Wall clock time and date at job start Tue Mar 31 2020 11:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35527 * 125.67737 * 2 1 4 4 C 1.35448 * 108.87407 * 180.25850 * 3 2 1 5 5 C 1.39840 * 107.86511 * 359.76761 * 4 3 2 6 6 C 1.37647 * 125.67861 * 179.85732 * 2 1 3 7 7 C 1.46686 * 126.23484 * 0.02562 * 6 2 1 8 8 O 1.21693 * 119.99388 * 4.41251 * 7 6 2 9 9 N 1.34770 * 119.99964 * 184.41081 * 7 6 2 10 10 C 1.46506 * 119.99861 * 174.41692 * 9 7 6 11 11 H 1.08998 * 109.01934 * 33.93426 * 10 9 7 12 12 C 1.52526 * 109.03216 * 275.00042 * 10 9 7 13 13 C 1.53851 * 111.65077 * 293.54981 * 12 10 9 14 14 C 1.51441 * 107.03378 * 302.79761 * 13 12 10 15 15 H 1.09002 * 109.86974 * 305.82705 * 14 13 12 16 16 C 1.52323 * 117.81016 * 178.99911 * 14 13 12 17 17 N 1.48243 * 105.86502 * 214.48972 * 16 14 13 18 18 C 1.36936 * 125.78679 * 183.20953 * 17 16 14 19 19 H 1.07999 * 120.00272 * 179.97438 * 18 17 16 20 20 C 1.38820 * 119.99796 * 359.97147 * 18 17 16 21 21 N 1.31613 * 119.99573 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99881 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47067 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47131 * 120.00050 * 22 20 18 25 25 H 1.48503 * 109.46647 * 239.99731 * 22 20 18 26 26 C 1.48667 * 108.43107 * 3.18332 * 17 16 14 27 27 C 1.53064 * 103.44501 * 24.37920 * 26 17 16 28 28 H 1.08999 * 111.36719 * 75.99610 * 27 26 17 29 29 C 1.51619 * 116.66864 * 204.13217 * 27 26 17 30 30 H 1.08997 * 109.47674 * 270.94119 * 1 2 3 31 31 H 1.08997 * 109.47104 * 30.94966 * 1 2 3 32 32 H 1.09004 * 109.46680 * 150.94289 * 1 2 3 33 33 H 1.08004 * 125.56544 * 359.97438 * 3 2 1 34 34 H 1.08003 * 126.07067 * 179.78400 * 4 3 2 35 35 H 1.07991 * 126.46057 * 180.02562 * 5 4 3 36 36 H 0.96997 * 120.00264 * 354.41477 * 9 7 6 37 37 H 1.08996 * 109.04614 * 172.99162 * 12 10 9 38 38 H 1.09001 * 109.04507 * 54.10039 * 12 10 9 39 39 H 1.09001 * 109.93848 * 183.42181 * 13 12 10 40 40 H 1.08998 * 109.94038 * 62.17804 * 13 12 10 41 41 H 1.08999 * 110.16952 * 333.58449 * 16 14 13 42 42 H 1.08991 * 110.17341 * 95.31258 * 16 14 13 43 43 H 0.97004 * 119.99532 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.62334 * 265.89027 * 26 17 16 45 45 H 1.09004 * 110.62213 * 142.87313 * 26 17 16 46 46 H 1.09008 * 109.93958 * 295.60996 * 29 27 26 47 47 H 1.08992 * 109.94142 * 56.84797 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7094 -0.0058 5 6 3.5780 -0.6888 -0.0042 6 6 2.2678 -1.1181 0.0028 7 6 1.8124 -2.5125 0.0057 8 8 0.6247 -2.7647 -0.0752 9 7 2.7094 -3.5141 0.0980 10 6 2.2500 -4.8995 0.2243 11 1 1.3272 -5.0208 -0.3431 12 6 1.9734 -5.1999 1.6939 13 6 3.2642 -5.1763 2.5307 14 6 4.2102 -6.1863 1.9156 15 1 3.7200 -7.1572 1.8438 16 6 5.5871 -6.3466 2.5469 17 7 6.5145 -6.6387 1.4279 18 6 7.8501 -6.9166 1.5465 19 1 8.4405 -7.1169 0.6646 20 6 8.4454 -6.9408 2.8004 21 7 7.7260 -6.6961 3.8750 22 14 10.2674 -7.3192 2.9621 23 1 10.8454 -7.5556 1.6148 24 1 10.9567 -6.1702 3.6023 25 1 10.4485 -8.5332 3.7980 26 6 5.7487 -6.5793 0.1550 27 6 4.5672 -5.6667 0.4928 28 1 4.8713 -4.6207 0.5298 29 6 3.3194 -5.8276 -0.3533 30 1 -0.3634 0.0169 1.0275 31 1 -0.3633 0.8813 -0.5285 32 1 -0.3633 -0.8984 -0.4991 33 1 1.9082 2.1236 -0.0004 34 1 4.4132 1.3612 -0.0105 35 1 4.4583 -1.3144 -0.0072 36 1 3.6591 -3.3178 0.0809 37 1 1.5147 -6.1853 1.7753 38 1 1.2821 -4.4536 2.0855 39 1 3.0439 -5.4532 3.5617 40 1 3.7098 -4.1821 2.4988 41 1 5.8809 -5.4240 3.0474 42 1 5.5811 -7.1734 3.2571 43 1 8.1420 -6.7127 4.7512 44 1 5.3984 -7.5717 -0.1289 45 1 6.3559 -6.1437 -0.6384 46 1 3.5328 -5.5530 -1.3864 47 1 2.9689 -6.8586 -0.3066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979501668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:55 Heat of formation + Delta-G solvation = 36.961972 kcal Electronic energy + Delta-G solvation = -27296.907204 eV Core-core repulsion = 23673.883027 eV Total energy + Delta-G solvation = -3623.024178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49229 -40.07801 -38.39208 -35.64790 -33.56044 -32.73569 -31.82898 -30.87024 -29.46274 -28.49812 -26.63539 -26.26502 -25.04999 -23.06820 -21.97264 -20.90859 -20.51391 -19.88542 -19.67111 -18.85320 -18.01383 -16.70755 -16.00926 -15.81699 -15.64235 -15.01188 -14.77971 -14.32198 -14.07573 -14.02343 -13.64521 -13.46319 -13.39009 -13.18465 -12.77928 -12.51461 -12.43500 -12.21456 -12.18359 -12.10093 -11.93133 -11.41229 -11.17020 -11.01502 -10.81007 -10.77142 -10.63501 -9.98756 -9.96521 -9.87468 -9.82171 -9.47890 -9.35914 -8.95577 -8.86929 -8.57977 -8.32605 -6.79418 -5.67019 -2.99852 1.38985 2.52539 2.63387 3.33354 3.40159 3.41931 3.47412 3.49864 4.51660 4.63699 4.67817 4.82741 4.88139 4.94000 5.03408 5.06508 5.27245 5.29134 5.32502 5.38029 5.44789 5.55461 5.66033 5.69174 5.75339 5.85330 5.95245 5.99955 6.05605 6.16340 6.18260 6.26210 6.29440 6.38499 6.50107 6.59050 6.62978 6.66494 6.68562 6.85173 6.86401 7.02292 7.05912 7.53838 7.59446 7.68583 7.87050 8.19365 8.26534 9.24149 9.84870 10.52831 11.44870 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.003256 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.802778 B = 8597.405400 C = 9456.113131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.413 5.413 3 C 0.010 3.990 4 C -0.207 4.207 5 C -0.138 4.138 6 C -0.053 4.053 7 C 0.590 3.410 8 O -0.559 6.559 9 N -0.707 5.707 10 C 0.153 3.847 11 H 0.085 0.915 12 C -0.126 4.126 13 C -0.098 4.098 14 C -0.116 4.116 15 H 0.063 0.937 16 C 0.189 3.811 17 N -0.609 5.609 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.143 3.857 27 C -0.108 4.108 28 H 0.070 0.930 29 C -0.112 4.112 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.404 0.596 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.250 0.750 44 H 0.021 0.979 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 12.394 -8.099 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.086 5.086 3 C -0.126 4.126 4 C -0.231 4.231 5 C -0.165 4.165 6 C -0.166 4.166 7 C 0.378 3.622 8 O -0.439 6.439 9 N -0.359 5.359 10 C 0.049 3.951 11 H 0.103 0.897 12 C -0.164 4.164 13 C -0.136 4.136 14 C -0.135 4.135 15 H 0.081 0.919 16 C 0.064 3.936 17 N -0.336 5.336 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.127 4.127 28 H 0.089 0.911 29 C -0.151 4.151 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.184 0.816 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.241 0.759 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.631 12.126 -7.974 21.330 hybrid contribution 1.471 0.051 0.282 1.498 sum -14.160 12.177 -7.692 20.198 Atomic orbital electron populations 1.22282 0.76284 1.05291 1.03783 1.43833 1.06725 1.05000 1.52994 1.22005 0.90776 0.91448 1.08335 1.20847 0.96008 0.95097 1.11109 1.21438 0.94592 0.95624 1.04831 1.20119 0.90464 0.87707 1.18329 1.16982 0.85651 0.83565 0.75980 1.90734 1.16360 1.84940 1.51914 1.45930 1.09967 1.06359 1.73667 1.20935 0.98062 0.79546 0.96549 0.89659 1.21940 0.98281 1.01772 0.94441 1.21220 0.94528 0.99367 0.98525 1.22160 0.97911 0.97570 0.95881 0.91886 1.20787 0.83362 1.00025 0.89377 1.45101 1.05357 1.83177 0.99971 1.19110 0.83084 1.40258 0.92848 0.90500 1.24782 0.98044 1.02308 0.95488 1.69975 1.33933 1.55771 0.97254 0.86072 0.84924 0.77503 0.77445 1.20575 1.21827 1.21867 1.21284 0.91253 0.95487 0.90266 1.22051 0.94476 0.99825 0.96366 0.91137 1.21502 0.94840 0.99596 0.99127 0.90790 0.90141 0.87633 0.81561 0.83967 0.83718 0.75869 0.91258 0.92151 0.91969 0.92063 0.94428 0.93276 0.93924 0.96140 0.94336 0.91422 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 10.65 59.85 0.64 1.20 16 2 N -0.41 -4.61 3.16 -120.23 -0.38 -4.99 16 3 C 0.01 0.09 11.38 -16.92 -0.19 -0.10 16 4 C -0.21 -2.16 10.81 -39.98 -0.43 -2.59 16 5 C -0.14 -1.64 10.36 -39.12 -0.41 -2.05 16 6 C -0.05 -0.68 6.89 -81.98 -0.56 -1.25 16 7 C 0.59 8.24 7.72 -12.85 -0.10 8.14 16 8 O -0.56 -8.88 14.23 5.19 0.07 -8.81 16 9 N -0.71 -9.01 4.63 -55.38 -0.26 -9.27 16 10 C 0.15 1.95 2.74 -68.21 -0.19 1.76 16 11 H 0.09 1.12 7.44 -51.93 -0.39 0.73 16 12 C -0.13 -1.67 5.42 -26.53 -0.14 -1.82 16 13 C -0.10 -1.51 5.59 -27.08 -0.15 -1.66 16 14 C -0.12 -2.06 2.29 -90.36 -0.21 -2.27 16 15 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 16 C 0.19 4.49 5.08 -3.43 -0.02 4.47 16 17 N -0.61 -15.32 3.45 -170.41 -0.59 -15.91 16 18 C -0.22 -6.24 10.30 -15.06 -0.16 -6.39 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.07 10.36 55.49 0.58 -26.49 16 22 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C 0.14 2.84 6.90 -2.81 -0.02 2.82 16 27 C -0.11 -1.74 2.42 -89.89 -0.22 -1.95 16 28 H 0.07 1.15 6.24 -51.93 -0.32 0.82 16 29 C -0.11 -1.43 5.30 -27.47 -0.15 -1.58 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 1.11 6.19 -51.93 -0.32 0.79 16 33 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.15 1.54 7.45 -52.49 -0.39 1.15 16 36 H 0.40 4.90 5.71 -40.82 -0.23 4.66 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.97 7.90 -51.93 -0.41 0.56 16 41 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 42 H 0.05 1.32 7.30 -51.93 -0.38 0.94 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 47 H 0.08 0.98 7.98 -51.93 -0.41 0.57 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -32.61 365.16 -9.93 -42.54 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.44 Total: 3.96 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.40 Total: -3.66 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.65 Total: -56.66 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.61 -9.93 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979501668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.506 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds