Wall clock time and date at job start Tue Mar 31 2020 11:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00008 * 2 1 4 4 H 1.07998 * 119.99780 * 144.22256 * 3 2 1 5 5 C 1.38804 * 120.00167 * 324.21803 * 3 2 1 6 6 N 1.31615 * 120.00224 * 157.75702 * 5 3 2 7 7 Si 1.86805 * 120.00028 * 337.75808 * 5 3 2 8 8 H 1.48504 * 109.47382 * 95.38997 * 7 5 3 9 9 H 1.48500 * 109.47232 * 215.38958 * 7 5 3 10 10 H 1.48503 * 109.47128 * 335.38954 * 7 5 3 11 11 C 1.46505 * 119.99774 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.63927 * 176.86116 * 11 2 1 13 13 C 1.55446 * 110.70679 * 53.54888 * 11 2 1 14 14 C 1.54906 * 101.44850 * 206.14378 * 13 11 2 15 15 N 1.47426 * 104.93050 * 37.00445 * 14 13 11 16 16 C 1.34777 * 125.64572 * 155.79198 * 15 14 13 17 17 O 1.21630 * 120.00383 * 355.06225 * 16 15 14 18 18 C 1.47265 * 119.99523 * 175.06191 * 16 15 14 19 19 C 1.46746 * 126.97216 * 0.50182 * 18 16 15 20 20 C 1.34496 * 106.36531 * 179.82014 * 19 18 16 21 21 N 1.36427 * 109.01121 * 0.43628 * 20 19 18 22 22 C 1.35205 * 109.89587 * 359.72664 * 21 20 19 23 23 C 1.50998 * 124.54314 * 179.97438 * 22 21 20 24 24 C 1.53399 * 108.25629 * 344.33622 * 23 22 21 25 25 C 1.53163 * 109.04364 * 48.45453 * 24 23 22 26 26 C 1.47015 * 126.00977 * 179.73750 * 21 20 19 27 27 C 1.47018 * 108.69937 * 335.81568 * 15 14 13 28 28 H 1.08999 * 109.47530 * 272.20459 * 1 2 3 29 29 H 1.09005 * 109.47163 * 32.20205 * 1 2 3 30 30 H 1.08994 * 109.47153 * 152.20181 * 1 2 3 31 31 H 0.96999 * 120.00312 * 180.02562 * 6 5 3 32 32 H 1.09001 * 111.11467 * 88.08957 * 13 11 2 33 33 H 1.08994 * 111.01085 * 324.15523 * 13 11 2 34 34 H 1.09004 * 110.36693 * 278.10767 * 14 13 11 35 35 H 1.08995 * 110.36387 * 155.90075 * 14 13 11 36 36 H 1.08007 * 126.81774 * 0.02562 * 19 18 16 37 37 H 1.07999 * 125.48898 * 180.13915 * 20 19 18 38 38 H 1.09007 * 109.70856 * 104.02541 * 23 22 21 39 39 H 1.08995 * 109.71272 * 224.64264 * 23 22 21 40 40 H 1.09003 * 109.53875 * 168.32211 * 24 23 22 41 41 H 1.08997 * 109.54064 * 288.49210 * 24 23 22 42 42 H 1.08996 * 109.46665 * 50.45025 * 25 24 23 43 43 H 1.09006 * 109.45646 * 170.41431 * 25 24 23 44 44 H 1.09000 * 109.57057 * 42.55347 * 26 21 20 45 45 H 1.09004 * 109.65653 * 282.26914 * 26 21 20 46 46 H 1.09009 * 109.87956 * 120.47612 * 27 15 14 47 47 H 1.09003 * 109.87944 * 241.63586 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0768 1.2741 0.5468 5 6 1.6522 2.2746 -0.7028 6 7 2.0253 3.4941 -0.3776 7 14 0.4531 2.0088 -2.1104 8 1 -0.9375 2.1568 -1.6107 9 1 0.7067 3.0143 -3.1733 10 1 0.6368 0.6440 -2.6661 11 6 2.1975 -1.2688 0.0006 12 1 3.2716 -1.0923 -0.0554 13 6 1.7241 -2.1773 -1.1686 14 6 2.0498 -3.5866 -0.6142 15 7 1.7500 -3.5064 0.8270 16 6 1.4394 -4.5481 1.6238 17 8 1.3005 -5.6584 1.1469 18 6 1.2682 -4.3420 3.0718 19 6 1.3889 -3.0757 3.8034 20 6 1.1484 -3.3602 5.0958 21 7 0.9002 -4.6962 5.2180 22 6 0.9713 -5.2902 4.0055 23 6 0.7526 -6.7639 3.7599 24 6 0.8374 -7.4933 5.1067 25 6 -0.0370 -6.7599 6.1281 26 6 0.5980 -5.4083 6.4681 27 6 1.8455 -2.1019 1.2509 28 1 -0.3634 0.0395 1.0269 29 1 -0.3634 0.8696 -0.5477 30 1 -0.3633 -0.9090 -0.4792 31 1 1.6773 4.2549 -0.8685 32 1 2.2904 -1.9744 -2.0776 33 1 0.6543 -2.0637 -1.3433 34 1 3.1027 -3.8216 -0.7702 35 1 1.4197 -4.3369 -1.0917 36 1 1.6211 -2.1068 3.3864 37 1 1.1558 -2.6470 5.9067 38 1 -0.2315 -6.9209 3.3182 39 1 1.5224 -7.1428 3.0876 40 1 0.4812 -8.5168 4.9900 41 1 1.8715 -7.5041 5.4509 42 1 -1.0298 -6.5997 5.7079 43 1 -0.1189 -7.3607 7.0339 44 1 -0.0977 -4.8187 7.0651 45 1 1.5177 -5.5677 7.0309 46 1 0.8900 -1.7722 1.6591 47 1 2.6287 -1.9936 2.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971701055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:09 Heat of formation + Delta-G solvation = 50.479109 kcal Electronic energy + Delta-G solvation = -27291.568397 eV Core-core repulsion = 23669.130367 eV Total energy + Delta-G solvation = -3622.438031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61442 -39.38583 -37.31459 -36.13228 -34.78741 -32.70159 -31.75543 -30.56131 -29.36866 -28.18225 -27.65111 -26.16950 -24.40764 -24.09084 -22.81505 -21.59078 -20.97951 -19.67745 -19.29309 -18.10910 -17.12663 -16.96824 -16.14423 -15.79785 -15.74317 -15.00496 -14.90814 -14.46375 -14.37738 -14.17204 -13.89483 -13.49331 -13.32914 -13.10945 -13.05111 -12.92778 -12.43644 -12.34272 -12.23364 -12.00147 -11.73083 -11.67586 -11.36713 -11.23601 -11.20976 -11.04428 -10.88022 -10.70675 -10.50792 -10.14542 -9.92027 -9.56859 -9.51878 -8.55862 -8.54141 -8.32676 -7.98957 -6.90442 -6.02487 -3.43894 1.86718 2.51825 2.68887 3.30606 3.46521 3.47081 3.51683 3.80336 4.17736 4.31890 4.43330 4.50084 4.60282 4.80229 4.89079 4.97740 5.05001 5.12986 5.14652 5.22880 5.33244 5.35493 5.41418 5.46899 5.54241 5.61247 5.68869 5.80071 5.83632 5.86752 5.90126 6.01028 6.04552 6.17490 6.21555 6.26184 6.42350 6.44308 6.64563 6.66921 6.73925 6.84946 6.87243 7.11245 7.24152 7.93140 8.02009 8.32974 8.61104 8.92462 9.66765 10.05626 11.12833 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.003291 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.372621 B = 8506.717488 C = 9278.911487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.597 5.597 3 C -0.272 4.272 4 H 0.082 0.918 5 C 0.036 3.964 6 N -0.899 5.899 7 Si 0.885 3.115 8 H -0.287 1.287 9 H -0.304 1.304 10 H -0.269 1.269 11 C 0.169 3.831 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.111 3.889 15 N -0.609 5.609 16 C 0.605 3.395 17 O -0.565 6.565 18 C -0.227 4.227 19 C -0.169 4.169 20 C -0.021 4.021 21 N -0.447 5.447 22 C 0.104 3.896 23 C -0.052 4.052 24 C -0.128 4.128 25 C -0.136 4.136 26 C 0.104 3.896 27 C 0.082 3.918 28 H 0.019 0.981 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -19.616 12.849 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.319 5.319 3 C -0.401 4.401 4 H 0.100 0.900 5 C -0.165 4.165 6 N -0.540 5.540 7 Si 0.716 3.284 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.194 1.194 11 C 0.060 3.940 12 H 0.107 0.893 13 C -0.197 4.197 14 C -0.012 4.012 15 N -0.342 5.342 16 C 0.397 3.603 17 O -0.447 6.447 18 C -0.237 4.237 19 C -0.193 4.193 20 C -0.147 4.147 21 N -0.124 5.124 22 C -0.013 4.013 23 C -0.090 4.090 24 C -0.165 4.165 25 C -0.174 4.174 26 C -0.018 4.018 27 C -0.043 4.043 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.177 0.823 37 H 0.182 0.818 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.115 -20.151 12.957 24.159 hybrid contribution -0.740 0.338 -0.682 1.061 sum -3.855 -19.813 12.276 23.624 Atomic orbital electron populations 1.21337 0.84844 0.98894 0.98570 1.44023 1.00478 1.01394 1.86011 1.18801 1.08431 0.86339 1.26487 0.90008 1.25415 0.98217 0.95178 0.97709 1.69860 1.46184 0.97705 1.40274 0.86842 0.80325 0.77695 0.83545 1.21567 1.23186 1.19377 1.21577 0.96992 0.85341 0.90102 0.89347 1.23444 1.02443 0.93709 1.00145 1.22153 1.00173 0.98296 0.80609 1.48196 1.68681 1.07628 1.09657 1.16982 0.75782 0.82862 0.84709 1.90699 1.53834 1.23824 1.76297 1.19932 1.17400 0.93951 0.92382 1.22728 1.06110 0.98141 0.92289 1.21698 1.10178 0.83936 0.98874 1.43907 1.54560 1.07409 1.06567 1.20204 1.02256 0.94877 0.83916 1.20438 1.04119 0.87275 0.97152 1.21717 1.00292 0.99601 0.94909 1.21884 1.00088 0.94717 1.00676 1.22028 1.01319 0.93772 0.84632 1.23021 1.01693 0.79944 0.99630 0.96305 0.94013 0.94586 0.92643 0.90196 0.90859 0.91821 0.91112 0.82274 0.81771 0.89717 0.88428 0.90504 0.91400 0.90673 0.89656 0.89361 0.90078 0.90863 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.32 8.50 59.85 0.51 2.83 16 2 N -0.60 -13.58 2.52 -171.21 -0.43 -14.01 16 3 C -0.27 -7.33 9.88 -15.06 -0.15 -7.48 16 4 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 5 C 0.04 1.00 5.33 -17.44 -0.09 0.91 16 6 N -0.90 -26.93 13.97 55.49 0.78 -26.15 16 7 Si 0.88 22.00 24.95 -169.99 -4.24 17.76 16 8 H -0.29 -7.00 6.68 56.52 0.38 -6.62 16 9 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 C 0.17 3.19 3.45 -65.94 -0.23 2.97 16 12 H 0.09 1.68 7.95 -51.93 -0.41 1.27 16 13 C -0.16 -2.67 6.62 -24.43 -0.16 -2.83 16 14 C 0.11 1.75 6.92 -2.53 -0.02 1.73 16 15 N -0.61 -10.36 3.33 -171.85 -0.57 -10.93 16 16 C 0.60 10.75 7.83 -12.59 -0.10 10.65 16 17 O -0.57 -10.99 15.58 5.25 0.08 -10.91 16 18 C -0.23 -3.59 6.22 -103.48 -0.64 -4.23 16 19 C -0.17 -2.43 9.42 -37.47 -0.35 -2.78 16 20 C -0.02 -0.25 11.40 -16.83 -0.19 -0.45 16 21 N -0.45 -4.99 3.11 -111.92 -0.35 -5.33 16 22 C 0.10 1.40 6.57 -81.65 -0.54 0.86 16 23 C -0.05 -0.58 5.31 -27.53 -0.15 -0.73 16 24 C -0.13 -0.95 5.98 -26.44 -0.16 -1.11 16 25 C -0.14 -0.84 5.92 -26.57 -0.16 -0.99 16 26 C 0.10 0.73 6.90 -3.69 -0.03 0.70 16 27 C 0.08 1.39 4.64 -3.07 -0.01 1.38 16 28 H 0.02 0.39 7.98 -51.93 -0.41 -0.03 16 29 H 0.04 0.97 2.92 -51.93 -0.15 0.82 16 30 H 0.04 0.69 6.00 -51.93 -0.31 0.38 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.30 6.03 -51.93 -0.31 0.99 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.12 7.99 -51.93 -0.41 0.70 16 36 H 0.16 2.32 4.81 -52.48 -0.25 2.06 16 37 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.23 7.42 -51.93 -0.39 0.84 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 42 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 1.30 6.19 -51.92 -0.32 0.98 16 47 H 0.07 1.12 6.59 -51.93 -0.34 0.77 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -32.76 356.78 -8.95 -41.71 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.13 Total: 1.07 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.46 Total: 1.41 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.58 Total: -56.43 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.24 Total: 17.76 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.76 -8.95 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971701055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.192 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds