Wall clock time and date at job start Tue Mar 31 2020 11:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 119.99984 * 2 1 4 4 H 1.07994 * 120.00301 * 204.17174 * 3 2 1 5 5 C 1.38814 * 119.99906 * 24.17070 * 3 2 1 6 6 N 1.31627 * 119.99832 * 13.48385 * 5 3 2 7 7 Si 1.86800 * 120.00218 * 193.48048 * 5 3 2 8 8 H 1.48495 * 109.46959 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47150 * 120.00046 * 7 5 3 10 10 H 1.48500 * 109.47149 * 240.00323 * 7 5 3 11 11 C 1.46499 * 120.00039 * 180.27561 * 2 1 3 12 12 H 1.09006 * 110.64288 * 183.13881 * 11 2 1 13 13 C 1.55163 * 110.72068 * 60.00242 * 11 2 1 14 14 C 1.54909 * 101.58145 * 206.13395 * 13 11 2 15 15 N 1.47429 * 104.83166 * 37.00847 * 14 13 11 16 16 C 1.34767 * 125.64583 * 155.92122 * 15 14 13 17 17 O 1.21694 * 120.00301 * 4.79259 * 16 15 14 18 18 C 1.46686 * 119.99758 * 184.80083 * 16 15 14 19 19 C 1.38056 * 126.20146 * 174.13146 * 18 16 15 20 20 C 1.39247 * 106.97140 * 179.88244 * 19 18 16 21 21 C 1.35963 * 108.04101 * 0.43532 * 20 19 18 22 22 N 1.35115 * 108.76549 * 359.67253 * 21 20 19 23 23 H 0.96994 * 125.68407 * 180.11358 * 22 21 20 24 24 C 1.51021 * 123.84816 * 179.59245 * 21 20 19 25 25 C 1.53314 * 108.41750 * 343.32516 * 24 21 20 26 26 C 1.53108 * 109.52498 * 50.17704 * 25 24 21 27 27 C 1.50848 * 127.70436 * 180.23721 * 20 19 18 28 28 C 1.47018 * 108.70236 * 335.86893 * 15 14 13 29 29 H 1.08995 * 109.47094 * 274.92218 * 1 2 3 30 30 H 1.09003 * 109.47214 * 34.92509 * 1 2 3 31 31 H 1.09000 * 109.46891 * 154.91920 * 1 2 3 32 32 H 0.96998 * 120.00020 * 180.02562 * 6 5 3 33 33 H 1.08998 * 110.99890 * 324.20807 * 13 11 2 34 34 H 1.08993 * 111.00325 * 88.01836 * 13 11 2 35 35 H 1.08990 * 110.36396 * 155.84820 * 14 13 11 36 36 H 1.08996 * 110.36232 * 278.05965 * 14 13 11 37 37 H 1.08004 * 126.51280 * 359.97438 * 19 18 16 38 38 H 1.08998 * 109.67540 * 103.05642 * 24 21 20 39 39 H 1.09006 * 109.67360 * 223.55345 * 24 21 20 40 40 H 1.08996 * 109.46505 * 170.19514 * 25 24 21 41 41 H 1.09005 * 109.46289 * 290.16478 * 25 24 21 42 42 H 1.09005 * 109.47374 * 49.59260 * 26 25 24 43 43 H 1.09004 * 109.47452 * 169.60090 * 26 25 24 44 44 H 1.08998 * 109.68143 * 44.05801 * 27 20 19 45 45 H 1.09003 * 109.70810 * 283.52576 * 27 20 19 46 46 H 1.09002 * 109.88806 * 241.64475 * 28 15 14 47 47 H 1.09003 * 109.88113 * 120.47464 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1586 1.2270 -0.3830 5 6 1.5469 2.3354 0.4922 6 7 0.4374 2.2473 1.1950 7 14 2.3101 4.0071 0.1574 8 1 3.5451 3.8348 -0.6490 9 1 1.3441 4.8516 -0.5901 10 1 2.6484 4.6638 1.4456 11 6 2.1975 -1.2687 -0.0061 12 1 3.2717 -1.0925 0.0506 13 6 1.8436 -2.1009 -1.2670 14 6 2.1172 -3.5438 -0.7742 15 7 1.6778 -3.5516 0.6331 16 6 1.2951 -4.6396 1.3303 17 8 1.3769 -5.7446 0.8271 18 6 0.7799 -4.4917 2.6957 19 6 0.2491 -5.4962 3.4802 20 6 -0.1096 -4.9169 4.6945 21 6 0.1909 -3.5923 4.6343 22 7 0.7324 -3.3240 3.4258 23 1 1.0372 -2.4544 3.1228 24 6 -0.0614 -2.6203 5.7622 25 6 -1.0494 -3.2624 6.7431 26 6 -0.5683 -4.6699 7.1061 27 6 -0.7287 -5.5934 5.8923 28 6 1.7274 -2.1762 1.1501 29 1 -0.3633 0.0882 1.0238 30 1 -0.3634 0.8426 -0.5884 31 1 -0.3633 -0.9308 -0.4356 32 1 0.0160 3.0505 1.5387 33 1 0.7957 -1.9727 -1.5381 34 1 2.4954 -1.8422 -2.1014 35 1 1.5376 -4.2598 -1.3566 36 1 3.1807 -3.7726 -0.8426 37 1 0.1353 -6.5343 3.2049 38 1 0.8753 -2.4020 6.2750 39 1 -0.4854 -1.6983 5.3642 40 1 -1.1109 -2.6554 7.6463 41 1 -2.0339 -3.3236 6.2791 42 1 0.4814 -4.6313 7.3972 43 1 -1.1617 -5.0540 7.9359 44 1 -0.2223 -6.5399 6.0817 45 1 -1.7873 -5.7743 5.7059 46 1 2.4333 -2.1168 1.9785 47 1 0.7357 -1.8692 1.4826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972680236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:52 Heat of formation + Delta-G solvation = 13.097899 kcal Electronic energy + Delta-G solvation = -27311.848077 eV Core-core repulsion = 23687.789076 eV Total energy + Delta-G solvation = -3624.059001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.71015 -40.81622 -38.95615 -37.19124 -36.55590 -33.53144 -33.14320 -31.89903 -30.16887 -29.55126 -29.37233 -28.09677 -25.87229 -24.93836 -23.76691 -22.72538 -21.92479 -21.15417 -20.85571 -19.53667 -18.99631 -18.45412 -17.53692 -17.29774 -16.73387 -16.37425 -16.04537 -15.59833 -15.17467 -15.01436 -14.75173 -14.69449 -14.59050 -14.49270 -14.18040 -14.05537 -13.76024 -13.49707 -13.40310 -13.23744 -13.12238 -12.81433 -12.68586 -12.56972 -12.45287 -12.33078 -12.11765 -11.85640 -11.67602 -11.59169 -11.53364 -11.34399 -11.27250 -10.66614 -9.96698 -9.72928 -8.93015 -8.84403 -7.86719 -5.37677 0.37811 1.46522 1.50174 1.58600 1.64253 1.77582 2.11979 2.26235 2.49060 3.24286 3.33068 3.63673 3.69092 3.74946 3.84473 3.96445 4.06964 4.13910 4.18865 4.22988 4.34806 4.38273 4.46177 4.53186 4.65334 4.68310 4.72270 4.73967 4.74958 4.88560 4.95126 5.00803 5.07879 5.11891 5.14840 5.21915 5.25730 5.32564 5.37057 5.38563 5.53084 5.60794 5.66231 5.85833 5.97196 6.26818 6.31280 6.40003 6.95208 7.10019 7.78583 8.24102 9.15844 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.004050 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.109457 B = 6912.182329 C = 8814.420874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.596 5.596 3 C -0.268 4.268 4 H 0.076 0.924 5 C -0.042 4.042 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.266 1.266 9 H -0.295 1.295 10 H -0.293 1.293 11 C 0.169 3.831 12 H 0.088 0.912 13 C -0.139 4.139 14 C 0.112 3.888 15 N -0.614 5.614 16 C 0.600 3.400 17 O -0.573 6.573 18 C -0.082 4.082 19 C -0.109 4.109 20 C -0.185 4.185 21 C 0.050 3.950 22 N -0.532 5.532 23 H 0.419 0.581 24 C -0.059 4.059 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.045 4.045 28 C 0.082 3.918 29 H 0.009 0.991 30 H 0.016 0.984 31 H 0.024 0.976 32 H 0.249 0.751 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -11.440 9.017 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.318 5.318 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.238 4.238 6 N -0.578 5.578 7 Si 0.793 3.207 8 H -0.190 1.190 9 H -0.222 1.222 10 H -0.220 1.220 11 C 0.060 3.940 12 H 0.106 0.894 13 C -0.179 4.179 14 C -0.009 4.009 15 N -0.347 5.347 16 C 0.392 3.608 17 O -0.454 6.454 18 C -0.195 4.195 19 C -0.136 4.136 20 C -0.191 4.191 21 C -0.069 4.069 22 N -0.132 5.132 23 H 0.262 0.738 24 C -0.097 4.097 25 C -0.147 4.147 26 C -0.153 4.153 27 C -0.082 4.082 28 C -0.044 4.044 29 H 0.027 0.973 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.829 -11.764 8.727 14.671 hybrid contribution 0.295 1.596 -0.559 1.717 sum -0.534 -10.168 8.168 13.053 Atomic orbital electron populations 1.20489 0.82968 0.95699 0.97732 1.44011 1.01721 1.00778 1.85250 1.19579 0.99538 0.86410 1.34216 0.90602 1.25733 0.98547 1.01676 0.97861 1.70200 1.21731 1.27882 1.38019 0.85248 0.78038 0.80285 0.77099 1.18989 1.22168 1.22001 1.21504 0.96492 0.84446 0.91522 0.89358 1.23257 1.02614 0.92744 0.99275 1.22302 1.00568 0.97879 0.80196 1.48439 1.65230 1.06914 1.14123 1.16944 0.76885 0.83029 0.83986 1.90761 1.58173 1.25462 1.70958 1.20269 1.17047 0.87879 0.94286 1.21148 1.00879 0.98297 0.93241 1.19639 1.09301 0.92714 0.97452 1.21141 1.01211 0.96890 0.87665 1.42577 1.47706 1.10072 1.12805 0.73761 1.20502 1.01568 0.95534 0.92084 1.21533 0.97824 0.96751 0.98578 1.21597 1.02020 0.94348 0.97294 1.20142 0.99931 0.97956 0.90207 1.22827 1.00741 0.81174 0.99628 0.97269 0.96493 0.95747 0.94181 0.91629 0.88243 0.90573 0.89840 0.83491 0.89120 0.90706 0.89126 0.91769 0.91813 0.89426 0.90386 0.90696 0.91522 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.10 7.51 127.77 0.96 9.06 16 2 N -0.60 -26.84 2.93 -696.14 -2.04 -28.88 16 3 C -0.27 -13.39 9.58 84.03 0.81 -12.58 16 4 H 0.08 3.66 7.86 -2.91 -0.02 3.64 16 5 C -0.04 -2.19 5.09 84.86 0.43 -1.75 16 6 N -0.93 -51.39 10.81 21.65 0.23 -51.16 16 7 Si 0.96 42.28 29.58 68.60 2.03 44.31 16 8 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 9 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 11 C 0.17 6.06 3.44 46.18 0.16 6.22 16 12 H 0.09 3.08 7.95 -2.38 -0.02 3.06 16 13 C -0.14 -4.20 6.61 31.99 0.21 -3.99 16 14 C 0.11 3.26 6.89 86.85 0.60 3.86 16 15 N -0.61 -20.34 3.33 -816.51 -2.72 -23.05 16 16 C 0.60 21.76 7.81 86.45 0.68 22.43 16 17 O -0.57 -23.37 17.18 -4.33 -0.07 -23.45 16 18 C -0.08 -2.75 6.89 40.37 0.28 -2.47 16 19 C -0.11 -3.31 10.63 22.47 0.24 -3.07 16 20 C -0.19 -4.82 5.91 -20.10 -0.12 -4.94 16 21 C 0.05 1.34 7.02 41.63 0.29 1.63 16 22 N -0.53 -16.10 5.59 -171.30 -0.96 -17.06 16 23 H 0.42 12.75 4.98 -92.71 -0.46 12.29 16 24 C -0.06 -1.20 6.30 30.05 0.19 -1.01 16 25 C -0.11 -1.70 5.89 30.74 0.18 -1.52 16 26 C -0.12 -1.67 5.90 30.75 0.18 -1.49 16 27 C -0.04 -0.82 6.28 30.02 0.19 -0.64 16 28 C 0.08 2.75 4.74 86.73 0.41 3.16 16 29 H 0.01 0.46 7.24 -2.39 -0.02 0.44 16 30 H 0.02 0.84 7.42 -2.39 -0.02 0.82 16 31 H 0.02 0.99 6.46 -2.39 -0.02 0.98 16 32 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 33 H 0.07 2.15 6.45 -2.39 -0.02 2.13 16 34 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.07 8.11 -2.38 -0.02 1.05 16 42 H 0.06 0.95 8.11 -2.38 -0.02 0.93 16 43 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.07 2.14 7.32 -2.39 -0.02 2.12 16 47 H 0.06 2.20 5.69 -2.39 -0.01 2.19 16 Total: -1.00 -62.83 364.41 2.67 -60.16 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.51 Total: 26.24 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.68 Total: 12.89 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -5.48 Total: -120.15 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.07 Total: -23.45 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -62.83 2.67 -60.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972680236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.259 kcal (2) G-P(sol) polarization free energy of solvation -62.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds