Wall clock time and date at job start Tue Mar 31 2020 11:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36451 * 124.85266 * 2 1 4 4 C 1.34481 * 108.85733 * 179.97438 * 3 2 1 5 5 C 1.46683 * 106.33381 * 0.02562 * 4 3 2 6 6 C 1.47266 * 126.94378 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99979 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99984 * 359.97438 * 6 5 4 9 9 C 1.46501 * 120.00220 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.02682 * 36.03742 * 9 8 6 11 11 C 1.52523 * 109.04003 * 277.15778 * 9 8 6 12 12 C 1.51816 * 111.88683 * 185.82662 * 11 9 8 13 13 C 1.51612 * 108.05219 * 56.86451 * 12 11 9 14 14 H 1.08999 * 110.50830 * 55.97093 * 13 12 11 15 15 C 1.53062 * 117.49572 * 184.08565 * 13 12 11 16 16 N 1.48655 * 103.44625 * 156.24861 * 15 13 12 17 17 C 1.36936 * 125.78669 * 155.64596 * 16 15 13 18 18 H 1.08009 * 119.99792 * 341.89898 * 17 16 15 19 19 C 1.38807 * 120.00676 * 161.90155 * 17 16 15 20 20 N 1.31618 * 120.00468 * 156.95195 * 19 17 16 21 21 Si 1.86810 * 119.99619 * 336.95617 * 19 17 16 22 22 H 1.48495 * 109.47011 * 85.40617 * 21 19 17 23 23 H 1.48500 * 109.46869 * 205.40535 * 21 19 17 24 24 H 1.48497 * 109.46950 * 325.40272 * 21 19 17 25 25 C 1.48245 * 108.43445 * 335.61980 * 16 15 13 26 26 C 1.52328 * 105.86108 * 356.81599 * 25 16 15 27 27 H 1.09003 * 110.25117 * 272.17075 * 26 25 16 28 28 C 1.51446 * 117.44892 * 145.31072 * 26 25 16 29 29 C 1.34652 * 124.85051 * 179.69756 * 2 1 3 30 30 H 1.08997 * 109.47167 * 90.01976 * 1 2 3 31 31 H 1.08995 * 109.47118 * 210.02689 * 1 2 3 32 32 H 1.09005 * 109.46797 * 330.02350 * 1 2 3 33 33 H 1.08004 * 125.56923 * 0.02562 * 3 2 1 34 34 H 1.08004 * 126.83150 * 180.02562 * 4 3 2 35 35 H 0.97004 * 119.99975 * 359.97438 * 8 6 5 36 36 H 1.09003 * 109.03588 * 305.96279 * 11 9 8 37 37 H 1.08999 * 109.03838 * 64.81778 * 11 9 8 38 38 H 1.09001 * 108.79304 * 297.52817 * 12 11 9 39 39 H 1.08996 * 110.06750 * 176.93441 * 12 11 9 40 40 H 1.09000 * 110.62297 * 274.74108 * 15 13 12 41 41 H 1.09005 * 110.62658 * 37.59988 * 15 13 12 42 42 H 0.97001 * 119.99789 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.17322 * 237.71692 * 25 16 15 44 44 H 1.08998 * 110.17280 * 115.91105 * 25 16 15 45 45 H 1.09000 * 109.94161 * 61.85411 * 28 26 25 46 46 H 1.08993 * 109.94036 * 300.61671 * 28 26 25 47 47 H 1.08001 * 125.80423 * 359.96293 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7492 0.0006 5 6 3.5462 -0.7176 0.0003 6 6 4.7284 -1.5958 0.0002 7 8 4.5885 -2.8039 0.0005 8 7 5.9653 -1.0606 -0.0002 9 6 7.1414 -1.9342 -0.0008 10 1 6.9296 -2.8148 -0.6072 11 6 7.4343 -2.3754 1.4295 12 6 8.7249 -3.1693 1.5238 13 6 9.8449 -2.3133 0.9656 14 1 9.8939 -1.3590 1.4900 15 6 11.2357 -2.9449 0.8683 16 7 11.9027 -2.1499 -0.1961 17 6 13.2541 -1.9874 -0.3463 18 1 13.9183 -2.1980 0.4790 19 6 13.7704 -1.5521 -1.5590 20 7 14.9495 -0.9686 -1.6009 21 14 12.7916 -1.7942 -3.1316 22 1 11.8423 -0.6652 -3.3026 23 1 13.7197 -1.8404 -4.2900 24 1 12.0351 -3.0695 -3.0523 25 6 10.8570 -1.5632 -1.0679 26 6 9.5301 -2.0962 -0.5429 27 1 9.2940 -3.0504 -1.0138 28 6 8.3300 -1.1753 -0.6157 29 6 2.2345 -1.1050 0.0058 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 1.8829 2.1373 0.0004 34 1 4.3981 1.4018 0.0011 35 1 6.0769 -0.0970 -0.0007 36 1 7.5223 -1.4927 2.0629 37 1 6.6076 -2.9882 1.7889 38 1 8.6217 -4.0788 0.9320 39 1 8.9332 -3.4225 2.5633 40 1 11.7695 -2.8455 1.8134 41 1 11.1620 -3.9932 0.5787 42 1 15.3100 -0.6641 -2.4484 43 1 11.0072 -1.8795 -2.1001 44 1 10.8782 -0.4755 -1.0005 45 1 8.1147 -0.9267 -1.6549 46 1 8.5244 -0.2658 -0.0475 47 1 1.8767 -2.1240 0.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979657349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:00 Heat of formation + Delta-G solvation = 41.936180 kcal Electronic energy + Delta-G solvation = -26462.247849 eV Core-core repulsion = 22839.439369 eV Total energy + Delta-G solvation = -3622.808480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52366 -40.04863 -38.68021 -35.76734 -33.69287 -33.04350 -31.82979 -31.05632 -29.56853 -29.03604 -27.26065 -26.51911 -24.88678 -22.94551 -21.82125 -20.98467 -20.28356 -20.23221 -20.02245 -19.38914 -18.18466 -16.82622 -16.02538 -16.00004 -15.81557 -15.35743 -14.83797 -14.54278 -14.28184 -14.18687 -13.96797 -13.67567 -13.43705 -13.41725 -12.94211 -12.76375 -12.62352 -12.48534 -12.33167 -12.29900 -12.02692 -11.96512 -11.47275 -11.22978 -10.77040 -10.66554 -10.56965 -10.33360 -10.07319 -10.03227 -9.72223 -9.64474 -9.20027 -9.02173 -8.87207 -8.61648 -8.54404 -6.99218 -5.88151 -3.15839 1.57015 2.11505 2.43309 3.32866 3.40254 3.51345 3.53107 3.57132 4.25252 4.55149 4.60798 4.61354 4.64128 4.72801 4.79528 4.86849 4.91957 4.98236 5.12682 5.15367 5.27450 5.44314 5.52444 5.55846 5.58743 5.63927 5.67769 5.77093 5.92059 6.01164 6.09360 6.15461 6.20370 6.25835 6.30481 6.38116 6.41330 6.49806 6.55361 6.60620 6.70224 6.73742 6.85399 6.91575 6.97053 7.61572 7.73810 8.34141 8.37417 8.88449 9.75638 10.26123 11.28681 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.002605 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.743446 B =10747.708490 C =11307.803722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.449 5.449 3 C -0.019 4.019 4 C -0.169 4.169 5 C -0.233 4.233 6 C 0.591 3.409 7 O -0.555 6.555 8 N -0.721 5.721 9 C 0.150 3.850 10 H 0.084 0.916 11 C -0.124 4.124 12 C -0.100 4.100 13 C -0.105 4.105 14 H 0.078 0.922 15 C 0.141 3.859 16 N -0.614 5.614 17 C -0.237 4.237 18 H 0.092 0.908 19 C 0.018 3.982 20 N -0.910 5.910 21 Si 0.890 3.110 22 H -0.287 1.287 23 H -0.306 1.306 24 H -0.280 1.280 25 C 0.129 3.871 26 C -0.103 4.103 27 H 0.074 0.926 28 C -0.109 4.109 29 C 0.073 3.927 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.399 0.601 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.026 0.974 42 H 0.262 0.738 43 H 0.029 0.971 44 H 0.039 0.961 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.747 4.082 5.016 31.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.125 5.125 3 C -0.145 4.145 4 C -0.193 4.193 5 C -0.243 4.243 6 C 0.379 3.621 7 O -0.435 6.435 8 N -0.371 5.371 9 C 0.046 3.954 10 H 0.102 0.898 11 C -0.162 4.162 12 C -0.139 4.139 13 C -0.124 4.124 14 H 0.096 0.904 15 C 0.016 3.984 16 N -0.341 5.341 17 C -0.364 4.364 18 H 0.110 0.890 19 C -0.180 4.180 20 N -0.555 5.555 21 Si 0.722 3.278 22 H -0.215 1.215 23 H -0.234 1.234 24 H -0.207 1.207 25 C 0.005 3.995 26 C -0.123 4.123 27 H 0.092 0.908 28 C -0.147 4.147 29 C -0.063 4.063 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.233 0.767 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -30.968 3.335 4.909 31.532 hybrid contribution -0.464 0.460 -1.095 1.275 sum -31.432 3.795 3.814 31.889 Atomic orbital electron populations 1.22126 0.76869 1.04692 1.03607 1.43631 1.06801 1.05960 1.56079 1.21753 0.90600 0.91284 1.10871 1.22069 0.96255 0.93251 1.07687 1.20403 0.92636 0.93367 1.17898 1.17373 0.82412 0.87000 0.75268 1.90764 1.86623 1.14730 1.51369 1.45919 1.05322 1.10327 1.75524 1.21054 0.83737 0.93646 0.96945 0.89760 1.21528 0.98035 1.00421 0.96240 1.20900 0.93363 0.98413 1.01178 1.22106 0.94964 0.99924 0.95396 0.90376 1.21346 0.90519 0.93749 0.92754 1.45405 1.01751 1.55844 1.31137 1.18679 0.79632 1.40591 0.97493 0.89020 1.24951 0.95889 0.99723 0.97432 1.69852 1.19338 1.40439 1.25834 0.86851 0.78140 0.78540 0.84220 1.21474 1.23449 1.20693 1.21306 0.87127 0.96967 0.94078 1.21733 0.94001 0.99259 0.97270 0.90797 1.21552 0.93540 0.98648 1.00985 1.21795 0.89859 0.91749 1.02861 0.90603 0.89561 0.89576 0.81627 0.83620 0.76697 0.92151 0.91610 0.91786 0.91540 0.93281 0.95568 0.92828 0.95404 0.94296 0.91315 0.90949 0.80867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 11.04 59.85 0.66 0.85 16 2 N -0.45 -3.09 3.09 -124.53 -0.38 -3.47 16 3 C -0.02 -0.13 11.34 -16.82 -0.19 -0.32 16 4 C -0.17 -1.46 10.56 -37.50 -0.40 -1.85 16 5 C -0.23 -2.58 6.29 -103.35 -0.65 -3.23 16 6 C 0.59 7.95 7.73 -12.59 -0.10 7.86 16 7 O -0.56 -9.35 16.51 5.26 0.09 -9.26 16 8 N -0.72 -8.48 5.05 -54.74 -0.28 -8.75 16 9 C 0.15 1.97 2.42 -67.74 -0.16 1.81 16 10 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 11 C -0.12 -1.59 5.29 -27.58 -0.15 -1.73 16 12 C -0.10 -1.35 5.61 -28.03 -0.16 -1.51 16 13 C -0.10 -1.70 2.48 -89.90 -0.22 -1.93 16 14 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 15 C 0.14 2.84 6.93 -2.82 -0.02 2.82 16 16 N -0.61 -15.27 3.26 -170.42 -0.56 -15.82 16 17 C -0.24 -6.89 10.59 -15.06 -0.16 -7.05 16 18 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 19 C 0.02 0.54 5.44 -17.43 -0.09 0.45 16 20 N -0.91 -28.66 13.97 55.49 0.78 -27.89 16 21 Si 0.89 23.53 24.37 -169.99 -4.14 19.39 16 22 H -0.29 -7.31 6.86 56.52 0.39 -6.92 16 23 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 24 H -0.28 -7.35 6.87 56.52 0.39 -6.96 16 25 C 0.13 2.88 5.07 -3.42 -0.02 2.87 16 26 C -0.10 -1.77 2.31 -90.35 -0.21 -1.98 16 27 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 28 C -0.11 -1.50 5.15 -27.08 -0.14 -1.64 16 29 C 0.07 0.68 11.12 -16.84 -0.19 0.49 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.15 8.13 -51.93 -0.42 -0.27 16 32 H 0.09 0.10 8.13 -51.93 -0.42 -0.32 16 33 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 34 H 0.15 0.99 7.70 -52.48 -0.40 0.59 16 35 H 0.40 3.76 7.71 -40.82 -0.31 3.44 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.06 0.88 7.99 -51.93 -0.41 0.47 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 43 H 0.03 0.68 3.22 -51.93 -0.17 0.52 16 44 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.93 8.04 -51.93 -0.42 0.52 16 47 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -36.10 368.43 -8.73 -44.83 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.59 Total: -0.48 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.19 Total: -4.10 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.44 Total: -55.93 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.14 Total: 19.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.10 -8.73 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979657349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.766 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds