Wall clock time and date at job start Tue Mar 31 2020 11:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 119.99984 * 2 1 4 4 H 1.07994 * 120.00301 * 204.17174 * 3 2 1 5 5 C 1.38814 * 119.99906 * 24.17070 * 3 2 1 6 6 N 1.31627 * 119.99832 * 13.48385 * 5 3 2 7 7 Si 1.86800 * 120.00218 * 193.48048 * 5 3 2 8 8 H 1.48495 * 109.46959 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47150 * 120.00046 * 7 5 3 10 10 H 1.48500 * 109.47149 * 240.00323 * 7 5 3 11 11 C 1.46499 * 120.00039 * 180.27561 * 2 1 3 12 12 H 1.09006 * 110.64288 * 183.13881 * 11 2 1 13 13 C 1.55163 * 110.72068 * 60.00242 * 11 2 1 14 14 C 1.54909 * 101.58145 * 206.13395 * 13 11 2 15 15 N 1.47429 * 104.83166 * 37.00847 * 14 13 11 16 16 C 1.34767 * 125.64583 * 155.92122 * 15 14 13 17 17 O 1.21694 * 120.00301 * 4.79259 * 16 15 14 18 18 C 1.46686 * 119.99758 * 184.80083 * 16 15 14 19 19 C 1.38056 * 126.20146 * 174.13146 * 18 16 15 20 20 C 1.39247 * 106.97140 * 179.88244 * 19 18 16 21 21 C 1.35963 * 108.04101 * 0.43532 * 20 19 18 22 22 N 1.35115 * 108.76549 * 359.67253 * 21 20 19 23 23 H 0.96994 * 125.68407 * 180.11358 * 22 21 20 24 24 C 1.51021 * 123.84816 * 179.59245 * 21 20 19 25 25 C 1.53314 * 108.41750 * 343.32516 * 24 21 20 26 26 C 1.53108 * 109.52498 * 50.17704 * 25 24 21 27 27 C 1.50848 * 127.70436 * 180.23721 * 20 19 18 28 28 C 1.47018 * 108.70236 * 335.86893 * 15 14 13 29 29 H 1.08995 * 109.47094 * 274.92218 * 1 2 3 30 30 H 1.09003 * 109.47214 * 34.92509 * 1 2 3 31 31 H 1.09000 * 109.46891 * 154.91920 * 1 2 3 32 32 H 0.96998 * 120.00020 * 180.02562 * 6 5 3 33 33 H 1.08998 * 110.99890 * 324.20807 * 13 11 2 34 34 H 1.08993 * 111.00325 * 88.01836 * 13 11 2 35 35 H 1.08990 * 110.36396 * 155.84820 * 14 13 11 36 36 H 1.08996 * 110.36232 * 278.05965 * 14 13 11 37 37 H 1.08004 * 126.51280 * 359.97438 * 19 18 16 38 38 H 1.08998 * 109.67540 * 103.05642 * 24 21 20 39 39 H 1.09006 * 109.67360 * 223.55345 * 24 21 20 40 40 H 1.08996 * 109.46505 * 170.19514 * 25 24 21 41 41 H 1.09005 * 109.46289 * 290.16478 * 25 24 21 42 42 H 1.09005 * 109.47374 * 49.59260 * 26 25 24 43 43 H 1.09004 * 109.47452 * 169.60090 * 26 25 24 44 44 H 1.08998 * 109.68143 * 44.05801 * 27 20 19 45 45 H 1.09003 * 109.70810 * 283.52576 * 27 20 19 46 46 H 1.09002 * 109.88806 * 241.64475 * 28 15 14 47 47 H 1.09003 * 109.88113 * 120.47464 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1586 1.2270 -0.3830 5 6 1.5469 2.3354 0.4922 6 7 0.4374 2.2473 1.1950 7 14 2.3101 4.0071 0.1574 8 1 3.5451 3.8348 -0.6490 9 1 1.3441 4.8516 -0.5901 10 1 2.6484 4.6638 1.4456 11 6 2.1975 -1.2687 -0.0061 12 1 3.2717 -1.0925 0.0506 13 6 1.8436 -2.1009 -1.2670 14 6 2.1172 -3.5438 -0.7742 15 7 1.6778 -3.5516 0.6331 16 6 1.2951 -4.6396 1.3303 17 8 1.3769 -5.7446 0.8271 18 6 0.7799 -4.4917 2.6957 19 6 0.2491 -5.4962 3.4802 20 6 -0.1096 -4.9169 4.6945 21 6 0.1909 -3.5923 4.6343 22 7 0.7324 -3.3240 3.4258 23 1 1.0372 -2.4544 3.1228 24 6 -0.0614 -2.6203 5.7622 25 6 -1.0494 -3.2624 6.7431 26 6 -0.5683 -4.6699 7.1061 27 6 -0.7287 -5.5934 5.8923 28 6 1.7274 -2.1762 1.1501 29 1 -0.3633 0.0882 1.0238 30 1 -0.3634 0.8426 -0.5884 31 1 -0.3633 -0.9308 -0.4356 32 1 0.0160 3.0505 1.5387 33 1 0.7957 -1.9727 -1.5381 34 1 2.4954 -1.8422 -2.1014 35 1 1.5376 -4.2598 -1.3566 36 1 3.1807 -3.7726 -0.8426 37 1 0.1353 -6.5343 3.2049 38 1 0.8753 -2.4020 6.2750 39 1 -0.4854 -1.6983 5.3642 40 1 -1.1109 -2.6554 7.6463 41 1 -2.0339 -3.3236 6.2791 42 1 0.4814 -4.6313 7.3972 43 1 -1.1617 -5.0540 7.9359 44 1 -0.2223 -6.5399 6.0817 45 1 -1.7873 -5.7743 5.7059 46 1 2.4333 -2.1168 1.9785 47 1 0.7357 -1.8692 1.4826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972680236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:53 Heat of formation + Delta-G solvation = 28.352779 kcal Electronic energy + Delta-G solvation = -27311.186576 eV Core-core repulsion = 23687.789076 eV Total energy + Delta-G solvation = -3623.397500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56129 -39.46255 -37.45992 -36.30950 -34.84902 -32.19798 -31.73651 -30.46044 -29.08223 -28.44508 -27.95381 -26.20014 -24.60616 -23.52105 -22.45403 -21.78704 -20.77723 -19.68164 -19.53063 -18.50111 -17.29591 -17.11894 -16.07687 -15.94666 -15.24539 -15.11240 -14.79626 -14.20056 -13.91917 -13.81079 -13.64903 -13.40942 -13.29624 -13.06903 -12.87730 -12.71209 -12.51038 -12.40323 -12.17576 -11.93099 -11.77086 -11.53895 -11.06505 -10.94896 -10.94310 -10.80598 -10.71816 -10.64190 -10.55264 -10.40233 -10.07403 -9.99420 -9.80177 -8.72591 -8.72073 -8.44678 -7.79967 -6.96658 -5.91528 -3.40854 1.63779 2.74780 3.07485 3.26791 3.31120 3.35602 3.36808 3.58385 4.33052 4.63762 4.68078 4.79249 4.80841 5.00171 5.10427 5.13466 5.22178 5.28846 5.36193 5.45728 5.48675 5.50596 5.54007 5.59196 5.63689 5.76241 5.78226 5.84397 5.88694 5.92460 6.02269 6.03707 6.20615 6.21288 6.23726 6.31330 6.38924 6.49021 6.61553 6.71964 6.94964 7.10115 7.16704 7.50920 7.52682 7.64687 7.70419 8.19781 8.33743 9.03162 9.64943 10.14025 11.12631 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.004050 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.109457 B = 6912.182329 C = 8814.420874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.585 5.585 3 C -0.265 4.265 4 H 0.071 0.929 5 C 0.008 3.992 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.176 3.824 12 H 0.083 0.917 13 C -0.153 4.153 14 C 0.111 3.889 15 N -0.615 5.615 16 C 0.602 3.398 17 O -0.544 6.544 18 C -0.051 4.051 19 C -0.103 4.103 20 C -0.182 4.182 21 C 0.051 3.949 22 N -0.529 5.529 23 H 0.422 0.578 24 C -0.057 4.057 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.044 4.044 28 C 0.067 3.933 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.003 0.997 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 -10.975 8.079 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.305 5.305 3 C -0.394 4.394 4 H 0.089 0.911 5 C -0.191 4.191 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.065 3.935 12 H 0.101 0.899 13 C -0.194 4.194 14 C -0.011 4.011 15 N -0.348 5.348 16 C 0.393 3.607 17 O -0.422 6.422 18 C -0.164 4.164 19 C -0.130 4.130 20 C -0.188 4.188 21 C -0.068 4.068 22 N -0.128 5.128 23 H 0.266 0.734 24 C -0.095 4.095 25 C -0.149 4.149 26 C -0.157 4.157 27 C -0.081 4.081 28 C -0.059 4.059 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.162 0.838 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.400 -11.277 7.806 13.786 hybrid contribution 0.461 1.513 -0.282 1.606 sum -0.938 -9.764 7.523 12.362 Atomic orbital electron populations 1.20812 0.82517 0.95917 0.99505 1.43914 1.01789 0.99867 1.84962 1.19257 0.99383 0.85363 1.35374 0.91115 1.25064 0.97862 0.98760 0.97415 1.70060 1.20386 1.27656 1.36609 0.86167 0.78644 0.83987 0.77618 1.20168 1.21466 1.21616 1.21339 0.96612 0.85612 0.89901 0.89926 1.23394 1.02895 0.93059 1.00018 1.22199 0.99443 0.98388 0.81090 1.48425 1.65501 1.07363 1.13546 1.16738 0.77230 0.83304 0.83448 1.90792 1.56688 1.24586 1.70117 1.20320 1.14986 0.86852 0.94291 1.20896 1.01294 0.98204 0.92571 1.19216 1.09828 0.92704 0.97025 1.20517 1.02589 0.95978 0.87745 1.42564 1.47369 1.10584 1.12315 0.73445 1.20334 1.00386 0.96210 0.92547 1.21503 0.98791 0.96229 0.98405 1.21597 1.01563 0.95038 0.97459 1.20018 0.99734 0.97432 0.90963 1.23107 1.01374 0.81292 1.00093 0.95009 0.93776 0.97868 0.93574 0.90563 0.90123 0.90885 0.91630 0.83820 0.90262 0.90251 0.91217 0.91375 0.91783 0.91727 0.91322 0.91446 0.92262 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.56 7.51 59.85 0.45 4.01 16 2 N -0.58 -13.24 2.93 -171.39 -0.50 -13.74 16 3 C -0.26 -6.68 9.58 -15.06 -0.14 -6.82 16 4 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 5 C 0.01 0.21 5.09 -17.43 -0.09 0.13 16 6 N -0.90 -24.48 10.81 55.49 0.60 -23.88 16 7 Si 0.91 20.57 29.58 -169.99 -5.03 15.55 16 8 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.18 3.24 3.44 -66.09 -0.23 3.02 16 12 H 0.08 1.51 7.95 -51.93 -0.41 1.09 16 13 C -0.15 -2.45 6.61 -24.58 -0.16 -2.61 16 14 C 0.11 1.70 6.89 -2.53 -0.02 1.68 16 15 N -0.61 -10.35 3.33 -172.06 -0.57 -10.93 16 16 C 0.60 10.91 7.81 -12.85 -0.10 10.81 16 17 O -0.54 -11.04 17.18 5.19 0.09 -10.96 16 18 C -0.05 -0.85 6.89 -81.84 -0.56 -1.42 16 19 C -0.10 -1.58 10.63 -39.27 -0.42 -2.00 16 20 C -0.18 -2.46 5.91 -104.99 -0.62 -3.08 16 21 C 0.05 0.70 7.02 -81.81 -0.57 0.12 16 22 N -0.53 -7.99 5.59 -5.49 -0.03 -8.02 16 23 H 0.42 6.35 4.98 -40.82 -0.20 6.14 16 24 C -0.06 -0.62 6.30 -27.56 -0.17 -0.79 16 25 C -0.11 -1.01 5.89 -26.51 -0.16 -1.16 16 26 C -0.12 -1.04 5.90 -26.49 -0.16 -1.19 16 27 C -0.04 -0.45 6.28 -27.62 -0.17 -0.62 16 28 C 0.07 1.14 4.74 -3.07 -0.01 1.12 16 29 H 0.03 0.78 7.24 -51.93 -0.38 0.40 16 30 H 0.04 1.09 7.42 -51.93 -0.39 0.71 16 31 H 0.00 0.06 6.46 -51.93 -0.34 -0.28 16 32 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.08 1.30 6.45 -51.93 -0.34 0.96 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 42 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.96 7.32 -51.93 -0.38 0.58 16 47 H 0.07 1.34 5.69 -51.93 -0.30 1.04 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -29.34 364.41 -10.43 -39.77 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.34 Total: 5.53 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -3.14 Total: 1.19 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.51 Total: -56.57 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.34 -10.43 -39.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972680236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.120 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds