Wall clock time and date at job start Tue Mar 31 2020 11:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 120.00195 * 2 1 4 4 H 1.08001 * 120.00545 * 159.55374 * 3 2 1 5 5 C 1.38819 * 119.99814 * 339.26927 * 3 2 1 6 6 N 1.31618 * 120.00069 * 345.42062 * 5 3 2 7 7 Si 1.86797 * 119.99805 * 165.40930 * 5 3 2 8 8 H 1.48501 * 109.46974 * 94.71760 * 7 5 3 9 9 H 1.48500 * 109.47091 * 214.71594 * 7 5 3 10 10 H 1.48500 * 109.47518 * 334.71737 * 7 5 3 11 11 C 1.46496 * 119.99800 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88524 * 177.57853 * 11 2 1 13 13 C 1.55161 * 111.00469 * 301.45473 * 11 2 1 14 14 C 1.54321 * 102.94144 * 153.57878 * 13 11 2 15 15 N 1.47027 * 107.27270 * 337.80570 * 14 13 11 16 16 C 1.34780 * 125.65134 * 178.91818 * 15 14 13 17 17 O 1.21615 * 119.99974 * 180.02562 * 16 15 14 18 18 C 1.47266 * 119.99782 * 0.03185 * 16 15 14 19 19 C 1.46747 * 126.96916 * 0.02562 * 18 16 15 20 20 C 1.34495 * 106.36725 * 179.97438 * 19 18 16 21 21 N 1.36424 * 109.01177 * 359.97438 * 20 19 18 22 22 C 1.35213 * 109.89487 * 359.78937 * 21 20 19 23 23 C 1.51001 * 124.54587 * 180.19977 * 22 21 20 24 24 C 1.53390 * 108.25091 * 344.46402 * 23 22 21 25 25 C 1.53163 * 109.03815 * 48.48355 * 24 23 22 26 26 C 1.47015 * 126.01527 * 180.02562 * 21 20 19 27 27 C 1.47425 * 108.69980 * 358.94220 * 15 14 13 28 28 H 1.09003 * 109.47185 * 84.86621 * 1 2 3 29 29 H 1.09001 * 109.47275 * 204.86338 * 1 2 3 30 30 H 1.09004 * 109.47440 * 324.86893 * 1 2 3 31 31 H 0.96999 * 119.99902 * 179.97438 * 6 5 3 32 32 H 1.09004 * 110.71803 * 271.93823 * 13 11 2 33 33 H 1.08991 * 110.72158 * 35.03715 * 13 11 2 34 34 H 1.08995 * 109.88586 * 97.22198 * 14 13 11 35 35 H 1.09004 * 109.88511 * 218.23431 * 14 13 11 36 36 H 1.08000 * 126.81784 * 359.92351 * 19 18 16 37 37 H 1.07998 * 125.49799 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.70967 * 104.15730 * 23 22 21 39 39 H 1.09006 * 109.70855 * 224.77715 * 23 22 21 40 40 H 1.09001 * 109.54313 * 168.34935 * 24 23 22 41 41 H 1.09001 * 109.54523 * 288.52805 * 24 23 22 42 42 H 1.09005 * 109.45814 * 50.44321 * 25 24 23 43 43 H 1.08996 * 109.46314 * 170.41946 * 25 24 23 44 44 H 1.08999 * 109.56463 * 282.26548 * 26 21 20 45 45 H 1.08998 * 109.56155 * 42.60154 * 26 21 20 46 46 H 1.08998 * 110.36956 * 265.28516 * 27 15 14 47 47 H 1.09003 * 110.36610 * 142.96453 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1787 1.2154 0.3267 5 6 1.5230 2.3491 -0.4256 6 7 0.3895 2.2804 -1.0909 7 14 2.2884 4.0120 -0.0536 8 1 3.1125 4.4473 -1.2098 9 1 1.2143 5.0077 0.1914 10 1 3.1470 3.9031 1.1531 11 6 2.1974 -1.2687 0.0006 12 1 3.2729 -1.0966 -0.0425 13 6 1.8209 -2.1277 1.2366 14 6 2.0895 -3.5679 0.7514 15 7 2.0419 -3.5495 -0.7180 16 6 2.2473 -4.6101 -1.5239 17 8 2.1833 -4.4778 -2.7312 18 6 2.5491 -5.9290 -0.9426 19 6 2.6618 -6.2605 0.4825 20 6 2.9467 -7.5735 0.5448 21 7 3.0173 -8.0736 -0.7225 22 6 2.7743 -7.0911 -1.6191 23 6 2.7656 -7.2817 -3.1170 24 6 3.4445 -8.6199 -3.4349 25 6 2.8535 -9.7069 -2.5320 26 6 3.3068 -9.4682 -1.0866 27 6 1.7328 -2.1787 -1.1638 28 1 -0.3634 0.0920 -1.0236 29 1 -0.3634 -0.9324 0.4321 30 1 -0.3634 0.8405 0.5914 31 1 -0.0486 3.0933 -1.3879 32 1 2.4584 -1.8817 2.0859 33 1 0.7702 -1.9941 1.4935 34 1 3.0740 -3.8944 1.0863 35 1 1.3241 -4.2392 1.1410 36 1 2.5408 -5.5843 1.3158 37 1 3.0948 -8.1407 1.4519 38 1 1.7378 -7.2956 -3.4798 39 1 3.3134 -6.4691 -3.5942 40 1 3.2695 -8.8785 -4.4792 41 1 4.5162 -8.5371 -3.2543 42 1 1.7654 -9.6725 -2.5868 43 1 3.2031 -10.6844 -2.8640 44 1 4.3767 -9.6550 -0.9943 45 1 2.7591 -10.1393 -0.4250 46 1 0.6613 -2.0660 -1.3289 47 1 2.2846 -1.9421 -2.0735 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971701056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:13 Heat of formation + Delta-G solvation = 44.773614 kcal Electronic energy + Delta-G solvation = -26916.583469 eV Core-core repulsion = 23293.898030 eV Total energy + Delta-G solvation = -3622.685439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65713 -39.25941 -37.11719 -36.15598 -34.68445 -32.69970 -31.55607 -29.74486 -29.61264 -28.29838 -27.23263 -25.99802 -24.43556 -23.98372 -22.46809 -21.87760 -20.86317 -19.66046 -19.16403 -18.13195 -17.08819 -16.95637 -15.91658 -15.72556 -15.63341 -14.91999 -14.57498 -14.46555 -14.32718 -14.06259 -13.72270 -13.48558 -13.21301 -13.18343 -13.06183 -12.45264 -12.34766 -12.24882 -12.09438 -11.78107 -11.77629 -11.36778 -11.23433 -11.14998 -11.04831 -10.84849 -10.66967 -10.43763 -10.36860 -10.20611 -9.81226 -9.74717 -9.42183 -8.61611 -8.53465 -8.29797 -7.96141 -6.76544 -5.71073 -3.15713 1.87155 2.43354 2.64107 3.40396 3.46690 3.48691 3.57273 3.85384 4.14316 4.30398 4.42069 4.51727 4.58659 4.80922 4.90772 4.99916 5.09956 5.14256 5.15099 5.32494 5.39101 5.43855 5.46456 5.49141 5.60582 5.67962 5.73457 5.84723 5.90852 5.91234 5.96766 6.00409 6.14535 6.18220 6.42727 6.51882 6.69886 6.75196 6.80432 6.87334 6.97768 7.07547 7.18281 7.40673 7.75440 7.83546 8.08283 8.39393 8.71775 9.24150 9.87390 10.35602 11.33724 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031303 B = 0.002681 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.270360 B =10442.364501 C =10878.631118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.077 0.923 13 C -0.156 4.156 14 C 0.106 3.894 15 N -0.608 5.608 16 C 0.600 3.400 17 O -0.558 6.558 18 C -0.223 4.223 19 C -0.175 4.175 20 C -0.022 4.022 21 N -0.447 5.447 22 C 0.105 3.895 23 C -0.054 4.054 24 C -0.128 4.128 25 C -0.136 4.136 26 C 0.104 3.896 27 C 0.090 3.910 28 H 0.031 0.969 29 H 0.002 0.998 30 H 0.044 0.956 31 H 0.253 0.747 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -25.976 2.662 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.095 0.905 13 C -0.196 4.196 14 C -0.018 4.018 15 N -0.341 5.341 16 C 0.391 3.609 17 O -0.439 6.439 18 C -0.233 4.233 19 C -0.199 4.199 20 C -0.148 4.148 21 N -0.125 5.125 22 C -0.011 4.011 23 C -0.092 4.092 24 C -0.166 4.166 25 C -0.174 4.174 26 C -0.017 4.017 27 C -0.034 4.034 28 H 0.049 0.951 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.938 -26.131 1.884 26.660 hybrid contribution 0.277 0.854 0.386 0.978 sum 5.215 -25.277 2.271 25.909 Atomic orbital electron populations 1.20807 0.82399 0.95608 0.99613 1.43881 1.01931 0.99904 1.84902 1.19237 0.97168 0.84796 1.37503 0.91148 1.25002 0.97858 0.98482 0.98304 1.70097 1.18764 1.26911 1.39179 0.86227 0.78184 0.83970 0.78067 1.21505 1.21615 1.20471 1.21446 0.96272 0.85682 0.90390 0.90499 1.23252 1.02714 0.93256 1.00423 1.22245 1.00508 0.98378 0.80659 1.48220 1.69552 1.09377 1.06946 1.16988 0.76421 0.82278 0.85243 1.90725 1.53953 1.85139 1.14055 1.20019 1.16977 0.92910 0.93346 1.22595 1.06818 0.94891 0.95581 1.21642 1.10940 0.95290 0.86899 1.43907 1.54694 1.08153 1.05740 1.20246 1.01704 0.87060 0.92125 1.20465 1.02631 0.97931 0.88156 1.21722 1.00369 0.94408 1.00063 1.21926 1.02152 1.00159 0.93117 1.22077 1.01744 0.80201 0.97703 1.23016 1.00883 0.79402 1.00114 0.95062 0.97955 0.93737 0.93703 0.90741 0.90605 0.91652 0.91916 0.82690 0.81935 0.89607 0.88220 0.90438 0.91398 0.90611 0.89670 0.89997 0.89501 0.91598 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 7.59 59.85 0.45 4.39 16 2 N -0.59 -14.62 2.96 -171.03 -0.51 -15.13 16 3 C -0.26 -7.06 9.63 -15.06 -0.14 -7.20 16 4 H 0.07 1.88 7.85 -52.49 -0.41 1.46 16 5 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 6 N -0.90 -26.52 10.66 55.49 0.59 -25.93 16 7 Si 0.91 21.90 29.58 -169.99 -5.03 16.87 16 8 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.17 3.58 3.54 -65.78 -0.23 3.34 16 12 H 0.08 1.61 7.94 -51.93 -0.41 1.20 16 13 C -0.16 -2.60 6.49 -24.90 -0.16 -2.76 16 14 C 0.11 1.55 4.99 -3.06 -0.02 1.54 16 15 N -0.61 -11.01 3.33 -171.84 -0.57 -11.58 16 16 C 0.60 11.20 7.84 -12.59 -0.10 11.10 16 17 O -0.56 -11.94 15.59 5.26 0.08 -11.86 16 18 C -0.22 -3.43 6.22 -103.48 -0.64 -4.07 16 19 C -0.17 -2.18 9.40 -37.47 -0.35 -2.53 16 20 C -0.02 -0.22 11.40 -16.83 -0.19 -0.42 16 21 N -0.45 -4.60 3.11 -111.81 -0.35 -4.95 16 22 C 0.10 1.38 6.57 -81.64 -0.54 0.84 16 23 C -0.05 -0.62 5.32 -27.53 -0.15 -0.77 16 24 C -0.13 -0.97 5.97 -26.45 -0.16 -1.13 16 25 C -0.14 -0.79 5.94 -26.46 -0.16 -0.95 16 26 C 0.10 0.65 6.90 -3.58 -0.02 0.63 16 27 C 0.09 1.86 6.47 -2.53 -0.02 1.85 16 28 H 0.03 0.84 7.39 -51.93 -0.38 0.46 16 29 H 0.00 0.04 6.34 -51.93 -0.33 -0.29 16 30 H 0.04 1.17 7.23 -51.93 -0.38 0.79 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.30 6.36 -51.93 -0.33 0.97 16 34 H 0.07 0.86 6.84 -51.93 -0.36 0.50 16 35 H 0.06 0.83 7.00 -51.93 -0.36 0.47 16 36 H 0.16 1.71 4.80 -52.49 -0.25 1.46 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 1.33 7.40 -51.93 -0.38 0.95 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 42 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 1.45 7.05 -51.93 -0.37 1.08 16 47 H 0.07 1.61 8.04 -51.93 -0.42 1.19 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -33.40 361.58 -10.16 -43.56 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.32 Total: -0.28 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.51 Total: 3.84 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.83 Total: -57.58 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.40 -10.16 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971701056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.338 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds