Wall clock time and date at job start Tue Mar 31 2020 11:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 120.00195 * 2 1 4 4 H 1.08001 * 120.00545 * 159.55374 * 3 2 1 5 5 C 1.38819 * 119.99814 * 339.26927 * 3 2 1 6 6 N 1.31618 * 120.00069 * 345.42062 * 5 3 2 7 7 Si 1.86797 * 119.99805 * 165.40930 * 5 3 2 8 8 H 1.48501 * 109.46974 * 94.71760 * 7 5 3 9 9 H 1.48500 * 109.47091 * 214.71594 * 7 5 3 10 10 H 1.48500 * 109.47518 * 334.71737 * 7 5 3 11 11 C 1.46496 * 119.99800 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88524 * 177.57853 * 11 2 1 13 13 C 1.55161 * 111.00469 * 301.45473 * 11 2 1 14 14 C 1.54321 * 102.94144 * 153.57878 * 13 11 2 15 15 N 1.47027 * 107.27270 * 337.80570 * 14 13 11 16 16 C 1.34780 * 125.65134 * 178.91818 * 15 14 13 17 17 O 1.21615 * 119.99974 * 180.02562 * 16 15 14 18 18 C 1.47266 * 119.99782 * 0.03185 * 16 15 14 19 19 C 1.46747 * 126.96916 * 0.02562 * 18 16 15 20 20 C 1.34495 * 106.36725 * 179.97438 * 19 18 16 21 21 N 1.36424 * 109.01177 * 359.97438 * 20 19 18 22 22 C 1.35213 * 109.89487 * 359.78937 * 21 20 19 23 23 C 1.51001 * 124.54587 * 180.19977 * 22 21 20 24 24 C 1.53390 * 108.25091 * 344.46402 * 23 22 21 25 25 C 1.53163 * 109.03815 * 48.48355 * 24 23 22 26 26 C 1.47015 * 126.01527 * 180.02562 * 21 20 19 27 27 C 1.47425 * 108.69980 * 358.94220 * 15 14 13 28 28 H 1.09003 * 109.47185 * 84.86621 * 1 2 3 29 29 H 1.09001 * 109.47275 * 204.86338 * 1 2 3 30 30 H 1.09004 * 109.47440 * 324.86893 * 1 2 3 31 31 H 0.96999 * 119.99902 * 179.97438 * 6 5 3 32 32 H 1.09004 * 110.71803 * 271.93823 * 13 11 2 33 33 H 1.08991 * 110.72158 * 35.03715 * 13 11 2 34 34 H 1.08995 * 109.88586 * 97.22198 * 14 13 11 35 35 H 1.09004 * 109.88511 * 218.23431 * 14 13 11 36 36 H 1.08000 * 126.81784 * 359.92351 * 19 18 16 37 37 H 1.07998 * 125.49799 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.70967 * 104.15730 * 23 22 21 39 39 H 1.09006 * 109.70855 * 224.77715 * 23 22 21 40 40 H 1.09001 * 109.54313 * 168.34935 * 24 23 22 41 41 H 1.09001 * 109.54523 * 288.52805 * 24 23 22 42 42 H 1.09005 * 109.45814 * 50.44321 * 25 24 23 43 43 H 1.08996 * 109.46314 * 170.41946 * 25 24 23 44 44 H 1.08999 * 109.56463 * 282.26548 * 26 21 20 45 45 H 1.08998 * 109.56155 * 42.60154 * 26 21 20 46 46 H 1.08998 * 110.36956 * 265.28516 * 27 15 14 47 47 H 1.09003 * 110.36610 * 142.96453 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1787 1.2154 0.3267 5 6 1.5230 2.3491 -0.4256 6 7 0.3895 2.2804 -1.0909 7 14 2.2884 4.0120 -0.0536 8 1 3.1125 4.4473 -1.2098 9 1 1.2143 5.0077 0.1914 10 1 3.1470 3.9031 1.1531 11 6 2.1974 -1.2687 0.0006 12 1 3.2729 -1.0966 -0.0425 13 6 1.8209 -2.1277 1.2366 14 6 2.0895 -3.5679 0.7514 15 7 2.0419 -3.5495 -0.7180 16 6 2.2473 -4.6101 -1.5239 17 8 2.1833 -4.4778 -2.7312 18 6 2.5491 -5.9290 -0.9426 19 6 2.6618 -6.2605 0.4825 20 6 2.9467 -7.5735 0.5448 21 7 3.0173 -8.0736 -0.7225 22 6 2.7743 -7.0911 -1.6191 23 6 2.7656 -7.2817 -3.1170 24 6 3.4445 -8.6199 -3.4349 25 6 2.8535 -9.7069 -2.5320 26 6 3.3068 -9.4682 -1.0866 27 6 1.7328 -2.1787 -1.1638 28 1 -0.3634 0.0920 -1.0236 29 1 -0.3634 -0.9324 0.4321 30 1 -0.3634 0.8405 0.5914 31 1 -0.0486 3.0933 -1.3879 32 1 2.4584 -1.8817 2.0859 33 1 0.7702 -1.9941 1.4935 34 1 3.0740 -3.8944 1.0863 35 1 1.3241 -4.2392 1.1410 36 1 2.5408 -5.5843 1.3158 37 1 3.0948 -8.1407 1.4519 38 1 1.7378 -7.2956 -3.4798 39 1 3.3134 -6.4691 -3.5942 40 1 3.2695 -8.8785 -4.4792 41 1 4.5162 -8.5371 -3.2543 42 1 1.7654 -9.6725 -2.5868 43 1 3.2031 -10.6844 -2.8640 44 1 4.3767 -9.6550 -0.9943 45 1 2.7591 -10.1393 -0.4250 46 1 0.6613 -2.0660 -1.3289 47 1 2.2846 -1.9421 -2.0735 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971701056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:12 Heat of formation + Delta-G solvation = 24.860419 kcal Electronic energy + Delta-G solvation = -26917.446970 eV Core-core repulsion = 23293.898030 eV Total energy + Delta-G solvation = -3623.548940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.52934 -40.69957 -38.71523 -36.88921 -36.45959 -33.65864 -33.31280 -31.28889 -30.60004 -29.51336 -28.41518 -28.05802 -25.56271 -25.07890 -24.13203 -22.81283 -21.80638 -20.97198 -20.61117 -19.06851 -18.93896 -18.15461 -17.47802 -16.92122 -16.64714 -16.45427 -15.88280 -15.56588 -15.19371 -15.02535 -14.98496 -14.76852 -14.57298 -14.43116 -14.33828 -14.03745 -13.92004 -13.49603 -13.42993 -13.18037 -12.86764 -12.73888 -12.48377 -12.40888 -12.28956 -12.11248 -12.04582 -11.97263 -11.85488 -11.75516 -11.72270 -11.40551 -10.87411 -10.63192 -9.70725 -9.45115 -9.04991 -8.81339 -7.83357 -5.30935 0.75678 1.48281 1.48513 1.56998 1.59238 1.83354 2.22434 2.52880 2.56895 3.28407 3.54833 3.60153 3.74215 3.79571 3.82263 3.87253 3.95112 4.14777 4.21038 4.34486 4.36619 4.39373 4.41434 4.44981 4.47635 4.67445 4.73242 4.80254 4.84074 4.86303 4.88959 4.98625 5.01887 5.02405 5.10135 5.19797 5.24830 5.26797 5.29869 5.38609 5.45378 5.64219 5.70963 5.83364 6.13702 6.30469 6.42913 6.69391 7.12952 7.28975 7.84079 8.28177 9.20128 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031303 B = 0.002681 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.270360 B =10442.364501 C =10878.631118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.601 5.601 3 C -0.266 4.266 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.973 3.027 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.265 1.265 11 C 0.167 3.833 12 H 0.073 0.927 13 C -0.140 4.140 14 C 0.111 3.889 15 N -0.611 5.611 16 C 0.590 3.410 17 O -0.603 6.603 18 C -0.263 4.263 19 C -0.193 4.193 20 C -0.003 4.003 21 N -0.440 5.440 22 C 0.098 3.902 23 C -0.057 4.057 24 C -0.122 4.122 25 C -0.132 4.132 26 C 0.095 3.905 27 C 0.101 3.899 28 H -0.003 1.003 29 H 0.034 0.966 30 H 0.022 0.978 31 H 0.248 0.752 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.168 0.832 37 H 0.206 0.794 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.046 0.954 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.524 -29.457 5.366 30.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.322 5.322 3 C -0.395 4.395 4 H 0.094 0.906 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.801 3.199 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.189 1.189 11 C 0.058 3.942 12 H 0.091 0.909 13 C -0.180 4.180 14 C -0.011 4.011 15 N -0.343 5.343 16 C 0.383 3.617 17 O -0.487 6.487 18 C -0.273 4.273 19 C -0.216 4.216 20 C -0.129 4.129 21 N -0.116 5.116 22 C -0.021 4.021 23 C -0.095 4.095 24 C -0.159 4.159 25 C -0.169 4.169 26 C -0.024 4.024 27 C -0.024 4.024 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.186 0.814 37 H 0.223 0.777 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.133 0.867 46 H 0.065 0.935 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.478 -29.677 4.639 30.728 hybrid contribution -0.152 1.798 -0.507 1.874 sum 6.326 -27.879 4.131 28.885 Atomic orbital electron populations 1.20495 0.82598 0.96142 0.97377 1.44075 1.02102 1.00861 1.85164 1.19623 0.97518 0.85888 1.36520 0.90564 1.25826 0.98601 1.01991 0.98616 1.70277 1.20313 1.27331 1.40688 0.85176 0.77234 0.79455 0.78068 1.21650 1.21937 1.18947 1.21589 0.95612 0.84614 0.92407 0.90927 1.23115 1.02929 0.93109 0.98810 1.22429 1.02806 0.97547 0.78273 1.48268 1.69521 1.07993 1.08542 1.17673 0.75578 0.83560 0.84860 1.90684 1.55978 1.85962 1.16057 1.19951 1.20035 0.91700 0.95581 1.22753 1.08242 0.96443 0.94157 1.22275 1.07988 0.94738 0.87943 1.44255 1.52848 1.09196 1.05340 1.20370 1.01278 0.87508 0.92947 1.20420 1.01956 0.99450 0.87649 1.21703 1.00083 0.92702 1.01459 1.21947 1.01627 1.00747 0.92618 1.22501 1.03481 0.78051 0.98361 1.22618 0.99058 0.81695 0.99076 0.98436 0.94800 0.95960 0.94263 0.88431 0.90909 0.89144 0.89472 0.81440 0.77684 0.90809 0.91310 0.89266 0.91141 0.91369 0.86453 0.88043 0.86657 0.93536 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 7.59 127.77 0.97 10.05 16 2 N -0.60 -30.65 2.96 -695.01 -2.06 -32.71 16 3 C -0.27 -14.77 9.63 84.04 0.81 -13.96 16 4 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 5 C -0.06 -3.16 5.07 84.86 0.43 -2.73 16 6 N -0.94 -57.13 10.66 21.65 0.23 -56.90 16 7 Si 0.97 45.76 29.58 68.60 2.03 47.79 16 8 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 C 0.17 6.99 3.54 46.38 0.16 7.15 16 12 H 0.07 3.08 7.94 -2.38 -0.02 3.06 16 13 C -0.14 -4.40 6.49 31.78 0.21 -4.19 16 14 C 0.11 3.06 4.99 86.73 0.43 3.49 16 15 N -0.61 -22.54 3.33 -815.84 -2.71 -25.25 16 16 C 0.59 22.96 7.84 86.62 0.68 23.64 16 17 O -0.60 -27.85 15.59 -4.08 -0.06 -27.92 16 18 C -0.26 -8.01 6.22 -19.12 -0.12 -8.13 16 19 C -0.19 -4.26 9.40 23.64 0.22 -4.04 16 20 C 0.00 -0.05 11.40 83.12 0.95 0.90 16 21 N -0.44 -7.61 3.11 -507.64 -1.58 -9.19 16 22 C 0.10 2.50 6.57 41.69 0.27 2.77 16 23 C -0.06 -1.35 5.32 30.07 0.16 -1.19 16 24 C -0.12 -1.66 5.97 30.78 0.18 -1.48 16 25 C -0.13 -1.08 5.94 30.77 0.18 -0.90 16 26 C 0.10 0.76 6.90 86.40 0.60 1.36 16 27 C 0.10 4.40 6.47 86.85 0.56 4.96 16 28 H 0.00 -0.15 7.39 -2.39 -0.02 -0.17 16 29 H 0.03 1.47 6.34 -2.39 -0.02 1.45 16 30 H 0.02 1.19 7.23 -2.38 -0.02 1.18 16 31 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.07 2.36 6.36 -2.39 -0.02 2.34 16 34 H 0.09 2.09 6.84 -2.39 -0.02 2.07 16 35 H 0.09 2.04 7.00 -2.38 -0.02 2.02 16 36 H 0.17 3.08 4.80 -2.91 -0.01 3.06 16 37 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.03 7.40 -2.38 -0.02 2.01 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 42 H 0.07 0.70 8.11 -2.38 -0.02 0.68 16 43 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.05 2.18 7.05 -2.39 -0.02 2.16 16 47 H 0.04 1.92 8.04 -2.39 -0.02 1.90 16 Total: -1.00 -78.35 361.58 3.51 -74.84 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.96 Total: 11.64 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.70 Total: 17.70 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.12 Total: -124.05 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.06 Total: -27.92 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -78.35 3.51 -74.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971701056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.702 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds