387 0.90040 0.94917 0.89892 1.20530 0.76905 0.88249 0.82398 1.90671 1.51915 1.73356 1.28519 1.48549 1.65665 1.12778 1.07553 1.22596 1.00757 0.99343 0.79041 1.23362 0.99616 0.95751 0.99653 1.21363 0.90930 0.91286 0.90678 0.91195 1.42557 1.16821 1.49559 1.28175 1.19677 1.00915 1.15824 1.00472 0.89704 1.25609 0.96653 1.02563 1.02044 1.69846 1.07556 1.44915 1.39926 0.85052 0.77727 0.77846 0.78988 1.18435 1.22234 1.22504 1.21956 0.98641 0.82328 0.98274 1.19324 0.91804 1.03246 0.95061 1.21063 0.94849 0.98261 0.97779 1.21395 0.93519 1.00418 0.99717 1.21539 1.01202 0.98175 0.92471 1.21439 0.93819 0.99561 0.99134 1.21284 0.95069 0.99311 0.97247 0.94233 0.89477 0.93793 0.90994 0.89911 0.94315 0.88643 0.88928 0.92440 0.88888 0.79674 0.94089 0.92388 0.93771 0.87333 0.84811 0.83690 0.83229 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.28 127.69 1.19 1.76 16 2 N -0.54 -12.75 4.13 -932.20 -3.85 -16.60 16 3 C 0.03 0.50 9.17 127.69 1.17 1.67 16 4 C 0.12 2.95 1.63 43.42 0.07 3.02 16 5 H 0.08 1.64 6.39 -2.39 -0.02 1.63 16 6 C 0.53 17.08 5.86 87.66 0.51 17.59 16 7 O -0.57 -23.08 15.97 -3.03 -0.05 -23.13 16 8 N -0.61 -18.88 3.33 -811.81 -2.70 -21.58 16 9 C 0.10 2.43 6.68 86.86 0.58 3.01 16 10 C -0.14 -4.31 6.77 31.99 0.22 -4.10 16 11 C 0.17 6.31 3.59 46.18 0.17 6.48 16 12 H 0.07 2.58 8.12 -2.39 -0.02 2.56 16 13 N -0.73 -36.12 5.25 -317.33 -1.67 -37.78 16 14 C -0.24 -12.67 9.98 84.04 0.84 -11.84 16 15 H 0.09 4.24 7.83 -2.91 -0.02 4.22 16 16 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 17 N -0.97 -59.38 13.06 21.65 0.28 -59.09 16 18 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 22 C 0.11 4.15 6.62 86.73 0.57 4.72 16 23 C -0.09 -2.00 3.56 -19.86 -0.07 -2.07 16 24 C -0.10 -2.33 8.37 22.27 0.19 -2.14 16 25 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 26 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 27 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 28 C -0.11 -1.79 9.67 22.27 0.22 -1.58 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.32 6.35 -2.39 -0.02 1.30 16 32 H 0.07 1.24 6.34 -2.38 -0.02 1.22 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 1.70 6.78 -2.39 -0.02 1.69 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.37 20.28 7.51 -92.71 -0.70 19.59 16 40 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.04 1.86 7.69 -2.39 -0.02 1.84 16 43 H 0.11 2.98 7.91 -2.91 -0.02 2.96 16 44 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 45 H 0.15 1.36 8.06 -2.92 -0.02 1.34 16 46 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 47 H 0.14 1.65 7.99 -2.91 -0.02 1.63 16 Total: -1.00 -71.39 379.95 1.09 -70.30 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.26 Total: 33.16 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.78 Total: 7.57 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -7.93 Total: -135.06 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.39 1.09 -70.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970803547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.538 kcal (2) G-P(sol) polarization free energy of solvation -71.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds