Wall clock time and date at job start Tue Mar 31 2020 11:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35527 * 125.67737 * 2 1 4 4 C 1.35448 * 108.87407 * 180.25850 * 3 2 1 5 5 C 1.39840 * 107.86511 * 359.76761 * 4 3 2 6 6 C 1.37647 * 125.67861 * 179.85732 * 2 1 3 7 7 C 1.46686 * 126.23484 * 0.02562 * 6 2 1 8 8 O 1.21693 * 119.99388 * 4.41251 * 7 6 2 9 9 N 1.34770 * 119.99964 * 184.41081 * 7 6 2 10 10 C 1.46506 * 119.99861 * 174.41692 * 9 7 6 11 11 H 1.08998 * 109.01934 * 33.93426 * 10 9 7 12 12 C 1.52526 * 109.03216 * 275.00042 * 10 9 7 13 13 C 1.53851 * 111.65077 * 293.54981 * 12 10 9 14 14 C 1.51441 * 107.03378 * 302.79761 * 13 12 10 15 15 H 1.09002 * 109.86974 * 305.82705 * 14 13 12 16 16 C 1.52323 * 117.81016 * 178.99911 * 14 13 12 17 17 N 1.48243 * 105.86502 * 214.48972 * 16 14 13 18 18 C 1.36936 * 125.78679 * 183.20953 * 17 16 14 19 19 H 1.07999 * 120.00272 * 179.97438 * 18 17 16 20 20 C 1.38820 * 119.99796 * 359.97147 * 18 17 16 21 21 N 1.31613 * 119.99573 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99881 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47067 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47131 * 120.00050 * 22 20 18 25 25 H 1.48503 * 109.46647 * 239.99731 * 22 20 18 26 26 C 1.48667 * 108.43107 * 3.18332 * 17 16 14 27 27 C 1.53064 * 103.44501 * 24.37920 * 26 17 16 28 28 H 1.08999 * 111.36719 * 75.99610 * 27 26 17 29 29 C 1.51619 * 116.66864 * 204.13217 * 27 26 17 30 30 H 1.08997 * 109.47674 * 270.94119 * 1 2 3 31 31 H 1.08997 * 109.47104 * 30.94966 * 1 2 3 32 32 H 1.09004 * 109.46680 * 150.94289 * 1 2 3 33 33 H 1.08004 * 125.56544 * 359.97438 * 3 2 1 34 34 H 1.08003 * 126.07067 * 179.78400 * 4 3 2 35 35 H 1.07991 * 126.46057 * 180.02562 * 5 4 3 36 36 H 0.96997 * 120.00264 * 354.41477 * 9 7 6 37 37 H 1.08996 * 109.04614 * 172.99162 * 12 10 9 38 38 H 1.09001 * 109.04507 * 54.10039 * 12 10 9 39 39 H 1.09001 * 109.93848 * 183.42181 * 13 12 10 40 40 H 1.08998 * 109.94038 * 62.17804 * 13 12 10 41 41 H 1.08999 * 110.16952 * 333.58449 * 16 14 13 42 42 H 1.08991 * 110.17341 * 95.31258 * 16 14 13 43 43 H 0.97004 * 119.99532 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.62334 * 265.89027 * 26 17 16 45 45 H 1.09004 * 110.62213 * 142.87313 * 26 17 16 46 46 H 1.09008 * 109.93958 * 295.60996 * 29 27 26 47 47 H 1.08992 * 109.94142 * 56.84797 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7094 -0.0058 5 6 3.5780 -0.6888 -0.0042 6 6 2.2678 -1.1181 0.0028 7 6 1.8124 -2.5125 0.0057 8 8 0.6247 -2.7647 -0.0752 9 7 2.7094 -3.5141 0.0980 10 6 2.2500 -4.8995 0.2243 11 1 1.3272 -5.0208 -0.3431 12 6 1.9734 -5.1999 1.6939 13 6 3.2642 -5.1763 2.5307 14 6 4.2102 -6.1863 1.9156 15 1 3.7200 -7.1572 1.8438 16 6 5.5871 -6.3466 2.5469 17 7 6.5145 -6.6387 1.4279 18 6 7.8501 -6.9166 1.5465 19 1 8.4405 -7.1169 0.6646 20 6 8.4454 -6.9408 2.8004 21 7 7.7260 -6.6961 3.8750 22 14 10.2674 -7.3192 2.9621 23 1 10.8454 -7.5556 1.6148 24 1 10.9567 -6.1702 3.6023 25 1 10.4485 -8.5332 3.7980 26 6 5.7487 -6.5793 0.1550 27 6 4.5672 -5.6667 0.4928 28 1 4.8713 -4.6207 0.5298 29 6 3.3194 -5.8276 -0.3533 30 1 -0.3634 0.0169 1.0275 31 1 -0.3633 0.8813 -0.5285 32 1 -0.3633 -0.8984 -0.4991 33 1 1.9082 2.1236 -0.0004 34 1 4.4132 1.3612 -0.0105 35 1 4.4583 -1.3144 -0.0072 36 1 3.6591 -3.3178 0.0809 37 1 1.5147 -6.1853 1.7753 38 1 1.2821 -4.4536 2.0855 39 1 3.0439 -5.4532 3.5617 40 1 3.7098 -4.1821 2.4988 41 1 5.8809 -5.4240 3.0474 42 1 5.5811 -7.1734 3.2571 43 1 8.1420 -6.7127 4.7512 44 1 5.3984 -7.5717 -0.1289 45 1 6.3559 -6.1437 -0.6384 46 1 3.5328 -5.5530 -1.3864 47 1 2.9689 -6.8586 -0.3066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979501668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:54 Heat of formation + Delta-G solvation = 17.797748 kcal Electronic energy + Delta-G solvation = -27297.738227 eV Core-core repulsion = 23673.883027 eV Total energy + Delta-G solvation = -3623.855201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34273 -41.27294 -39.62566 -37.11135 -34.88456 -33.83842 -33.33252 -32.13375 -30.87199 -29.72548 -27.79913 -27.35243 -26.84015 -24.05123 -23.54102 -22.03199 -21.58905 -21.38370 -20.70906 -20.07486 -18.88035 -18.74170 -17.09523 -16.87334 -16.67723 -16.53751 -16.00498 -15.69029 -15.45398 -15.25709 -14.85093 -14.70504 -14.41112 -14.32027 -14.11810 -13.66576 -13.63906 -13.39794 -13.25379 -13.15812 -12.97610 -12.87618 -12.81439 -12.64062 -12.45759 -12.39577 -11.97715 -11.85939 -11.74397 -11.38690 -11.00813 -10.99161 -10.78845 -10.67174 -10.05886 -9.67344 -9.15746 -8.85772 -7.81194 -5.15757 0.49100 1.46868 1.47577 1.57886 1.71791 1.84359 2.38951 2.46853 2.51441 3.37041 3.55428 3.65684 3.70657 3.85250 3.86509 4.00584 4.14482 4.20421 4.36381 4.39709 4.46382 4.49372 4.50348 4.56625 4.61447 4.72198 4.74796 4.77051 4.88049 4.94630 5.02752 5.10528 5.14264 5.17214 5.19209 5.27434 5.29213 5.38880 5.50813 5.55927 5.57818 5.77689 5.82552 5.84912 6.01961 6.20964 6.34224 6.53471 7.12103 7.17792 7.79467 8.46767 9.29407 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.003256 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.802778 B = 8597.405400 C = 9456.113131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.420 5.420 3 C 0.024 3.976 4 C -0.225 4.225 5 C -0.145 4.145 6 C -0.087 4.087 7 C 0.588 3.412 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.157 3.843 11 H 0.091 0.909 12 C -0.116 4.116 13 C -0.091 4.091 14 C -0.105 4.105 15 H 0.070 0.930 16 C 0.199 3.801 17 N -0.633 5.633 18 C -0.236 4.236 19 H 0.082 0.918 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.976 3.024 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.295 1.295 26 C 0.137 3.863 27 C -0.090 4.090 28 H 0.069 0.931 29 C -0.100 4.100 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.205 0.795 34 H 0.160 0.840 35 H 0.148 0.852 36 H 0.407 0.593 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.001 0.999 42 H 0.007 0.993 43 H 0.244 0.756 44 H 0.030 0.970 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 13.589 -9.846 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.093 5.093 3 C -0.112 4.112 4 C -0.248 4.248 5 C -0.172 4.172 6 C -0.200 4.200 7 C 0.378 3.622 8 O -0.466 6.466 9 N -0.356 5.356 10 C 0.053 3.947 11 H 0.109 0.891 12 C -0.155 4.155 13 C -0.129 4.129 14 C -0.124 4.124 15 H 0.089 0.911 16 C 0.074 3.926 17 N -0.359 5.359 18 C -0.365 4.365 19 H 0.100 0.900 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.189 1.189 24 H -0.221 1.221 25 H -0.222 1.222 26 C 0.013 3.987 27 C -0.109 4.109 28 H 0.087 0.913 29 C -0.138 4.138 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.103 0.897 33 H 0.222 0.778 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.244 0.756 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.019 0.981 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.533 13.312 -9.763 23.364 hybrid contribution 1.770 -0.272 0.813 1.967 sum -14.763 13.040 -8.950 21.635 Atomic orbital electron populations 1.22387 0.75154 1.05892 1.04299 1.44107 1.07612 1.04921 1.52616 1.22662 0.90343 0.92560 1.05633 1.21181 0.97313 0.94695 1.11625 1.21661 0.94473 0.96685 1.04418 1.20119 0.91272 0.87801 1.20839 1.17178 0.85362 0.84223 0.75456 1.90714 1.17242 1.85383 1.53287 1.45910 1.09997 1.06298 1.73364 1.20901 0.98227 0.79506 0.96032 0.89097 1.21857 0.96634 1.02603 0.94359 1.21140 0.94984 0.97996 0.98774 1.21964 0.94960 0.98896 0.96604 0.91119 1.20493 0.86659 0.96465 0.88944 1.45448 1.05230 1.82917 1.02342 1.19517 0.84685 1.39274 0.93057 0.89976 1.25624 1.02287 1.03014 0.95348 1.70207 1.35411 1.57174 0.97348 0.85039 0.79995 0.76714 0.77793 1.18907 1.22054 1.22193 1.21501 0.92138 0.96793 0.88298 1.21912 0.94617 0.98790 0.95577 0.91269 1.21440 0.92561 1.00501 0.99284 0.90397 0.86802 0.89660 0.77799 0.82271 0.83470 0.75575 0.89691 0.92545 0.92306 0.92909 0.98103 0.97472 0.94673 0.95186 0.93649 0.89513 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 10.65 127.77 1.36 2.36 16 2 N -0.42 -8.66 3.16 -534.31 -1.69 -10.34 16 3 C 0.02 0.39 11.38 83.48 0.95 1.34 16 4 C -0.22 -4.28 10.81 22.01 0.24 -4.04 16 5 C -0.15 -3.33 10.36 22.57 0.23 -3.09 16 6 C -0.09 -2.19 6.89 40.35 0.28 -1.91 16 7 C 0.59 16.01 7.72 86.45 0.67 16.68 16 8 O -0.58 -18.18 14.23 -4.33 -0.06 -18.24 16 9 N -0.70 -17.10 4.63 -447.35 -2.07 -19.18 16 10 C 0.16 3.67 2.74 44.81 0.12 3.79 16 11 H 0.09 2.14 7.44 -2.39 -0.02 2.13 16 12 C -0.12 -2.89 5.42 30.72 0.17 -2.73 16 13 C -0.09 -2.76 5.59 30.37 0.17 -2.59 16 14 C -0.11 -3.72 2.29 -10.62 -0.02 -3.74 16 15 H 0.07 2.42 7.93 -2.39 -0.02 2.40 16 16 C 0.20 9.85 5.08 85.82 0.44 10.28 16 17 N -0.63 -32.37 3.45 -693.06 -2.39 -34.76 16 18 C -0.24 -13.30 10.30 84.04 0.87 -12.44 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -4.04 5.49 84.87 0.47 -3.58 16 21 N -0.95 -58.21 10.36 21.65 0.22 -57.98 16 22 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 26 C 0.14 5.30 6.90 85.98 0.59 5.90 16 27 C -0.09 -2.77 2.42 -10.32 -0.02 -2.79 16 28 H 0.07 2.18 6.24 -2.39 -0.01 2.17 16 29 C -0.10 -2.26 5.30 30.12 0.16 -2.10 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.73 6.19 -2.39 -0.01 1.72 16 33 H 0.21 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.15 3.10 7.45 -2.92 -0.02 3.07 16 36 H 0.41 9.46 5.71 -92.71 -0.53 8.93 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.69 7.90 -2.39 -0.02 1.67 16 41 H 0.00 0.04 7.61 -2.39 -0.02 0.02 16 42 H 0.01 0.40 7.30 -2.39 -0.02 0.38 16 43 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 47 H 0.09 1.95 7.98 -2.39 -0.02 1.94 16 Total: -1.00 -73.31 365.16 3.13 -70.18 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.43 Total: 20.64 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 6.66 Total: 1.33 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -5.93 Total: -122.26 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.06 Total: -18.24 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -73.31 3.13 -70.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979501668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.982 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds