Wall clock time and date at job start Tue Mar 31 2020 11:14:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36451 * 124.85266 * 2 1
4 4 C 1.34481 * 108.85733 * 179.97438 * 3 2 1
5 5 C 1.46683 * 106.33381 * 0.02562 * 4 3 2
6 6 C 1.47266 * 126.94378 * 179.97438 * 5 4 3
7 7 O 1.21623 * 119.99979 * 179.97438 * 6 5 4
8 8 N 1.34773 * 119.99984 * 359.97438 * 6 5 4
9 9 C 1.46501 * 120.00220 * 180.02562 * 8 6 5
10 10 H 1.08998 * 109.02682 * 36.03742 * 9 8 6
11 11 C 1.52523 * 109.04003 * 277.15778 * 9 8 6
12 12 C 1.51816 * 111.88683 * 185.82662 * 11 9 8
13 13 C 1.51612 * 108.05219 * 56.86451 * 12 11 9
14 14 H 1.08999 * 110.50830 * 55.97093 * 13 12 11
15 15 C 1.53062 * 117.49572 * 184.08565 * 13 12 11
16 16 N 1.48655 * 103.44625 * 156.24861 * 15 13 12
17 17 C 1.36936 * 125.78669 * 155.64596 * 16 15 13
18 18 H 1.08009 * 119.99792 * 341.89898 * 17 16 15
19 19 C 1.38807 * 120.00676 * 161.90155 * 17 16 15
20 20 N 1.31618 * 120.00468 * 156.95195 * 19 17 16
21 21 Si 1.86810 * 119.99619 * 336.95617 * 19 17 16
22 22 H 1.48495 * 109.47011 * 85.40617 * 21 19 17
23 23 H 1.48500 * 109.46869 * 205.40535 * 21 19 17
24 24 H 1.48497 * 109.46950 * 325.40272 * 21 19 17
25 25 C 1.48245 * 108.43445 * 335.61980 * 16 15 13
26 26 C 1.52328 * 105.86108 * 356.81599 * 25 16 15
27 27 H 1.09003 * 110.25117 * 272.17075 * 26 25 16
28 28 C 1.51446 * 117.44892 * 145.31072 * 26 25 16
29 29 C 1.34652 * 124.85051 * 179.69756 * 2 1 3
30 30 H 1.08997 * 109.47167 * 90.01976 * 1 2 3
31 31 H 1.08995 * 109.47118 * 210.02689 * 1 2 3
32 32 H 1.09005 * 109.46797 * 330.02350 * 1 2 3
33 33 H 1.08004 * 125.56923 * 0.02562 * 3 2 1
34 34 H 1.08004 * 126.83150 * 180.02562 * 4 3 2
35 35 H 0.97004 * 119.99975 * 359.97438 * 8 6 5
36 36 H 1.09003 * 109.03588 * 305.96279 * 11 9 8
37 37 H 1.08999 * 109.03838 * 64.81778 * 11 9 8
38 38 H 1.09001 * 108.79304 * 297.52817 * 12 11 9
39 39 H 1.08996 * 110.06750 * 176.93441 * 12 11 9
40 40 H 1.09000 * 110.62297 * 274.74108 * 15 13 12
41 41 H 1.09005 * 110.62658 * 37.59988 * 15 13 12
42 42 H 0.97001 * 119.99789 * 180.02562 * 20 19 17
43 43 H 1.08997 * 110.17322 * 237.71692 * 25 16 15
44 44 H 1.08998 * 110.17280 * 115.91105 * 25 16 15
45 45 H 1.09000 * 109.94161 * 61.85411 * 28 26 25
46 46 H 1.08993 * 109.94036 * 300.61671 * 28 26 25
47 47 H 1.08001 * 125.80423 * 359.96293 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2448 1.1197 0.0000
4 6 3.5375 0.7492 0.0006
5 6 3.5462 -0.7176 0.0003
6 6 4.7284 -1.5958 0.0002
7 8 4.5885 -2.8039 0.0005
8 7 5.9653 -1.0606 -0.0002
9 6 7.1414 -1.9342 -0.0008
10 1 6.9296 -2.8148 -0.6072
11 6 7.4343 -2.3754 1.4295
12 6 8.7249 -3.1693 1.5238
13 6 9.8449 -2.3133 0.9656
14 1 9.8939 -1.3590 1.4900
15 6 11.2357 -2.9449 0.8683
16 7 11.9027 -2.1499 -0.1961
17 6 13.2541 -1.9874 -0.3463
18 1 13.9183 -2.1980 0.4790
19 6 13.7704 -1.5521 -1.5590
20 7 14.9495 -0.9686 -1.6009
21 14 12.7916 -1.7942 -3.1316
22 1 11.8423 -0.6652 -3.3026
23 1 13.7197 -1.8404 -4.2900
24 1 12.0351 -3.0695 -3.0523
25 6 10.8570 -1.5632 -1.0679
26 6 9.5301 -2.0962 -0.5429
27 1 9.2940 -3.0504 -1.0138
28 6 8.3300 -1.1753 -0.6157
29 6 2.2345 -1.1050 0.0058
30 1 -0.3633 -0.0004 -1.0276
31 1 -0.3633 -0.8897 0.5142
32 1 -0.3633 0.8902 0.5135
33 1 1.8829 2.1373 0.0004
34 1 4.3981 1.4018 0.0011
35 1 6.0769 -0.0970 -0.0007
36 1 7.5223 -1.4927 2.0629
37 1 6.6076 -2.9882 1.7889
38 1 8.6217 -4.0788 0.9320
39 1 8.9332 -3.4225 2.5633
40 1 11.7695 -2.8455 1.8134
41 1 11.1620 -3.9932 0.5787
42 1 15.3100 -0.6641 -2.4484
43 1 11.0072 -1.8795 -2.1001
44 1 10.8782 -0.4755 -1.0005
45 1 8.1147 -0.9267 -1.6549
46 1 8.5244 -0.2658 -0.0475
47 1 1.8767 -2.1240 0.0118
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000979657349.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:00
Heat of formation + Delta-G solvation = 41.936180 kcal
Electronic energy + Delta-G solvation = -26462.247849 eV
Core-core repulsion = 22839.439369 eV
Total energy + Delta-G solvation = -3622.808480 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.52366 -40.04863 -38.68021 -35.76734 -33.69287 -33.04350 -31.82979 -31.05632
-29.56853 -29.03604 -27.26065 -26.51911 -24.88678 -22.94551 -21.82125 -20.98467
-20.28356 -20.23221 -20.02245 -19.38914 -18.18466 -16.82622 -16.02538 -16.00004
-15.81557 -15.35743 -14.83797 -14.54278 -14.28184 -14.18687 -13.96797 -13.67567
-13.43705 -13.41725 -12.94211 -12.76375 -12.62352 -12.48534 -12.33167 -12.29900
-12.02692 -11.96512 -11.47275 -11.22978 -10.77040 -10.66554 -10.56965 -10.33360
-10.07319 -10.03227 -9.72223 -9.64474 -9.20027 -9.02173 -8.87207 -8.61648
-8.54404 -6.99218 -5.88151 -3.15839 1.57015 2.11505 2.43309 3.32866
3.40254 3.51345 3.53107 3.57132 4.25252 4.55149 4.60798 4.61354
4.64128 4.72801 4.79528 4.86849 4.91957 4.98236 5.12682 5.15367
5.27450 5.44314 5.52444 5.55846 5.58743 5.63927 5.67769 5.77093
5.92059 6.01164 6.09360 6.15461 6.20370 6.25835 6.30481 6.38116
6.41330 6.49806 6.55361 6.60620 6.70224 6.73742 6.85399 6.91575
6.97053 7.61572 7.73810 8.34141 8.37417 8.88449 9.75638 10.26123
11.28681
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.025524 B = 0.002605 C = 0.002476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1096.743446 B =10747.708490 C =11307.803722
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.449 5.449
3 C -0.019 4.019
4 C -0.169 4.169
5 C -0.233 4.233
6 C 0.591 3.409
7 O -0.555 6.555
8 N -0.721 5.721
9 C 0.150 3.850
10 H 0.084 0.916
11 C -0.124 4.124
12 C -0.100 4.100
13 C -0.105 4.105
14 H 0.078 0.922
15 C 0.141 3.859
16 N -0.614 5.614
17 C -0.237 4.237
18 H 0.092 0.908
19 C 0.018 3.982
20 N -0.910 5.910
21 Si 0.890 3.110
22 H -0.287 1.287
23 H -0.306 1.306
24 H -0.280 1.280
25 C 0.129 3.871
26 C -0.103 4.103
27 H 0.074 0.926
28 C -0.109 4.109
29 C 0.073 3.927
30 H 0.075 0.925
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.166 0.834
34 H 0.146 0.854
35 H 0.399 0.601
36 H 0.060 0.940
37 H 0.065 0.935
38 H 0.063 0.937
39 H 0.066 0.934
40 H 0.049 0.951
41 H 0.026 0.974
42 H 0.262 0.738
43 H 0.029 0.971
44 H 0.039 0.961
45 H 0.068 0.932
46 H 0.072 0.928
47 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.747 4.082 5.016 31.420
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.125 5.125
3 C -0.145 4.145
4 C -0.193 4.193
5 C -0.243 4.243
6 C 0.379 3.621
7 O -0.435 6.435
8 N -0.371 5.371
9 C 0.046 3.954
10 H 0.102 0.898
11 C -0.162 4.162
12 C -0.139 4.139
13 C -0.124 4.124
14 H 0.096 0.904
15 C 0.016 3.984
16 N -0.341 5.341
17 C -0.364 4.364
18 H 0.110 0.890
19 C -0.180 4.180
20 N -0.555 5.555
21 Si 0.722 3.278
22 H -0.215 1.215
23 H -0.234 1.234
24 H -0.207 1.207
25 C 0.005 3.995
26 C -0.123 4.123
27 H 0.092 0.908
28 C -0.147 4.147
29 C -0.063 4.063
30 H 0.094 0.906
31 H 0.104 0.896
32 H 0.104 0.896
33 H 0.184 0.816
34 H 0.164 0.836
35 H 0.233 0.767
36 H 0.078 0.922
37 H 0.084 0.916
38 H 0.082 0.918
39 H 0.085 0.915
40 H 0.067 0.933
41 H 0.044 0.956
42 H 0.072 0.928
43 H 0.046 0.954
44 H 0.057 0.943
45 H 0.087 0.913
46 H 0.091 0.909
47 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -30.968 3.335 4.909 31.532
hybrid contribution -0.464 0.460 -1.095 1.275
sum -31.432 3.795 3.814 31.889
Atomic orbital electron populations
1.22126 0.76869 1.04692 1.03607 1.43631 1.06801 1.05960 1.56079
1.21753 0.90600 0.91284 1.10871 1.22069 0.96255 0.93251 1.07687
1.20403 0.92636 0.93367 1.17898 1.17373 0.82412 0.87000 0.75268
1.90764 1.86623 1.14730 1.51369 1.45919 1.05322 1.10327 1.75524
1.21054 0.83737 0.93646 0.96945 0.89760 1.21528 0.98035 1.00421
0.96240 1.20900 0.93363 0.98413 1.01178 1.22106 0.94964 0.99924
0.95396 0.90376 1.21346 0.90519 0.93749 0.92754 1.45405 1.01751
1.55844 1.31137 1.18679 0.79632 1.40591 0.97493 0.89020 1.24951
0.95889 0.99723 0.97432 1.69852 1.19338 1.40439 1.25834 0.86851
0.78140 0.78540 0.84220 1.21474 1.23449 1.20693 1.21306 0.87127
0.96967 0.94078 1.21733 0.94001 0.99259 0.97270 0.90797 1.21552
0.93540 0.98648 1.00985 1.21795 0.89859 0.91749 1.02861 0.90603
0.89561 0.89576 0.81627 0.83620 0.76697 0.92151 0.91610 0.91786
0.91540 0.93281 0.95568 0.92828 0.95404 0.94296 0.91315 0.90949
0.80867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.19 11.04 59.85 0.66 0.85 16
2 N -0.45 -3.09 3.09 -124.53 -0.38 -3.47 16
3 C -0.02 -0.13 11.34 -16.82 -0.19 -0.32 16
4 C -0.17 -1.46 10.56 -37.50 -0.40 -1.85 16
5 C -0.23 -2.58 6.29 -103.35 -0.65 -3.23 16
6 C 0.59 7.95 7.73 -12.59 -0.10 7.86 16
7 O -0.56 -9.35 16.51 5.26 0.09 -9.26 16
8 N -0.72 -8.48 5.05 -54.74 -0.28 -8.75 16
9 C 0.15 1.97 2.42 -67.74 -0.16 1.81 16
10 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16
11 C -0.12 -1.59 5.29 -27.58 -0.15 -1.73 16
12 C -0.10 -1.35 5.61 -28.03 -0.16 -1.51 16
13 C -0.10 -1.70 2.48 -89.90 -0.22 -1.93 16
14 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16
15 C 0.14 2.84 6.93 -2.82 -0.02 2.82 16
16 N -0.61 -15.27 3.26 -170.42 -0.56 -15.82 16
17 C -0.24 -6.89 10.59 -15.06 -0.16 -7.05 16
18 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16
19 C 0.02 0.54 5.44 -17.43 -0.09 0.45 16
20 N -0.91 -28.66 13.97 55.49 0.78 -27.89 16
21 Si 0.89 23.53 24.37 -169.99 -4.14 19.39 16
22 H -0.29 -7.31 6.86 56.52 0.39 -6.92 16
23 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16
24 H -0.28 -7.35 6.87 56.52 0.39 -6.96 16
25 C 0.13 2.88 5.07 -3.42 -0.02 2.87 16
26 C -0.10 -1.77 2.31 -90.35 -0.21 -1.98 16
27 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16
28 C -0.11 -1.50 5.15 -27.08 -0.14 -1.64 16
29 C 0.07 0.68 11.12 -16.84 -0.19 0.49 16
30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16
31 H 0.09 0.15 8.13 -51.93 -0.42 -0.27 16
32 H 0.09 0.10 8.13 -51.93 -0.42 -0.32 16
33 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16
34 H 0.15 0.99 7.70 -52.48 -0.40 0.59 16
35 H 0.40 3.76 7.71 -40.82 -0.31 3.44 16
36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16
38 H 0.06 0.88 7.99 -51.93 -0.41 0.47 16
39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16
41 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16
42 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16
43 H 0.03 0.68 3.22 -51.93 -0.17 0.52 16
44 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16
45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
46 H 0.07 0.93 8.04 -51.93 -0.42 0.52 16
47 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16
LS Contribution 368.43 15.07 5.55 5.55
Total: -1.00 -36.10 368.43 -8.73 -44.83
By element:
Atomic # 1 Polarization: 7.11 SS G_CDS: -7.59 Total: -0.48 kcal
Atomic # 6 Polarization: -1.91 SS G_CDS: -2.19 Total: -4.10 kcal
Atomic # 7 Polarization: -55.49 SS G_CDS: -0.44 Total: -55.93 kcal
Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal
Atomic # 14 Polarization: 23.53 SS G_CDS: -4.14 Total: 19.39 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -36.10 -8.73 -44.83 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000979657349.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.766 kcal
(2) G-P(sol) polarization free energy of solvation -36.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.664 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds