Wall clock time and date at job start Tue Mar 31 2020 11:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35531 * 125.67596 * 2 1 4 4 C 1.35455 * 108.86808 * 180.13477 * 3 2 1 5 5 C 1.39834 * 107.86759 * 359.60831 * 4 3 2 6 6 C 1.37644 * 125.67765 * 179.69375 * 2 1 3 7 7 C 1.46686 * 126.23194 * 0.02562 * 6 2 1 8 8 O 1.21686 * 119.99925 * 354.27199 * 7 6 2 9 9 N 1.34780 * 119.99832 * 174.26605 * 7 6 2 10 10 C 1.46491 * 120.00040 * 185.07875 * 9 7 6 11 11 H 1.09003 * 109.67672 * 35.50790 * 10 9 7 12 12 C 1.53331 * 109.68078 * 275.00337 * 10 9 7 13 13 C 1.52819 * 108.09633 * 176.14719 * 12 10 9 14 14 C 1.50728 * 111.74821 * 58.91564 * 13 12 10 15 15 H 1.09000 * 109.27212 * 186.23034 * 14 13 12 16 16 C 1.53906 * 113.02328 * 65.12453 * 14 13 12 17 17 N 1.47819 * 104.06029 * 198.52473 * 16 14 13 18 18 C 1.36941 * 125.65076 * 203.30085 * 17 16 14 19 19 H 1.07994 * 119.99879 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99777 * 0.05877 * 18 17 16 21 21 N 1.31619 * 119.99812 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99927 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46820 * 60.00203 * 22 20 18 24 24 H 1.48501 * 109.46734 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46771 * 299.99939 * 22 20 18 26 26 C 1.47175 * 108.70172 * 23.35269 * 17 16 14 27 27 C 1.53999 * 113.94278 * 308.68852 * 14 13 12 28 28 H 1.08998 * 112.21017 * 280.65427 * 27 14 13 29 29 C 1.52591 * 109.68069 * 156.04896 * 10 9 7 30 30 H 1.09000 * 109.47080 * 274.19731 * 1 2 3 31 31 H 1.09005 * 109.47301 * 34.19094 * 1 2 3 32 32 H 1.09006 * 109.47352 * 154.19292 * 1 2 3 33 33 H 1.07999 * 125.56839 * 0.02562 * 3 2 1 34 34 H 1.08005 * 126.06625 * 179.86726 * 4 3 2 35 35 H 1.07996 * 126.46023 * 180.23876 * 5 4 3 36 36 H 0.97003 * 119.99740 * 5.08210 * 9 7 6 37 37 H 1.08996 * 109.73457 * 295.79879 * 12 10 9 38 38 H 1.09005 * 109.73483 * 56.49224 * 12 10 9 39 39 H 1.09005 * 109.02375 * 179.49945 * 13 12 10 40 40 H 1.09000 * 109.02513 * 298.40761 * 13 12 10 41 41 H 1.09001 * 110.51476 * 317.16949 * 16 14 13 42 42 H 1.09002 * 110.51224 * 79.88746 * 16 14 13 43 43 H 0.97004 * 119.99964 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.95786 * 241.57842 * 26 17 16 45 45 H 1.09000 * 109.96092 * 120.33925 * 26 17 16 46 46 H 1.09001 * 109.16229 * 302.49328 * 29 10 9 47 47 H 1.09004 * 109.15718 * 61.67796 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 -0.0030 5 6 3.5780 -0.6888 0.0041 6 6 2.2678 -1.1181 0.0060 7 6 1.8123 -2.5124 0.0129 8 8 0.6266 -2.7646 0.1189 9 7 2.7071 -3.5142 -0.0983 10 6 2.2453 -4.9004 -0.2034 11 1 1.3201 -4.9365 -0.7785 12 6 2.0042 -5.4721 1.1987 13 6 1.4334 -6.8814 1.0451 14 6 2.3672 -7.7815 0.2770 15 1 1.8767 -8.7378 0.0954 16 6 3.6939 -8.0408 1.0127 17 7 4.6044 -8.5221 -0.0478 18 6 5.7211 -9.2904 0.1471 19 1 6.3235 -9.5914 -0.6971 20 6 6.0783 -9.6828 1.4298 21 7 5.3440 -9.3160 2.4587 22 14 7.6013 -10.7314 1.6957 23 1 8.7961 -10.0041 1.1971 24 1 7.7615 -11.0130 3.1449 25 1 7.4563 -12.0110 0.9563 26 6 4.1126 -8.0378 -1.3476 27 6 2.8408 -7.1920 -1.0645 28 1 2.0904 -7.2962 -1.8482 29 6 3.3122 -5.7467 -0.8919 30 1 -0.3633 0.0752 1.0249 31 1 -0.3634 0.8501 -0.5775 32 1 -0.3634 -0.9252 -0.4474 33 1 1.9082 2.1236 0.0004 34 1 4.4132 1.3612 -0.0058 35 1 4.4583 -1.3144 0.0075 36 1 3.6569 -3.3172 -0.1087 37 1 2.9459 -5.5140 1.7461 38 1 1.2935 -4.8435 1.7353 39 1 1.2643 -7.3061 2.0346 40 1 0.4821 -6.8237 0.5161 41 1 4.0735 -7.1184 1.4523 42 1 3.5628 -8.8047 1.7791 43 1 5.5938 -9.5899 3.3551 44 1 3.8624 -8.8829 -1.9890 45 1 4.8721 -7.4194 -1.8259 46 1 3.5288 -5.3215 -1.8719 47 1 4.2208 -5.7362 -0.2897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979501664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:46 Heat of formation + Delta-G solvation = 13.277378 kcal Electronic energy + Delta-G solvation = -27060.039044 eV Core-core repulsion = 23435.987826 eV Total energy + Delta-G solvation = -3624.051219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.31493 -41.13968 -39.75543 -36.91855 -35.12645 -33.84225 -33.49223 -32.00659 -30.91123 -29.61630 -27.66511 -27.35787 -26.78452 -24.17482 -23.63284 -22.53123 -21.70524 -21.17136 -20.70788 -19.57849 -18.86734 -18.64273 -17.26345 -16.84496 -16.63055 -16.57224 -16.32258 -15.67484 -15.53479 -15.14112 -14.92594 -14.76319 -14.36051 -14.11619 -14.04384 -13.84826 -13.67729 -13.41915 -13.23398 -13.16204 -13.02037 -12.87858 -12.75445 -12.63276 -12.55235 -12.21890 -12.02445 -11.85159 -11.61852 -11.36735 -11.15328 -10.94934 -10.85821 -10.64304 -10.07689 -9.67297 -9.15867 -8.81487 -7.74071 -5.16642 0.49074 1.46796 1.49680 1.56024 1.69864 1.84317 2.38324 2.40950 2.51934 3.35812 3.61054 3.72283 3.78439 3.83301 4.00218 4.01215 4.19075 4.21123 4.26341 4.35983 4.39319 4.49181 4.51818 4.55838 4.57781 4.61939 4.71598 4.75706 4.87570 4.97418 5.02551 5.09254 5.14452 5.18156 5.26129 5.28508 5.31063 5.39528 5.50755 5.54043 5.61243 5.77741 5.83700 5.90862 6.02137 6.34242 6.34353 6.54269 7.14605 7.17145 7.83204 8.48147 9.27844 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021167 B = 0.002905 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.473202 B = 9635.554172 C =10213.115487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.420 5.420 3 C 0.023 3.977 4 C -0.223 4.223 5 C -0.142 4.142 6 C -0.089 4.089 7 C 0.586 3.414 8 O -0.583 6.583 9 N -0.705 5.705 10 C 0.163 3.837 11 H 0.087 0.913 12 C -0.118 4.118 13 C -0.090 4.090 14 C -0.102 4.102 15 H 0.058 0.942 16 C 0.173 3.827 17 N -0.628 5.628 18 C -0.237 4.237 19 H 0.078 0.922 20 C -0.068 4.068 21 N -0.948 5.948 22 Si 0.977 3.023 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.132 3.868 27 C -0.075 4.075 28 H 0.109 0.891 29 C -0.104 4.104 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.205 0.795 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.410 0.590 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.077 0.923 41 H -0.006 1.006 42 H 0.059 0.941 43 H 0.245 0.755 44 H 0.021 0.979 45 H 0.029 0.971 46 H 0.084 0.916 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 21.026 -7.026 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.093 5.093 3 C -0.113 4.113 4 C -0.246 4.246 5 C -0.169 4.169 6 C -0.202 4.202 7 C 0.376 3.624 8 O -0.465 6.465 9 N -0.355 5.355 10 C 0.059 3.941 11 H 0.105 0.895 12 C -0.157 4.157 13 C -0.128 4.128 14 C -0.121 4.121 15 H 0.076 0.924 16 C 0.048 3.952 17 N -0.354 5.354 18 C -0.366 4.366 19 H 0.096 0.904 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.805 3.195 23 H -0.205 1.205 24 H -0.221 1.221 25 H -0.205 1.205 26 C 0.007 3.993 27 C -0.094 4.094 28 H 0.127 0.873 29 C -0.142 4.142 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.100 0.900 33 H 0.221 0.779 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.246 0.754 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.012 0.988 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.040 0.960 45 H 0.047 0.953 46 H 0.102 0.898 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.973 20.691 -6.838 23.965 hybrid contribution 1.479 -0.847 0.641 1.821 sum -8.493 19.844 -6.197 22.457 Atomic orbital electron populations 1.22364 0.75306 1.05664 1.04346 1.44114 1.07580 1.05007 1.52644 1.22690 0.90473 0.92491 1.05630 1.21197 0.97221 0.94674 1.11496 1.21703 0.94350 0.96680 1.04153 1.20072 0.91522 0.87429 1.21150 1.17252 0.85285 0.84298 0.75562 1.90734 1.17607 1.85474 1.52705 1.45693 1.10210 1.05813 1.73736 1.20808 0.98085 0.79021 0.96168 0.89534 1.21838 1.00644 0.96205 0.97009 1.20720 0.98215 0.93709 1.00184 1.21600 0.96388 0.98300 0.95847 0.92386 1.21497 0.86480 0.96097 0.91077 1.44912 1.28044 1.59634 1.02811 1.19404 1.00971 1.23243 0.92976 0.90371 1.25590 1.02290 1.02766 0.95375 1.70090 1.40499 1.51112 0.98064 0.85172 0.79313 0.78755 0.76215 1.20451 1.22132 1.20457 1.21806 0.94386 0.95255 0.87877 1.22058 0.96410 0.93472 0.97503 0.87316 1.21633 0.97503 0.93997 1.01040 0.90282 0.86870 0.89982 0.77863 0.81927 0.82791 0.75354 0.93060 0.92278 0.92434 0.90420 0.98790 0.92294 0.94562 0.96049 0.95319 0.89792 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 10.63 127.77 1.36 2.36 16 2 N -0.42 -8.34 3.16 -534.29 -1.69 -10.03 16 3 C 0.02 0.34 11.38 83.48 0.95 1.29 16 4 C -0.22 -3.67 10.81 22.01 0.24 -3.44 16 5 C -0.14 -2.88 10.36 22.57 0.23 -2.65 16 6 C -0.09 -2.14 6.88 40.35 0.28 -1.86 16 7 C 0.59 16.38 7.73 86.45 0.67 17.05 16 8 O -0.58 -19.18 14.38 -4.30 -0.06 -19.24 16 9 N -0.70 -17.96 5.08 -446.63 -2.27 -20.23 16 10 C 0.16 4.55 2.38 44.97 0.11 4.65 16 11 H 0.09 2.45 7.68 -2.39 -0.02 2.43 16 12 C -0.12 -3.72 5.40 30.65 0.17 -3.56 16 13 C -0.09 -2.86 5.37 29.80 0.16 -2.70 16 14 C -0.10 -3.77 2.81 -10.89 -0.03 -3.80 16 15 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 16 C 0.17 8.48 4.79 86.43 0.41 8.89 16 17 N -0.63 -32.25 3.41 -690.53 -2.35 -34.60 16 18 C -0.24 -13.36 10.28 84.03 0.86 -12.49 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 21 N -0.95 -57.07 10.11 21.65 0.22 -56.85 16 22 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 C 0.13 5.31 6.54 87.06 0.57 5.88 16 27 C -0.08 -2.42 3.61 -9.65 -0.03 -2.46 16 28 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 29 C -0.10 -3.00 4.10 30.46 0.12 -2.88 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.08 1.70 6.23 -2.38 -0.01 1.69 16 33 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.15 2.61 7.45 -2.91 -0.02 2.59 16 36 H 0.41 8.96 7.50 -92.71 -0.70 8.27 16 37 H 0.05 1.83 6.80 -2.39 -0.02 1.81 16 38 H 0.06 1.89 8.13 -2.38 -0.02 1.87 16 39 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H -0.01 -0.30 6.15 -2.39 -0.01 -0.32 16 42 H 0.06 3.38 5.96 -2.39 -0.01 3.36 16 43 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.03 1.13 7.74 -2.39 -0.02 1.11 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 1.83 7.16 -2.38 -0.02 1.81 16 Total: -1.00 -72.26 363.76 2.68 -69.58 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.27 Total: 22.36 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 6.53 Total: 0.88 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -6.09 Total: -121.72 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.06 Total: -19.24 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -72.26 2.68 -69.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979501664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.859 kcal (2) G-P(sol) polarization free energy of solvation -72.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds