Wall clock time and date at job start Tue Mar 31 2020 11:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36451 * 124.85266 * 2 1 4 4 C 1.34481 * 108.85733 * 179.97438 * 3 2 1 5 5 C 1.46683 * 106.33381 * 0.02562 * 4 3 2 6 6 C 1.47266 * 126.94378 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99979 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99984 * 359.97438 * 6 5 4 9 9 C 1.46501 * 120.00220 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.02682 * 36.03742 * 9 8 6 11 11 C 1.52523 * 109.04003 * 277.15778 * 9 8 6 12 12 C 1.51816 * 111.88683 * 185.82662 * 11 9 8 13 13 C 1.51612 * 108.05219 * 56.86451 * 12 11 9 14 14 H 1.08999 * 110.50830 * 55.97093 * 13 12 11 15 15 C 1.53062 * 117.49572 * 184.08565 * 13 12 11 16 16 N 1.48655 * 103.44625 * 156.24861 * 15 13 12 17 17 C 1.36936 * 125.78669 * 155.64596 * 16 15 13 18 18 H 1.08009 * 119.99792 * 341.89898 * 17 16 15 19 19 C 1.38807 * 120.00676 * 161.90155 * 17 16 15 20 20 N 1.31618 * 120.00468 * 156.95195 * 19 17 16 21 21 Si 1.86810 * 119.99619 * 336.95617 * 19 17 16 22 22 H 1.48495 * 109.47011 * 85.40617 * 21 19 17 23 23 H 1.48500 * 109.46869 * 205.40535 * 21 19 17 24 24 H 1.48497 * 109.46950 * 325.40272 * 21 19 17 25 25 C 1.48245 * 108.43445 * 335.61980 * 16 15 13 26 26 C 1.52328 * 105.86108 * 356.81599 * 25 16 15 27 27 H 1.09003 * 110.25117 * 272.17075 * 26 25 16 28 28 C 1.51446 * 117.44892 * 145.31072 * 26 25 16 29 29 C 1.34652 * 124.85051 * 179.69756 * 2 1 3 30 30 H 1.08997 * 109.47167 * 90.01976 * 1 2 3 31 31 H 1.08995 * 109.47118 * 210.02689 * 1 2 3 32 32 H 1.09005 * 109.46797 * 330.02350 * 1 2 3 33 33 H 1.08004 * 125.56923 * 0.02562 * 3 2 1 34 34 H 1.08004 * 126.83150 * 180.02562 * 4 3 2 35 35 H 0.97004 * 119.99975 * 359.97438 * 8 6 5 36 36 H 1.09003 * 109.03588 * 305.96279 * 11 9 8 37 37 H 1.08999 * 109.03838 * 64.81778 * 11 9 8 38 38 H 1.09001 * 108.79304 * 297.52817 * 12 11 9 39 39 H 1.08996 * 110.06750 * 176.93441 * 12 11 9 40 40 H 1.09000 * 110.62297 * 274.74108 * 15 13 12 41 41 H 1.09005 * 110.62658 * 37.59988 * 15 13 12 42 42 H 0.97001 * 119.99789 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.17322 * 237.71692 * 25 16 15 44 44 H 1.08998 * 110.17280 * 115.91105 * 25 16 15 45 45 H 1.09000 * 109.94161 * 61.85411 * 28 26 25 46 46 H 1.08993 * 109.94036 * 300.61671 * 28 26 25 47 47 H 1.08001 * 125.80423 * 359.96293 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7492 0.0006 5 6 3.5462 -0.7176 0.0003 6 6 4.7284 -1.5958 0.0002 7 8 4.5885 -2.8039 0.0005 8 7 5.9653 -1.0606 -0.0002 9 6 7.1414 -1.9342 -0.0008 10 1 6.9296 -2.8148 -0.6072 11 6 7.4343 -2.3754 1.4295 12 6 8.7249 -3.1693 1.5238 13 6 9.8449 -2.3133 0.9656 14 1 9.8939 -1.3590 1.4900 15 6 11.2357 -2.9449 0.8683 16 7 11.9027 -2.1499 -0.1961 17 6 13.2541 -1.9874 -0.3463 18 1 13.9183 -2.1980 0.4790 19 6 13.7704 -1.5521 -1.5590 20 7 14.9495 -0.9686 -1.6009 21 14 12.7916 -1.7942 -3.1316 22 1 11.8423 -0.6652 -3.3026 23 1 13.7197 -1.8404 -4.2900 24 1 12.0351 -3.0695 -3.0523 25 6 10.8570 -1.5632 -1.0679 26 6 9.5301 -2.0962 -0.5429 27 1 9.2940 -3.0504 -1.0138 28 6 8.3300 -1.1753 -0.6157 29 6 2.2345 -1.1050 0.0058 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 1.8829 2.1373 0.0004 34 1 4.3981 1.4018 0.0011 35 1 6.0769 -0.0970 -0.0007 36 1 7.5223 -1.4927 2.0629 37 1 6.6076 -2.9882 1.7889 38 1 8.6217 -4.0788 0.9320 39 1 8.9332 -3.4225 2.5633 40 1 11.7695 -2.8455 1.8134 41 1 11.1620 -3.9932 0.5787 42 1 15.3100 -0.6641 -2.4484 43 1 11.0072 -1.8795 -2.1001 44 1 10.8782 -0.4755 -1.0005 45 1 8.1147 -0.9267 -1.6549 46 1 8.5244 -0.2658 -0.0475 47 1 1.8767 -2.1240 0.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979657349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:59 Heat of formation + Delta-G solvation = 17.987088 kcal Electronic energy + Delta-G solvation = -26463.286360 eV Core-core repulsion = 22839.439369 eV Total energy + Delta-G solvation = -3623.846990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.12594 -41.25453 -39.86217 -37.19842 -35.06034 -33.92718 -33.42365 -32.40341 -30.74740 -30.01493 -28.42468 -27.44559 -26.48706 -23.90802 -23.28277 -22.06415 -21.81468 -21.20205 -20.91201 -20.40096 -19.02755 -18.75188 -17.50747 -16.98044 -16.64446 -16.33191 -16.00013 -15.81525 -15.47477 -15.35997 -15.28467 -15.05371 -14.50448 -14.31179 -14.10338 -13.89488 -13.76495 -13.50599 -13.32881 -13.28295 -13.14916 -13.04014 -12.93749 -12.82457 -12.63189 -12.21113 -12.00815 -11.76583 -11.69953 -11.42465 -11.32498 -10.88045 -10.86290 -10.69242 -10.02819 -9.48811 -9.26317 -9.07629 -8.18482 -5.42345 0.80171 1.27782 1.36564 1.46704 1.55526 1.93420 2.40065 2.44320 2.62918 3.00674 3.28914 3.47095 3.62305 3.83318 3.99975 4.02617 4.04081 4.10432 4.25694 4.31923 4.40781 4.47124 4.47995 4.50497 4.54200 4.59546 4.61997 4.64539 4.75772 4.78766 4.90267 4.98083 5.02829 5.04037 5.08616 5.17356 5.21516 5.25408 5.34078 5.39282 5.56614 5.61030 5.66723 5.80216 6.09714 6.10019 6.37131 6.72539 6.73354 7.39499 7.52565 8.11599 9.02048 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.002605 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.743446 B =10747.708490 C =11307.803722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.012 4.012 4 C -0.184 4.184 5 C -0.267 4.267 6 C 0.587 3.413 7 O -0.599 6.599 8 N -0.711 5.711 9 C 0.157 3.843 10 H 0.065 0.935 11 C -0.115 4.115 12 C -0.091 4.091 13 C -0.088 4.088 14 H 0.083 0.917 15 C 0.134 3.866 16 N -0.634 5.634 17 C -0.230 4.230 18 H 0.062 0.938 19 C -0.039 4.039 20 N -0.955 5.955 21 Si 0.953 3.047 22 H -0.271 1.271 23 H -0.310 1.310 24 H -0.279 1.279 25 C 0.123 3.877 26 C -0.096 4.096 27 H 0.073 0.927 28 C -0.099 4.099 29 C 0.065 3.935 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.200 0.800 34 H 0.160 0.840 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.013 0.987 44 H 0.034 0.966 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.390 5.330 5.278 35.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.119 5.119 3 C -0.139 4.139 4 C -0.207 4.207 5 C -0.277 4.277 6 C 0.378 3.622 7 O -0.482 6.482 8 N -0.361 5.361 9 C 0.052 3.948 10 H 0.083 0.917 11 C -0.154 4.154 12 C -0.130 4.130 13 C -0.107 4.107 14 H 0.101 0.899 15 C 0.010 3.990 16 N -0.361 5.361 17 C -0.359 4.359 18 H 0.080 0.920 19 C -0.234 4.234 20 N -0.602 5.602 21 Si 0.784 3.216 22 H -0.198 1.198 23 H -0.239 1.239 24 H -0.205 1.205 25 C -0.001 4.001 26 C -0.115 4.115 27 H 0.091 0.909 28 C -0.137 4.137 29 C -0.073 4.073 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.216 0.784 34 H 0.178 0.822 35 H 0.248 0.752 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.031 0.969 44 H 0.052 0.948 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -34.669 4.611 5.188 35.357 hybrid contribution 0.630 0.076 -1.083 1.255 sum -34.039 4.687 4.104 34.604 Atomic orbital electron populations 1.22442 0.74365 1.06307 1.04829 1.43935 1.08340 1.05215 1.54368 1.22309 0.90156 0.92555 1.08841 1.22310 0.97774 0.92133 1.08515 1.20408 0.92339 0.94482 1.20477 1.17781 0.83326 0.86759 0.74372 1.90729 1.87236 1.16600 1.53616 1.45763 1.04535 1.10846 1.74938 1.20851 0.83936 0.93139 0.96825 0.91682 1.21436 0.97187 1.00688 0.96096 1.20846 0.92323 0.97821 1.02000 1.21983 0.93405 1.00250 0.95098 0.89890 1.21548 0.92422 0.93707 0.91280 1.45578 1.00935 1.56928 1.32660 1.18648 0.81659 1.39037 0.96574 0.92034 1.25569 0.97182 1.00276 1.00359 1.69967 1.21387 1.42446 1.26432 0.85824 0.76809 0.78858 0.80095 1.19767 1.23908 1.20537 1.21400 0.88954 0.96660 0.93046 1.21648 0.92792 0.99745 0.97350 0.90898 1.21466 0.91949 0.98384 1.01898 1.21925 0.89951 0.92711 1.02669 0.89531 0.88630 0.87426 0.78354 0.82248 0.75166 0.90839 0.92221 0.91974 0.89806 0.93298 0.95168 0.92896 0.96936 0.94819 0.90642 0.89458 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.14 11.04 127.77 1.41 1.55 16 2 N -0.44 -4.95 3.09 -547.89 -1.69 -6.64 16 3 C -0.01 -0.13 11.34 83.11 0.94 0.82 16 4 C -0.18 -2.75 10.56 23.62 0.25 -2.50 16 5 C -0.27 -5.60 6.29 -19.04 -0.12 -5.72 16 6 C 0.59 15.39 7.73 86.62 0.67 16.06 16 7 O -0.60 -20.25 16.51 -4.10 -0.07 -20.31 16 8 N -0.71 -15.50 5.05 -445.36 -2.25 -17.75 16 9 C 0.16 3.84 2.42 45.12 0.11 3.94 16 10 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 11 C -0.12 -2.69 5.29 30.05 0.16 -2.53 16 12 C -0.09 -2.24 5.61 29.75 0.17 -2.08 16 13 C -0.09 -2.69 2.48 -10.32 -0.03 -2.72 16 14 H 0.08 2.50 8.03 -2.39 -0.02 2.48 16 15 C 0.13 5.28 6.93 85.98 0.60 5.88 16 16 N -0.63 -31.46 3.26 -693.07 -2.26 -33.72 16 17 C -0.23 -13.71 10.59 84.03 0.89 -12.82 16 18 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 19 C -0.04 -2.41 5.44 84.86 0.46 -1.94 16 20 N -0.96 -61.75 13.97 21.65 0.30 -61.44 16 21 Si 0.95 49.37 24.37 68.60 1.67 51.04 16 22 H -0.27 -13.18 6.86 99.48 0.68 -12.50 16 23 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 24 H -0.28 -14.18 6.87 99.48 0.68 -13.50 16 25 C 0.12 5.35 5.07 85.82 0.44 5.79 16 26 C -0.10 -3.12 2.31 -10.62 -0.02 -3.14 16 27 H 0.07 2.41 7.94 -2.39 -0.02 2.39 16 28 C -0.10 -2.47 5.15 30.37 0.16 -2.31 16 29 C 0.06 1.13 11.12 83.92 0.93 2.06 16 30 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.10 0.07 8.13 -2.39 -0.02 0.05 16 32 H 0.11 -0.17 8.13 -2.38 -0.02 -0.19 16 33 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.16 1.75 7.70 -2.91 -0.02 1.73 16 35 H 0.41 6.79 7.71 -92.71 -0.71 6.07 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.52 8.07 -2.39 -0.02 1.50 16 38 H 0.06 1.58 7.99 -2.39 -0.02 1.56 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 43 H 0.01 0.61 3.22 -2.39 -0.01 0.61 16 44 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.09 1.96 8.04 -2.39 -0.02 1.94 16 47 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -80.46 368.43 2.91 -77.55 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.20 Total: 10.94 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 7.01 Total: 0.34 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -5.90 Total: -119.56 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.07 Total: -20.31 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.67 Total: 51.04 kcal Total: -80.46 2.91 -77.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979657349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.534 kcal (2) G-P(sol) polarization free energy of solvation -80.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds