Wall clock time and date at job start Tue Mar 31 2020 11:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00008 * 2 1 4 4 H 1.07998 * 119.99780 * 144.22256 * 3 2 1 5 5 C 1.38804 * 120.00167 * 324.21803 * 3 2 1 6 6 N 1.31615 * 120.00224 * 157.75702 * 5 3 2 7 7 Si 1.86805 * 120.00028 * 337.75808 * 5 3 2 8 8 H 1.48504 * 109.47382 * 95.38997 * 7 5 3 9 9 H 1.48500 * 109.47232 * 215.38958 * 7 5 3 10 10 H 1.48503 * 109.47128 * 335.38954 * 7 5 3 11 11 C 1.46505 * 119.99774 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.63927 * 176.86116 * 11 2 1 13 13 C 1.55446 * 110.70679 * 53.54888 * 11 2 1 14 14 C 1.54906 * 101.44850 * 206.14378 * 13 11 2 15 15 N 1.47426 * 104.93050 * 37.00445 * 14 13 11 16 16 C 1.34777 * 125.64572 * 155.79198 * 15 14 13 17 17 O 1.21630 * 120.00383 * 355.06225 * 16 15 14 18 18 C 1.47265 * 119.99523 * 175.06191 * 16 15 14 19 19 C 1.46746 * 126.97216 * 0.50182 * 18 16 15 20 20 C 1.34496 * 106.36531 * 179.82014 * 19 18 16 21 21 N 1.36427 * 109.01121 * 0.43628 * 20 19 18 22 22 C 1.35205 * 109.89587 * 359.72664 * 21 20 19 23 23 C 1.50998 * 124.54314 * 179.97438 * 22 21 20 24 24 C 1.53399 * 108.25629 * 344.33622 * 23 22 21 25 25 C 1.53163 * 109.04364 * 48.45453 * 24 23 22 26 26 C 1.47015 * 126.00977 * 179.73750 * 21 20 19 27 27 C 1.47018 * 108.69937 * 335.81568 * 15 14 13 28 28 H 1.08999 * 109.47530 * 272.20459 * 1 2 3 29 29 H 1.09005 * 109.47163 * 32.20205 * 1 2 3 30 30 H 1.08994 * 109.47153 * 152.20181 * 1 2 3 31 31 H 0.96999 * 120.00312 * 180.02562 * 6 5 3 32 32 H 1.09001 * 111.11467 * 88.08957 * 13 11 2 33 33 H 1.08994 * 111.01085 * 324.15523 * 13 11 2 34 34 H 1.09004 * 110.36693 * 278.10767 * 14 13 11 35 35 H 1.08995 * 110.36387 * 155.90075 * 14 13 11 36 36 H 1.08007 * 126.81774 * 0.02562 * 19 18 16 37 37 H 1.07999 * 125.48898 * 180.13915 * 20 19 18 38 38 H 1.09007 * 109.70856 * 104.02541 * 23 22 21 39 39 H 1.08995 * 109.71272 * 224.64264 * 23 22 21 40 40 H 1.09003 * 109.53875 * 168.32211 * 24 23 22 41 41 H 1.08997 * 109.54064 * 288.49210 * 24 23 22 42 42 H 1.08996 * 109.46665 * 50.45025 * 25 24 23 43 43 H 1.09006 * 109.45646 * 170.41431 * 25 24 23 44 44 H 1.09000 * 109.57057 * 42.55347 * 26 21 20 45 45 H 1.09004 * 109.65653 * 282.26914 * 26 21 20 46 46 H 1.09009 * 109.87956 * 120.47612 * 27 15 14 47 47 H 1.09003 * 109.87944 * 241.63586 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0768 1.2741 0.5468 5 6 1.6522 2.2746 -0.7028 6 7 2.0253 3.4941 -0.3776 7 14 0.4531 2.0088 -2.1104 8 1 -0.9375 2.1568 -1.6107 9 1 0.7067 3.0143 -3.1733 10 1 0.6368 0.6440 -2.6661 11 6 2.1975 -1.2688 0.0006 12 1 3.2716 -1.0923 -0.0554 13 6 1.7241 -2.1773 -1.1686 14 6 2.0498 -3.5866 -0.6142 15 7 1.7500 -3.5064 0.8270 16 6 1.4394 -4.5481 1.6238 17 8 1.3005 -5.6584 1.1469 18 6 1.2682 -4.3420 3.0718 19 6 1.3889 -3.0757 3.8034 20 6 1.1484 -3.3602 5.0958 21 7 0.9002 -4.6962 5.2180 22 6 0.9713 -5.2902 4.0055 23 6 0.7526 -6.7639 3.7599 24 6 0.8374 -7.4933 5.1067 25 6 -0.0370 -6.7599 6.1281 26 6 0.5980 -5.4083 6.4681 27 6 1.8455 -2.1019 1.2509 28 1 -0.3634 0.0395 1.0269 29 1 -0.3634 0.8696 -0.5477 30 1 -0.3633 -0.9090 -0.4792 31 1 1.6773 4.2549 -0.8685 32 1 2.2904 -1.9744 -2.0776 33 1 0.6543 -2.0637 -1.3433 34 1 3.1027 -3.8216 -0.7702 35 1 1.4197 -4.3369 -1.0917 36 1 1.6211 -2.1068 3.3864 37 1 1.1558 -2.6470 5.9067 38 1 -0.2315 -6.9209 3.3182 39 1 1.5224 -7.1428 3.0876 40 1 0.4812 -8.5168 4.9900 41 1 1.8715 -7.5041 5.4509 42 1 -1.0298 -6.5997 5.7079 43 1 -0.1189 -7.3607 7.0339 44 1 -0.0977 -4.8187 7.0651 45 1 1.5177 -5.5677 7.0309 46 1 0.8900 -1.7722 1.6591 47 1 2.6287 -1.9936 2.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971701055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:08 Heat of formation + Delta-G solvation = 30.978594 kcal Electronic energy + Delta-G solvation = -27292.414003 eV Core-core repulsion = 23669.130367 eV Total energy + Delta-G solvation = -3623.283636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.55585 -40.74220 -38.81779 -36.86238 -36.48362 -33.75645 -33.55374 -31.91702 -30.39813 -29.56091 -28.61268 -28.04992 -25.56608 -25.15067 -24.33662 -22.57948 -22.03662 -20.96739 -20.60007 -19.08126 -18.94865 -18.21225 -17.72592 -17.09242 -16.80897 -16.41859 -16.05583 -15.68636 -15.29120 -15.10276 -14.93876 -14.83997 -14.65092 -14.49083 -14.35160 -14.26809 -14.06056 -13.94137 -13.50835 -13.29719 -12.95821 -12.85753 -12.49300 -12.47983 -12.40046 -12.14988 -12.02526 -11.96725 -11.85394 -11.73825 -11.58286 -11.44204 -10.89654 -10.61882 -9.69832 -9.47688 -9.07122 -8.82028 -8.18603 -5.56544 0.74485 1.32925 1.44526 1.50954 1.55348 1.82860 2.20765 2.43663 2.54402 3.05684 3.27883 3.58984 3.71544 3.74511 3.81407 3.84993 3.87328 4.06972 4.22172 4.29219 4.36238 4.37806 4.38766 4.40349 4.46782 4.53212 4.68333 4.72025 4.73899 4.83783 4.85086 4.86870 4.96767 4.98891 5.01021 5.02882 5.09400 5.18278 5.23052 5.27553 5.29405 5.45672 5.80515 5.92450 6.11762 6.18876 6.38293 6.60846 6.94940 7.27173 7.60915 8.02897 9.00711 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.003291 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.372621 B = 8506.717488 C = 9278.911487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.606 5.606 3 C -0.258 4.258 4 H 0.051 0.949 5 C -0.019 4.019 6 N -0.947 5.947 7 Si 0.946 3.054 8 H -0.279 1.279 9 H -0.312 1.312 10 H -0.255 1.255 11 C 0.163 3.837 12 H 0.084 0.916 13 C -0.146 4.146 14 C 0.114 3.886 15 N -0.612 5.612 16 C 0.598 3.402 17 O -0.591 6.591 18 C -0.267 4.267 19 C -0.197 4.197 20 C -0.008 4.008 21 N -0.440 5.440 22 C 0.103 3.897 23 C -0.053 4.053 24 C -0.122 4.122 25 C -0.132 4.132 26 C 0.093 3.907 27 C 0.101 3.899 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.197 0.803 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 -21.790 14.495 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.329 5.329 3 C -0.388 4.388 4 H 0.069 0.931 5 C -0.215 4.215 6 N -0.591 5.591 7 Si 0.775 3.225 8 H -0.207 1.207 9 H -0.241 1.241 10 H -0.179 1.179 11 C 0.055 3.945 12 H 0.102 0.898 13 C -0.186 4.186 14 C -0.008 4.008 15 N -0.345 5.345 16 C 0.392 3.608 17 O -0.474 6.474 18 C -0.277 4.277 19 C -0.220 4.220 20 C -0.135 4.135 21 N -0.116 5.116 22 C -0.016 4.016 23 C -0.091 4.091 24 C -0.159 4.159 25 C -0.169 4.169 26 C -0.026 4.026 27 C -0.024 4.024 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.167 0.833 37 H 0.214 0.786 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.118 0.882 46 H 0.085 0.915 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.241 -22.374 14.626 27.065 hybrid contribution -0.344 0.936 -1.050 1.448 sum -4.586 -21.438 13.575 25.786 Atomic orbital electron populations 1.21371 0.83920 0.99305 0.99089 1.44037 1.01117 1.01369 1.86344 1.18710 1.07289 0.87877 1.24898 0.93080 1.25992 1.00757 0.94837 0.99960 1.69978 1.48787 0.98599 1.41770 0.85851 0.78662 0.77756 0.80203 1.20653 1.24127 1.17945 1.21666 0.96484 0.84334 0.91999 0.89822 1.23324 1.02170 0.93543 0.99565 1.22179 1.01076 0.97569 0.80020 1.48240 1.68715 1.07393 1.10103 1.17367 0.75264 0.82512 0.85680 1.90668 1.55181 1.24594 1.76960 1.20027 1.20227 0.95585 0.91849 1.22692 1.08305 0.97446 0.93550 1.22134 1.07849 0.84749 0.98723 1.44247 1.52829 1.07292 1.07246 1.20490 1.01068 0.95526 0.84473 1.20447 1.02900 0.86569 0.99153 1.21707 1.01020 1.00201 0.92988 1.21911 0.99067 0.94476 1.01466 1.22467 1.02975 0.94169 0.82956 1.22729 1.01417 0.79746 0.98520 0.95612 0.95527 0.92182 0.92792 0.89198 0.91251 0.90469 0.90853 0.83290 0.78595 0.90358 0.90505 0.88774 0.91155 0.91361 0.86406 0.87096 0.88191 0.91544 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.46 8.50 127.77 1.09 5.54 16 2 N -0.61 -27.30 2.52 -695.60 -1.76 -29.05 16 3 C -0.26 -14.10 9.88 84.03 0.83 -13.27 16 4 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 5 C -0.02 -1.07 5.33 84.86 0.45 -0.62 16 6 N -0.95 -58.13 13.97 21.65 0.30 -57.83 16 7 Si 0.95 45.54 24.95 68.60 1.71 47.25 16 8 H -0.28 -12.93 6.68 99.48 0.66 -12.27 16 9 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 C 0.16 6.08 3.45 46.28 0.16 6.24 16 12 H 0.08 3.19 7.95 -2.39 -0.02 3.17 16 13 C -0.15 -4.75 6.62 32.09 0.21 -4.53 16 14 C 0.11 3.49 6.92 86.85 0.60 4.09 16 15 N -0.61 -20.68 3.33 -815.85 -2.71 -23.40 16 16 C 0.60 21.48 7.83 86.62 0.68 22.16 16 17 O -0.59 -23.32 15.58 -4.13 -0.06 -23.39 16 18 C -0.27 -8.47 6.22 -19.12 -0.12 -8.59 16 19 C -0.20 -5.57 9.42 23.64 0.22 -5.34 16 20 C -0.01 -0.18 11.40 83.12 0.95 0.77 16 21 N -0.44 -8.78 3.11 -508.02 -1.58 -10.36 16 22 C 0.10 2.68 6.57 41.69 0.27 2.95 16 23 C -0.05 -1.15 5.31 30.08 0.16 -0.99 16 24 C -0.12 -1.51 5.98 30.78 0.18 -1.33 16 25 C -0.13 -1.13 5.92 30.70 0.18 -0.95 16 26 C 0.09 0.94 6.90 86.33 0.60 1.54 16 27 C 0.10 3.41 4.64 86.73 0.40 3.81 16 28 H 0.03 1.03 7.98 -2.39 -0.02 1.01 16 29 H 0.03 1.20 2.92 -2.38 -0.01 1.19 16 30 H 0.06 2.20 6.00 -2.39 -0.01 2.18 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.07 2.32 6.03 -2.39 -0.01 2.31 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.24 7.99 -2.39 -0.02 2.22 16 36 H 0.15 4.39 4.81 -2.91 -0.01 4.37 16 37 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.08 1.98 7.42 -2.39 -0.02 1.96 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 42 H 0.07 0.72 8.11 -2.39 -0.02 0.70 16 43 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 2.36 6.19 -2.38 -0.01 2.34 16 47 H 0.07 2.39 6.59 -2.39 -0.02 2.38 16 Total: -1.00 -72.56 356.78 3.70 -68.86 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.93 Total: 16.44 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.87 Total: 11.48 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -5.75 Total: -120.64 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.71 Total: 47.25 kcal Total: -72.56 3.70 -68.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971701055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.835 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds