Wall clock time and date at job start Tue Mar 31 2020 11:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35541 * 125.68157 * 2 1 4 4 C 1.35446 * 108.87199 * 180.30529 * 3 2 1 5 5 C 1.39837 * 107.86768 * 359.73152 * 4 3 2 6 6 C 1.37653 * 125.67763 * 179.84646 * 2 1 3 7 7 C 1.46678 * 126.23419 * 359.95979 * 6 2 1 8 8 O 1.21697 * 119.99802 * 4.46911 * 7 6 2 9 9 N 1.34771 * 120.00061 * 184.46431 * 7 6 2 10 10 C 1.46501 * 119.99784 * 174.45833 * 9 7 6 11 11 H 1.09000 * 109.03109 * 36.04689 * 10 9 7 12 12 C 1.52524 * 108.98812 * 277.12081 * 10 9 7 13 13 C 1.53815 * 111.70767 * 185.43561 * 12 10 9 14 14 C 1.51617 * 107.02163 * 57.53259 * 13 12 10 15 15 H 1.09005 * 110.50741 * 55.21288 * 14 13 12 16 16 C 1.53065 * 116.67410 * 183.74627 * 14 13 12 17 17 N 1.48659 * 103.44570 * 155.88502 * 16 14 13 18 18 C 1.36935 * 125.78393 * 155.59198 * 17 16 14 19 19 H 1.07996 * 120.00054 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99875 * 0.02562 * 18 17 16 21 21 N 1.31609 * 120.00278 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99788 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47077 * 60.00475 * 22 20 18 24 24 H 1.48497 * 109.47243 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47453 * 300.00370 * 22 20 18 26 26 C 1.48242 * 108.43181 * 335.62624 * 17 16 14 27 27 C 1.52336 * 105.86450 * 356.81298 * 26 17 16 28 28 H 1.09001 * 110.24168 * 272.18079 * 27 26 17 29 29 C 1.51441 * 117.44907 * 145.32170 * 27 26 17 30 30 H 1.09005 * 109.47153 * 271.79873 * 1 2 3 31 31 H 1.08999 * 109.47089 * 31.79697 * 1 2 3 32 32 H 1.08998 * 109.47181 * 151.79511 * 1 2 3 33 33 H 1.07998 * 125.55778 * 0.02562 * 3 2 1 34 34 H 1.08000 * 126.06999 * 179.69418 * 4 3 2 35 35 H 1.07995 * 126.45689 * 180.02562 * 5 4 3 36 36 H 0.96996 * 119.99998 * 354.46556 * 9 7 6 37 37 H 1.08993 * 109.03285 * 306.00841 * 12 10 9 38 38 H 1.08995 * 109.03182 * 64.86193 * 12 10 9 39 39 H 1.09000 * 109.94189 * 176.91460 * 13 12 10 40 40 H 1.09007 * 109.94242 * 298.15754 * 13 12 10 41 41 H 1.08999 * 110.63281 * 274.37821 * 16 14 13 42 42 H 1.09001 * 110.62428 * 37.39466 * 16 14 13 43 43 H 0.97001 * 120.00420 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.16980 * 237.71621 * 26 17 16 45 45 H 1.08991 * 110.17223 * 115.91503 * 26 17 16 46 46 H 1.09004 * 109.93866 * 300.60114 * 29 27 26 47 47 H 1.09002 * 109.93764 * 61.83831 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7093 -0.0068 5 6 3.5780 -0.6889 -0.0050 6 6 2.2678 -1.1182 0.0030 7 6 1.8124 -2.5124 0.0076 8 8 0.6246 -2.7648 -0.0731 9 7 2.7093 -3.5140 0.1010 10 6 2.2498 -4.8993 0.2279 11 1 1.3480 -5.0308 -0.3701 12 6 1.9224 -5.1815 1.6906 13 6 1.5610 -6.6592 1.9179 14 6 2.7407 -7.4832 1.4401 15 1 3.6555 -7.1665 1.9410 16 6 2.5790 -9.0047 1.4843 17 7 3.5441 -9.4847 0.4605 18 6 4.1246 -10.7245 0.4264 19 1 4.8165 -10.9752 -0.3640 20 6 3.8236 -11.6590 1.4077 21 7 2.9800 -11.3537 2.3706 22 14 4.6149 -13.3505 1.3607 23 1 6.0909 -13.2088 1.4409 24 1 4.1321 -14.1550 2.5117 25 1 4.2512 -14.0321 0.0925 26 6 3.7723 -8.3935 -0.5166 27 6 2.8484 -7.2577 -0.0958 28 1 1.8686 -7.3776 -0.5581 29 6 3.3447 -5.8417 -0.3010 30 1 -0.3634 0.0323 1.0272 31 1 -0.3633 0.8734 -0.5415 32 1 -0.3633 -0.9056 -0.4857 33 1 1.9082 2.1236 0.0004 34 1 4.4132 1.3611 -0.0132 35 1 4.4583 -1.3144 -0.0088 36 1 3.6590 -3.3176 0.0843 37 1 2.7875 -4.9289 2.3036 38 1 1.0803 -4.5591 1.9929 39 1 1.3861 -6.8403 2.9784 40 1 0.6708 -6.9168 1.3439 41 1 2.8409 -9.3903 2.4696 42 1 1.5617 -9.2906 1.2170 43 1 2.7693 -12.0068 3.0561 44 1 3.5198 -8.7305 -1.5221 45 1 4.8113 -8.0665 -0.4790 46 1 4.2689 -5.6874 0.2560 47 1 3.5136 -5.6571 -1.3619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979501667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:50 Heat of formation + Delta-G solvation = 15.253798 kcal Electronic energy + Delta-G solvation = -26641.690762 eV Core-core repulsion = 23017.725247 eV Total energy + Delta-G solvation = -3623.965515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.30597 -41.09454 -39.75927 -37.10439 -35.15948 -33.83954 -33.41275 -32.12143 -30.87894 -29.68815 -27.72674 -27.35788 -26.75066 -23.96302 -23.53124 -21.90669 -21.54248 -21.23062 -21.08112 -20.34548 -18.87057 -18.72771 -17.11489 -16.91399 -16.63482 -16.56585 -15.85178 -15.72789 -15.58995 -15.33219 -15.02257 -14.79295 -14.38486 -14.12440 -14.10196 -13.62261 -13.52628 -13.44449 -13.26257 -13.15224 -13.09433 -12.91834 -12.84538 -12.72607 -12.63988 -12.13455 -11.95689 -11.75981 -11.70610 -11.48474 -11.22335 -10.97013 -10.79586 -10.68825 -10.10589 -9.65872 -9.14793 -8.86601 -7.74711 -5.18567 0.50207 1.46662 1.50184 1.56448 1.69541 1.86212 2.38045 2.41376 2.51482 3.34823 3.56519 3.64006 3.68327 3.77493 3.98786 4.01013 4.11148 4.22049 4.35108 4.37934 4.44150 4.46342 4.51389 4.56394 4.58558 4.68861 4.72534 4.75563 4.79145 4.96712 5.01485 5.06768 5.13526 5.18857 5.21277 5.26235 5.30780 5.38219 5.46992 5.50588 5.57050 5.75375 5.85225 5.85400 6.04715 6.30972 6.34420 6.56436 7.11017 7.19718 7.78379 8.45413 9.27533 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037963 B = 0.002393 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.376819 B =11695.599778 C =12022.197731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.422 5.422 3 C 0.020 3.980 4 C -0.222 4.222 5 C -0.136 4.136 6 C -0.091 4.091 7 C 0.585 3.415 8 O -0.588 6.588 9 N -0.701 5.701 10 C 0.160 3.840 11 H 0.069 0.931 12 C -0.113 4.113 13 C -0.092 4.092 14 C -0.102 4.102 15 H 0.072 0.928 16 C 0.167 3.833 17 N -0.633 5.633 18 C -0.237 4.237 19 H 0.081 0.919 20 C -0.071 4.071 21 N -0.950 5.950 22 Si 0.980 3.020 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.280 1.280 26 C 0.140 3.860 27 C -0.090 4.090 28 H 0.063 0.937 29 C -0.093 4.093 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.201 0.799 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.415 0.585 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.068 0.932 42 H -0.017 1.017 43 H 0.246 0.754 44 H 0.024 0.976 45 H 0.035 0.965 46 H 0.086 0.914 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 27.892 -4.354 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.095 5.095 3 C -0.116 4.116 4 C -0.245 4.245 5 C -0.163 4.163 6 C -0.203 4.203 7 C 0.375 3.625 8 O -0.470 6.470 9 N -0.352 5.352 10 C 0.056 3.944 11 H 0.087 0.913 12 C -0.152 4.152 13 C -0.131 4.131 14 C -0.121 4.121 15 H 0.090 0.910 16 C 0.043 3.957 17 N -0.360 5.360 18 C -0.366 4.366 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.206 1.206 26 C 0.016 3.984 27 C -0.110 4.110 28 H 0.082 0.918 29 C -0.131 4.131 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.218 0.782 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.253 0.747 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.001 0.999 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.104 0.896 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.339 27.481 -4.310 27.849 hybrid contribution 0.342 -1.377 0.132 1.425 sum -0.996 26.104 -4.178 26.455 Atomic orbital electron populations 1.22361 0.75577 1.05697 1.04245 1.44118 1.07471 1.05183 1.52737 1.22694 0.90665 0.92430 1.05766 1.21206 0.97031 0.94892 1.11370 1.21735 0.94281 0.96525 1.03780 1.20087 0.91617 0.87291 1.21341 1.17311 0.85322 0.84490 0.75392 1.90751 1.17832 1.85437 1.53020 1.45610 1.10274 1.05513 1.73767 1.20871 0.97794 0.79502 0.96259 0.91317 1.21781 1.01680 0.95552 0.96161 1.21187 0.96941 0.93771 1.01216 1.22172 0.98824 0.95217 0.95904 0.90973 1.21376 0.89699 0.90098 0.94539 1.45481 1.50962 1.11225 1.28288 1.19443 1.19648 0.89271 1.08244 0.90162 1.25640 1.00725 1.02284 0.97681 1.70072 1.39220 1.34690 1.16062 0.85123 0.78104 0.79227 0.76706 1.20117 1.22054 1.20604 1.21129 0.97202 0.88112 0.91990 1.21597 0.98988 0.93966 0.96443 0.91822 1.21431 0.97864 0.91409 1.02387 0.90379 0.86968 0.90012 0.78183 0.81836 0.82005 0.74714 0.90827 0.92616 0.91498 0.92520 0.91365 0.99858 0.94459 0.95798 0.94733 0.89580 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 10.68 127.77 1.36 2.29 16 2 N -0.42 -7.64 3.16 -534.32 -1.69 -9.33 16 3 C 0.02 0.26 11.38 83.47 0.95 1.21 16 4 C -0.22 -3.01 10.81 22.01 0.24 -2.77 16 5 C -0.14 -2.23 10.36 22.57 0.23 -2.00 16 6 C -0.09 -1.92 6.89 40.35 0.28 -1.65 16 7 C 0.59 14.70 7.70 86.45 0.67 15.36 16 8 O -0.59 -18.65 14.25 -4.34 -0.06 -18.71 16 9 N -0.70 -14.55 5.04 -445.90 -2.25 -16.80 16 10 C 0.16 3.92 2.46 45.12 0.11 4.04 16 11 H 0.07 1.99 7.51 -2.39 -0.02 1.97 16 12 C -0.11 -2.96 5.34 30.71 0.16 -2.79 16 13 C -0.09 -2.90 5.71 30.42 0.17 -2.73 16 14 C -0.10 -3.77 2.50 -10.33 -0.03 -3.79 16 15 H 0.07 2.66 8.01 -2.38 -0.02 2.64 16 16 C 0.17 8.43 5.53 85.98 0.48 8.91 16 17 N -0.63 -33.35 3.45 -693.07 -2.39 -35.74 16 18 C -0.24 -13.56 10.30 84.03 0.87 -12.70 16 19 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 20 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 21 N -0.95 -57.92 10.11 21.65 0.22 -57.70 16 22 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 C 0.14 5.75 6.98 85.82 0.60 6.35 16 27 C -0.09 -3.02 2.31 -10.62 -0.02 -3.04 16 28 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 29 C -0.09 -2.22 5.15 30.37 0.16 -2.06 16 30 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.68 6.14 -2.39 -0.01 1.66 16 33 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.16 1.84 7.45 -2.91 -0.02 1.82 16 36 H 0.42 6.18 7.49 -92.71 -0.69 5.49 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 1.84 7.98 -2.38 -0.02 1.83 16 41 H 0.07 3.93 5.93 -2.39 -0.01 3.91 16 42 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 46 H 0.09 1.86 8.03 -2.38 -0.02 1.84 16 47 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.54 368.38 2.81 -71.73 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.27 Total: 17.11 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 6.69 Total: 0.98 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -6.11 Total: -119.57 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.06 Total: -18.71 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.54 2.81 -71.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979501667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.982 kcal (2) G-P(sol) polarization free energy of solvation -74.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds