Wall clock time and date at job start Tue Mar 31 2020 11:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36444 * 124.85369 * 2 1 4 4 C 1.34489 * 108.85642 * 180.02562 * 3 2 1 5 5 C 1.46681 * 106.33265 * 359.97438 * 4 3 2 6 6 C 1.47264 * 126.94088 * 180.02562 * 5 4 3 7 7 O 1.21633 * 119.99975 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99990 * 359.75319 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27781 * 8 6 5 10 10 H 1.09003 * 109.71034 * 34.99578 * 9 8 6 11 11 C 1.53295 * 109.71058 * 274.39757 * 9 8 6 12 12 C 1.52628 * 108.50476 * 176.52745 * 11 9 8 13 13 C 1.52993 * 110.92909 * 62.20602 * 12 11 9 14 14 H 1.09006 * 112.42945 * 73.38901 * 13 12 11 15 15 C 1.55839 * 106.36464 * 198.11297 * 13 12 11 16 16 N 1.47613 * 104.47378 * 77.06170 * 15 13 12 17 17 C 1.36940 * 125.72667 * 204.84572 * 16 15 13 18 18 H 1.07994 * 120.00151 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99781 * 0.02562 * 17 16 15 20 20 N 1.31622 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99634 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47253 * 90.00156 * 21 19 17 23 23 H 1.48502 * 109.46894 * 209.99848 * 21 19 17 24 24 H 1.48497 * 109.47628 * 329.99494 * 21 19 17 25 25 C 1.47429 * 108.54964 * 24.86329 * 16 15 13 26 26 C 1.53379 * 106.51275 * 359.33266 * 25 16 15 27 27 H 1.09002 * 108.95210 * 91.96958 * 26 25 16 28 28 C 1.50892 * 113.03711 * 212.45076 * 26 25 16 29 29 C 1.34658 * 124.84661 * 180.31762 * 2 1 3 30 30 H 1.08993 * 109.47585 * 89.97015 * 1 2 3 31 31 H 1.09000 * 109.46586 * 209.97652 * 1 2 3 32 32 H 1.09004 * 109.46368 * 329.96793 * 1 2 3 33 33 H 1.07998 * 125.57080 * 0.02562 * 3 2 1 34 34 H 1.08000 * 126.83311 * 179.97438 * 4 3 2 35 35 H 0.97000 * 119.99736 * 0.27056 * 8 6 5 36 36 H 1.09004 * 109.63395 * 296.23491 * 11 9 8 37 37 H 1.09000 * 109.63163 * 56.62383 * 11 9 8 38 38 H 1.09003 * 109.18734 * 182.57617 * 12 11 9 39 39 H 1.09001 * 109.18788 * 301.88344 * 12 11 9 40 40 H 1.09001 * 110.43045 * 195.80939 * 15 13 12 41 41 H 1.08997 * 110.43443 * 318.30652 * 15 13 12 42 42 H 0.97000 * 119.99423 * 180.02562 * 20 19 17 43 43 H 1.09001 * 110.04983 * 240.07499 * 25 16 15 44 44 H 1.09000 * 110.04559 * 118.59670 * 25 16 15 45 45 H 1.08999 * 109.09695 * 305.34729 * 28 26 25 46 46 H 1.09001 * 109.02641 * 186.41302 * 28 26 25 47 47 H 1.08001 * 125.80680 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7490 -0.0006 5 6 3.5462 -0.7177 -0.0003 6 6 4.7284 -1.5959 -0.0002 7 8 4.5885 -2.8041 -0.0005 8 7 5.9653 -1.0607 -0.0054 9 6 7.1414 -1.9344 -0.0114 10 1 6.9325 -2.8279 -0.5998 11 6 7.4969 -2.3327 1.4255 12 6 8.6690 -3.3094 1.3815 13 6 9.9065 -2.6508 0.7688 14 1 10.3730 -1.9331 1.4439 15 6 10.8567 -3.8108 0.3447 16 7 10.2663 -4.3339 -0.9030 17 6 10.4289 -5.6017 -1.3945 18 1 9.9526 -5.8869 -2.3208 19 6 11.2058 -6.5202 -0.7019 20 7 11.7867 -6.1724 0.4268 21 14 11.4281 -8.2493 -1.3727 22 1 12.6177 -8.2867 -2.2607 23 1 11.6220 -9.1964 -0.2454 24 1 10.2214 -8.6397 -2.1451 25 6 9.4725 -3.2623 -1.5315 26 6 9.5787 -2.0423 -0.6080 27 1 10.4173 -1.4255 -0.9313 28 6 8.3339 -1.1895 -0.6107 29 6 2.2345 -1.1051 -0.0061 30 1 -0.3634 0.0005 -1.0276 31 1 -0.3632 -0.8902 0.5135 32 1 -0.3632 0.8898 0.5144 33 1 1.8830 2.1372 0.0004 34 1 4.3982 1.4016 -0.0011 35 1 6.0769 -0.0972 -0.0052 36 1 7.7805 -1.4456 1.9920 37 1 6.6372 -2.8088 1.8969 38 1 8.9017 -3.6356 2.3952 39 1 8.3910 -4.1758 0.7814 40 1 11.8618 -3.4313 0.1602 41 1 10.8764 -4.5860 1.1107 42 1 12.3299 -6.8142 0.9105 43 1 8.4316 -3.5725 -1.6224 44 1 9.8790 -3.0235 -2.5143 45 1 8.0977 -0.9064 -1.6365 46 1 8.5197 -0.2875 -0.0276 47 1 1.8767 -2.1241 -0.0122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979657351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:09 Heat of formation + Delta-G solvation = 34.294557 kcal Electronic energy + Delta-G solvation = -26773.270689 eV Core-core repulsion = 23150.130843 eV Total energy + Delta-G solvation = -3623.139845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41232 -39.76436 -38.39693 -35.31038 -33.38792 -32.85728 -31.49772 -30.61226 -29.40771 -28.81948 -26.99816 -25.79791 -24.75103 -22.77727 -22.05484 -21.15603 -20.29232 -19.77774 -19.71452 -18.41176 -17.67120 -16.73699 -16.08418 -15.74085 -15.71579 -14.71035 -14.67910 -14.47225 -14.11317 -13.78106 -13.65549 -13.45776 -13.34441 -13.27673 -12.84856 -12.59838 -12.34034 -12.25373 -12.07166 -11.88069 -11.60714 -11.37762 -10.97833 -10.91195 -10.80289 -10.50069 -10.38516 -9.93809 -9.80277 -9.67995 -9.56972 -9.29430 -9.25352 -8.89352 -8.70345 -8.53895 -8.47527 -6.70170 -5.54553 -2.95230 1.70649 2.21051 2.53420 3.47404 3.52299 3.52967 3.54669 3.68654 4.33777 4.58725 4.63452 4.68840 4.76221 4.94540 5.00389 5.12860 5.19223 5.25176 5.45674 5.57400 5.64249 5.67574 5.72160 5.74403 5.81707 5.88209 6.01406 6.02310 6.16097 6.24213 6.33676 6.48501 6.51671 6.55468 6.59551 6.73542 6.78386 6.79165 6.89974 6.95494 6.99110 7.11252 7.27844 7.60546 7.73669 7.81337 7.97911 8.47923 8.55074 9.33271 9.94066 10.60294 11.49115 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.002713 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.114940 B =10317.787507 C =10921.275609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.450 5.450 3 C -0.020 4.020 4 C -0.169 4.169 5 C -0.229 4.229 6 C 0.587 3.413 7 O -0.549 6.549 8 N -0.721 5.721 9 C 0.146 3.854 10 H 0.094 0.906 11 C -0.122 4.122 12 C -0.101 4.101 13 C -0.114 4.114 14 H 0.071 0.929 15 C 0.156 3.844 16 N -0.602 5.602 17 C -0.217 4.217 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.912 3.088 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.139 3.861 26 C -0.090 4.090 27 H 0.064 0.936 28 C -0.107 4.107 29 C 0.071 3.929 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.395 0.605 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.007 0.993 41 H 0.109 0.891 42 H 0.250 0.750 43 H 0.026 0.974 44 H 0.019 0.981 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.067 18.666 1.444 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.126 5.126 3 C -0.147 4.147 4 C -0.194 4.194 5 C -0.239 4.239 6 C 0.376 3.624 7 O -0.428 6.428 8 N -0.370 5.370 9 C 0.042 3.958 10 H 0.112 0.888 11 C -0.161 4.161 12 C -0.139 4.139 13 C -0.133 4.133 14 H 0.089 0.911 15 C 0.031 3.969 16 N -0.328 5.328 17 C -0.345 4.345 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.743 3.257 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.013 3.987 26 C -0.109 4.109 27 H 0.083 0.917 28 C -0.145 4.145 29 C -0.064 4.064 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.228 0.772 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.025 0.975 41 H 0.127 0.873 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -20.418 17.613 1.475 27.005 hybrid contribution 0.222 -0.230 -0.420 0.528 sum -20.195 17.382 1.055 26.667 Atomic orbital electron populations 1.22114 0.76954 1.04645 1.03541 1.43617 1.06743 1.05958 1.56232 1.21722 0.90618 0.91231 1.11091 1.22044 0.96150 0.93290 1.07887 1.20452 0.92724 0.93321 1.17446 1.17371 0.82403 0.87055 0.75613 1.90803 1.86526 1.14655 1.50823 1.45890 1.05500 1.10027 1.75593 1.21064 0.83378 0.93889 0.97451 0.88796 1.21888 0.98867 0.99544 0.95794 1.21362 0.93185 0.98533 1.00852 1.22590 0.97807 0.98486 0.94434 0.91094 1.22233 0.90976 0.93102 0.90557 1.44591 1.56553 1.08142 1.23491 1.19088 1.24871 0.86060 1.04497 0.90613 1.24755 1.00110 0.98422 0.97542 1.69790 1.37203 1.33667 1.16560 0.86095 0.77778 0.84212 0.77598 1.21806 1.21739 1.20740 1.21237 0.95120 0.88125 0.94204 1.21233 0.95893 0.96271 0.97508 0.91708 1.21192 0.94376 0.98396 1.00541 1.21818 0.89896 0.91751 1.02904 0.90668 0.89568 0.89643 0.81739 0.83736 0.77164 0.92670 0.92249 0.92624 0.90381 0.97516 0.87316 0.93881 0.95649 0.96340 0.91977 0.92027 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.03 59.85 0.66 0.91 16 2 N -0.45 -3.51 3.09 -124.52 -0.38 -3.89 16 3 C -0.02 -0.15 11.34 -16.82 -0.19 -0.35 16 4 C -0.17 -1.58 10.56 -37.50 -0.40 -1.98 16 5 C -0.23 -2.83 6.29 -103.35 -0.65 -3.48 16 6 C 0.59 9.05 7.79 -12.59 -0.10 8.95 16 7 O -0.55 -10.75 16.58 5.25 0.09 -10.66 16 8 N -0.72 -9.67 5.09 -54.86 -0.28 -9.95 16 9 C 0.15 2.29 2.31 -67.86 -0.16 2.13 16 10 H 0.09 1.81 6.20 -51.93 -0.32 1.49 16 11 C -0.12 -1.99 5.52 -26.77 -0.15 -2.14 16 12 C -0.10 -1.93 4.81 -26.93 -0.13 -2.06 16 13 C -0.11 -2.18 3.72 -88.55 -0.33 -2.51 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C 0.16 3.86 5.18 -1.92 -0.01 3.85 16 16 N -0.60 -15.82 2.93 -169.58 -0.50 -16.31 16 17 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 20 N -0.92 -27.51 10.09 55.49 0.56 -26.95 16 21 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.14 3.02 6.24 -3.34 -0.02 3.00 16 26 C -0.09 -1.59 2.69 -90.93 -0.24 -1.84 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 C -0.11 -1.52 4.83 -27.87 -0.13 -1.66 16 29 C 0.07 0.76 11.12 -16.84 -0.19 0.57 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.23 8.13 -51.93 -0.42 -0.19 16 32 H 0.08 0.16 8.13 -51.93 -0.42 -0.26 16 33 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.14 1.04 7.69 -52.49 -0.40 0.64 16 35 H 0.39 4.08 7.73 -40.82 -0.32 3.76 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.78 7.16 -51.93 -0.37 1.41 16 40 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.11 3.02 5.68 -51.93 -0.30 2.72 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.03 0.57 6.49 -51.93 -0.34 0.23 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -35.01 368.77 -9.78 -44.79 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.51 Total: 3.08 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.29 Total: -3.47 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.60 Total: -57.10 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.01 -9.78 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979657351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.080 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds