Wall clock time and date at job start Tue Mar 31 2020 11:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36444 * 124.85369 * 2 1 4 4 C 1.34489 * 108.85642 * 180.02562 * 3 2 1 5 5 C 1.46681 * 106.33265 * 359.97438 * 4 3 2 6 6 C 1.47264 * 126.94088 * 180.02562 * 5 4 3 7 7 O 1.21633 * 119.99975 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99990 * 359.75319 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27781 * 8 6 5 10 10 H 1.09003 * 109.71034 * 34.99578 * 9 8 6 11 11 C 1.53295 * 109.71058 * 274.39757 * 9 8 6 12 12 C 1.52628 * 108.50476 * 176.52745 * 11 9 8 13 13 C 1.52993 * 110.92909 * 62.20602 * 12 11 9 14 14 H 1.09006 * 112.42945 * 73.38901 * 13 12 11 15 15 C 1.55839 * 106.36464 * 198.11297 * 13 12 11 16 16 N 1.47613 * 104.47378 * 77.06170 * 15 13 12 17 17 C 1.36940 * 125.72667 * 204.84572 * 16 15 13 18 18 H 1.07994 * 120.00151 * 180.02562 * 17 16 15 19 19 C 1.38815 * 119.99781 * 0.02562 * 17 16 15 20 20 N 1.31622 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99634 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47253 * 90.00156 * 21 19 17 23 23 H 1.48502 * 109.46894 * 209.99848 * 21 19 17 24 24 H 1.48497 * 109.47628 * 329.99494 * 21 19 17 25 25 C 1.47429 * 108.54964 * 24.86329 * 16 15 13 26 26 C 1.53379 * 106.51275 * 359.33266 * 25 16 15 27 27 H 1.09002 * 108.95210 * 91.96958 * 26 25 16 28 28 C 1.50892 * 113.03711 * 212.45076 * 26 25 16 29 29 C 1.34658 * 124.84661 * 180.31762 * 2 1 3 30 30 H 1.08993 * 109.47585 * 89.97015 * 1 2 3 31 31 H 1.09000 * 109.46586 * 209.97652 * 1 2 3 32 32 H 1.09004 * 109.46368 * 329.96793 * 1 2 3 33 33 H 1.07998 * 125.57080 * 0.02562 * 3 2 1 34 34 H 1.08000 * 126.83311 * 179.97438 * 4 3 2 35 35 H 0.97000 * 119.99736 * 0.27056 * 8 6 5 36 36 H 1.09004 * 109.63395 * 296.23491 * 11 9 8 37 37 H 1.09000 * 109.63163 * 56.62383 * 11 9 8 38 38 H 1.09003 * 109.18734 * 182.57617 * 12 11 9 39 39 H 1.09001 * 109.18788 * 301.88344 * 12 11 9 40 40 H 1.09001 * 110.43045 * 195.80939 * 15 13 12 41 41 H 1.08997 * 110.43443 * 318.30652 * 15 13 12 42 42 H 0.97000 * 119.99423 * 180.02562 * 20 19 17 43 43 H 1.09001 * 110.04983 * 240.07499 * 25 16 15 44 44 H 1.09000 * 110.04559 * 118.59670 * 25 16 15 45 45 H 1.08999 * 109.09695 * 305.34729 * 28 26 25 46 46 H 1.09001 * 109.02641 * 186.41302 * 28 26 25 47 47 H 1.08001 * 125.80680 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7490 -0.0006 5 6 3.5462 -0.7177 -0.0003 6 6 4.7284 -1.5959 -0.0002 7 8 4.5885 -2.8041 -0.0005 8 7 5.9653 -1.0607 -0.0054 9 6 7.1414 -1.9344 -0.0114 10 1 6.9325 -2.8279 -0.5998 11 6 7.4969 -2.3327 1.4255 12 6 8.6690 -3.3094 1.3815 13 6 9.9065 -2.6508 0.7688 14 1 10.3730 -1.9331 1.4439 15 6 10.8567 -3.8108 0.3447 16 7 10.2663 -4.3339 -0.9030 17 6 10.4289 -5.6017 -1.3945 18 1 9.9526 -5.8869 -2.3208 19 6 11.2058 -6.5202 -0.7019 20 7 11.7867 -6.1724 0.4268 21 14 11.4281 -8.2493 -1.3727 22 1 12.6177 -8.2867 -2.2607 23 1 11.6220 -9.1964 -0.2454 24 1 10.2214 -8.6397 -2.1451 25 6 9.4725 -3.2623 -1.5315 26 6 9.5787 -2.0423 -0.6080 27 1 10.4173 -1.4255 -0.9313 28 6 8.3339 -1.1895 -0.6107 29 6 2.2345 -1.1051 -0.0061 30 1 -0.3634 0.0005 -1.0276 31 1 -0.3632 -0.8902 0.5135 32 1 -0.3632 0.8898 0.5144 33 1 1.8830 2.1372 0.0004 34 1 4.3982 1.4016 -0.0011 35 1 6.0769 -0.0972 -0.0052 36 1 7.7805 -1.4456 1.9920 37 1 6.6372 -2.8088 1.8969 38 1 8.9017 -3.6356 2.3952 39 1 8.3910 -4.1758 0.7814 40 1 11.8618 -3.4313 0.1602 41 1 10.8764 -4.5860 1.1107 42 1 12.3299 -6.8142 0.9105 43 1 8.4316 -3.5725 -1.6224 44 1 9.8790 -3.0235 -2.5143 45 1 8.0977 -0.9064 -1.6365 46 1 8.5197 -0.2875 -0.0276 47 1 1.8767 -2.1241 -0.0122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979657351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:08 Heat of formation + Delta-G solvation = 11.964028 kcal Electronic energy + Delta-G solvation = -26774.239013 eV Core-core repulsion = 23150.130843 eV Total energy + Delta-G solvation = -3624.108170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.10756 -41.14836 -39.76306 -36.88603 -34.91632 -33.75866 -33.13205 -32.13052 -30.65543 -29.99741 -27.89951 -27.32040 -26.48896 -23.93038 -23.56674 -22.44344 -21.64202 -20.98588 -20.74217 -19.59703 -18.98305 -18.50723 -17.35397 -16.79549 -16.75405 -16.33074 -15.95261 -15.59944 -15.50411 -15.24336 -15.06705 -14.73704 -14.50754 -13.97826 -13.86746 -13.75189 -13.65017 -13.30857 -13.24805 -13.09440 -13.01794 -12.92499 -12.85800 -12.63700 -12.45112 -12.18390 -12.10188 -11.78427 -11.71772 -11.27151 -11.10087 -10.87082 -10.78404 -10.68054 -9.99066 -9.46400 -9.24860 -8.83279 -7.75541 -5.18688 0.80930 1.43532 1.45956 1.54582 1.58196 1.94824 2.47926 2.50433 2.64688 3.32757 3.72136 3.74131 3.75945 3.99416 4.03536 4.08917 4.13451 4.22337 4.28075 4.33746 4.40711 4.48271 4.57886 4.60829 4.64219 4.69953 4.75088 4.76081 4.82457 4.96040 5.05384 5.08911 5.14754 5.16291 5.27129 5.27522 5.38277 5.46620 5.52827 5.55184 5.66408 5.76820 5.81902 5.88926 6.10746 6.35707 6.39407 6.78389 7.13661 7.45394 7.81207 8.45935 9.25672 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.002713 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.114940 B =10317.787507 C =10921.275609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.010 4.010 4 C -0.180 4.180 5 C -0.264 4.264 6 C 0.581 3.419 7 O -0.606 6.606 8 N -0.704 5.704 9 C 0.152 3.848 10 H 0.048 0.952 11 C -0.110 4.110 12 C -0.093 4.093 13 C -0.096 4.096 14 H 0.106 0.894 15 C 0.156 3.844 16 N -0.623 5.623 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.068 4.068 20 N -0.946 5.946 21 Si 0.977 3.023 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.275 1.275 25 C 0.133 3.867 26 C -0.077 4.077 27 H 0.083 0.917 28 C -0.096 4.096 29 C 0.059 3.941 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.204 0.796 34 H 0.166 0.834 35 H 0.415 0.585 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.028 0.972 40 H -0.015 1.015 41 H 0.073 0.927 42 H 0.246 0.754 43 H 0.014 0.986 44 H 0.020 0.980 45 H 0.078 0.922 46 H 0.104 0.896 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.663 22.523 1.443 31.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.136 4.136 4 C -0.204 4.204 5 C -0.274 4.274 6 C 0.372 3.628 7 O -0.489 6.489 8 N -0.354 5.354 9 C 0.047 3.953 10 H 0.067 0.933 11 C -0.148 4.148 12 C -0.132 4.132 13 C -0.115 4.115 14 H 0.124 0.876 15 C 0.032 3.968 16 N -0.349 5.349 17 C -0.366 4.366 18 H 0.091 0.909 19 C -0.260 4.260 20 N -0.597 5.597 21 Si 0.806 3.194 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.200 1.200 25 C 0.008 3.992 26 C -0.096 4.096 27 H 0.101 0.899 28 C -0.134 4.134 29 C -0.078 4.078 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.221 0.779 34 H 0.184 0.816 35 H 0.252 0.748 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.003 0.997 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.038 0.962 45 H 0.096 0.904 46 H 0.123 0.877 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.041 21.547 1.460 30.858 hybrid contribution 0.615 -1.438 -0.440 1.625 sum -21.426 20.109 1.020 29.402 Atomic orbital electron populations 1.22440 0.74395 1.06268 1.04825 1.43925 1.08317 1.05177 1.54412 1.22359 0.90071 0.92526 1.08674 1.22321 0.97937 0.91636 1.08467 1.20386 0.91996 0.94765 1.20251 1.17940 0.83684 0.86740 0.74463 1.90768 1.87327 1.17243 1.53605 1.45629 1.04260 1.10713 1.74794 1.20784 0.84945 0.93220 0.96378 0.93348 1.21760 0.96693 0.99733 0.96636 1.21213 0.94574 0.97728 0.99668 1.22505 0.96053 0.96987 0.95975 0.87556 1.22046 0.91388 0.94132 0.89279 1.44867 1.57012 1.08497 1.24504 1.19414 1.24838 0.87777 1.04601 0.90929 1.25581 1.00245 1.02142 0.98019 1.70048 1.37627 1.34492 1.17486 0.85091 0.77879 0.79546 0.76925 1.21101 1.21771 1.19987 1.21426 0.93640 0.88930 0.95199 1.21185 0.98586 0.94921 0.94952 0.89916 1.21127 0.91393 0.98533 1.02312 1.21873 0.90164 0.92661 1.03101 0.89511 0.88970 0.87139 0.77940 0.81647 0.74811 0.89174 0.94081 0.92825 0.95285 0.99740 0.90898 0.94398 0.96810 0.96215 0.90350 0.87723 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 11.03 127.77 1.41 1.66 16 2 N -0.44 -5.81 3.09 -547.88 -1.69 -7.50 16 3 C -0.01 -0.11 11.34 83.12 0.94 0.83 16 4 C -0.18 -2.85 10.56 23.62 0.25 -2.60 16 5 C -0.26 -6.32 6.29 -19.04 -0.12 -6.44 16 6 C 0.58 18.15 7.79 86.62 0.67 18.82 16 7 O -0.61 -25.21 16.58 -4.14 -0.07 -25.28 16 8 N -0.70 -17.90 5.09 -445.72 -2.27 -20.17 16 9 C 0.15 4.65 2.31 45.04 0.10 4.75 16 10 H 0.05 1.96 6.20 -2.39 -0.01 1.94 16 11 C -0.11 -3.48 5.52 30.57 0.17 -3.31 16 12 C -0.09 -3.64 4.81 30.47 0.15 -3.50 16 13 C -0.10 -3.61 3.72 -9.46 -0.04 -3.64 16 14 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 15 C 0.16 8.02 5.18 87.15 0.45 8.47 16 16 N -0.62 -34.13 2.93 -690.44 -2.02 -36.15 16 17 C -0.24 -14.24 10.28 84.03 0.86 -13.37 16 18 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 20 N -0.95 -58.80 10.09 21.65 0.22 -58.58 16 21 Si 0.98 48.43 29.55 68.60 2.03 50.46 16 22 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 24 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 25 C 0.13 5.91 6.24 86.33 0.54 6.45 16 26 C -0.08 -2.60 2.69 -10.99 -0.03 -2.63 16 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 28 C -0.10 -2.41 4.83 29.86 0.14 -2.27 16 29 C 0.06 1.23 11.12 83.92 0.93 2.16 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.09 0.30 8.13 -2.39 -0.02 0.28 16 32 H 0.11 -0.05 8.13 -2.39 -0.02 -0.07 16 33 H 0.20 0.70 8.06 -2.91 -0.02 0.67 16 34 H 0.17 1.73 7.69 -2.91 -0.02 1.71 16 35 H 0.41 7.20 7.73 -92.71 -0.72 6.48 16 36 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.03 1.40 7.16 -2.39 -0.02 1.38 16 40 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 41 H 0.07 4.27 5.68 -2.39 -0.01 4.26 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.01 0.65 6.49 -2.39 -0.02 0.63 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 47 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -83.42 368.77 3.35 -80.07 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.25 Total: 15.35 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.91 Total: 1.80 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -5.76 Total: -122.40 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.07 Total: -25.28 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -83.42 3.35 -80.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979657351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.037 kcal (2) G-P(sol) polarization free energy of solvation -83.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds