Wall clock time and date at job start Tue Mar 31 2020 11:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99726 * 2 1 4 4 C 1.39703 * 120.00107 * 179.97438 * 2 1 3 5 5 C 1.39029 * 120.00399 * 0.02562 * 4 2 1 6 6 C 1.38201 * 120.22003 * 179.97438 * 5 4 2 7 7 C 1.38025 * 120.22826 * 359.97438 * 6 5 4 8 8 C 1.39576 * 120.00370 * 359.97438 * 7 6 5 9 9 C 1.47863 * 120.11037 * 179.97438 * 8 7 6 10 10 O 1.21548 * 120.00512 * 172.54817 * 9 8 7 11 11 N 1.34777 * 119.99668 * 352.54209 * 9 8 7 12 12 C 1.47470 * 125.62695 * 185.90010 * 11 9 8 13 13 C 1.54911 * 104.80934 * 204.14214 * 12 11 9 14 14 C 1.55159 * 101.61889 * 323.04195 * 13 12 11 15 15 H 1.08999 * 110.71986 * 276.94152 * 14 13 12 16 16 N 1.46502 * 110.72094 * 153.84702 * 14 13 12 17 17 C 1.46495 * 119.99973 * 300.00294 * 16 14 13 18 18 C 1.36941 * 119.99757 * 120.00162 * 16 14 13 19 19 H 1.07994 * 119.99935 * 314.98199 * 18 16 14 20 20 C 1.38810 * 119.99704 * 134.98622 * 18 16 14 21 21 N 1.31612 * 119.99816 * 182.15369 * 20 18 16 22 22 Si 1.86806 * 119.99986 * 2.15017 * 20 18 16 23 23 H 1.48505 * 109.46811 * 85.65650 * 22 20 18 24 24 H 1.48501 * 109.46876 * 205.65060 * 22 20 18 25 25 H 1.48489 * 109.47374 * 325.65686 * 22 20 18 26 26 C 1.47019 * 125.64924 * 5.98424 * 11 9 8 27 27 C 1.38640 * 120.00682 * 180.23557 * 4 2 1 28 28 H 1.09001 * 109.47465 * 269.99921 * 1 2 3 29 29 H 1.09006 * 109.47040 * 30.00517 * 1 2 3 30 30 H 1.09001 * 109.46762 * 149.99802 * 1 2 3 31 31 H 1.09004 * 109.47193 * 269.99416 * 3 2 1 32 32 H 1.09000 * 109.47189 * 29.99947 * 3 2 1 33 33 H 1.08999 * 109.47163 * 149.99594 * 3 2 1 34 34 H 1.08000 * 119.88838 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.88844 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.00205 * 179.97438 * 7 6 5 37 37 H 1.09000 * 110.35119 * 85.32946 * 12 11 9 38 38 H 1.09001 * 110.40809 * 322.98770 * 12 11 9 39 39 H 1.09006 * 111.00467 * 204.94867 * 13 12 11 40 40 H 1.09002 * 111.00550 * 81.14115 * 13 12 11 41 41 H 1.08998 * 109.47136 * 84.70367 * 17 16 14 42 42 H 1.08999 * 109.47292 * 204.70033 * 17 16 14 43 43 H 1.09005 * 109.47224 * 324.70281 * 17 16 14 44 44 H 0.97005 * 119.99681 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.88596 * 59.48842 * 26 11 9 46 46 H 1.08995 * 109.88473 * 298.31854 * 26 11 9 47 47 H 1.08004 * 120.10910 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2098 0.0005 5 6 1.4685 -2.4139 0.0005 6 6 2.1551 -3.6134 0.0005 7 6 3.5353 -3.6241 0.0000 8 6 4.2426 -2.4208 -0.0011 9 6 5.7212 -2.4295 -0.0011 10 8 6.3351 -1.3895 -0.1385 11 7 6.3882 -3.5906 0.1515 12 6 7.8495 -3.7297 0.2929 13 6 8.1577 -5.1720 -0.1809 14 6 6.9273 -5.9479 0.3590 15 1 7.0692 -6.2154 1.4061 16 7 6.6725 -7.1429 -0.4493 17 6 6.3837 -7.0119 -1.8795 18 6 6.7044 -8.3824 0.1321 19 1 7.5046 -8.6404 0.8099 20 6 5.7082 -9.3070 -0.1498 21 7 5.7154 -10.4828 0.4413 22 14 4.3574 -8.8823 -1.3683 23 1 4.8179 -9.1921 -2.7457 24 1 3.1441 -9.6814 -1.0605 25 1 4.0364 -7.4360 -1.2673 26 6 5.7797 -4.9280 0.2026 27 6 3.5500 -1.2100 0.0055 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3792 1.5834 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 0.3885 -2.4119 0.0005 35 1 1.6097 -4.5456 0.0001 36 1 4.0680 -4.5635 0.0004 37 1 8.1433 -3.6018 1.3348 38 1 8.3632 -3.0050 -0.3387 39 1 9.0801 -5.5417 0.2670 40 1 8.2059 -5.2240 -1.2686 41 1 7.3196 -6.9572 -2.4356 42 1 5.8116 -7.8767 -2.2154 43 1 5.8052 -6.1042 -2.0518 44 1 5.0190 -11.1288 0.2446 45 1 5.2341 -5.1227 -0.7208 46 1 5.1047 -4.9958 1.0557 47 1 4.0919 -0.2757 0.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980265532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:31 Heat of formation + Delta-G solvation = 71.850381 kcal Electronic energy + Delta-G solvation = -27148.596420 eV Core-core repulsion = 23527.085117 eV Total energy + Delta-G solvation = -3621.511303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47001 -39.10899 -37.55275 -36.19538 -34.95146 -31.99119 -31.49765 -30.84257 -29.64483 -28.44460 -28.22402 -26.35978 -24.99617 -24.48637 -23.08240 -21.73184 -21.20523 -19.67794 -19.50319 -17.54942 -17.11103 -16.58069 -16.18384 -15.89576 -15.41658 -15.29903 -15.22627 -14.91858 -14.20368 -13.94876 -13.72360 -13.59262 -13.45694 -13.00454 -12.90198 -12.82893 -12.57529 -12.51210 -12.36626 -12.27689 -12.18767 -11.88948 -11.73251 -11.46600 -11.10679 -10.91416 -10.68666 -10.45486 -10.15477 -9.97130 -9.90885 -9.71764 -9.47315 -8.96788 -8.65527 -8.38011 -7.42849 -6.85800 -6.04408 -3.66916 0.96398 1.55504 2.86445 3.02245 3.19857 3.23954 3.33845 3.40784 3.98312 4.39162 4.50013 4.73451 4.78090 4.89098 4.97885 4.98636 5.05938 5.12097 5.20756 5.30147 5.30439 5.38447 5.40499 5.47084 5.50747 5.54265 5.59936 5.65902 5.75689 5.82951 5.90951 6.02798 6.12316 6.13441 6.25713 6.28674 6.39605 6.49372 6.50694 6.55704 6.58670 6.72130 6.77803 7.04149 7.31538 7.69839 8.02324 8.29843 8.33089 8.83476 9.57076 9.98664 11.07754 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003891 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.610208 B = 7194.194996 C = 8647.082092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.642 5.642 3 C 0.093 3.907 4 C 0.198 3.802 5 C -0.175 4.175 6 C -0.080 4.080 7 C -0.176 4.176 8 C -0.083 4.083 9 C 0.571 3.429 10 O -0.551 6.551 11 N -0.606 5.606 12 C 0.108 3.892 13 C -0.152 4.152 14 C 0.173 3.827 15 H 0.093 0.907 16 N -0.599 5.599 17 C 0.103 3.897 18 C -0.278 4.278 19 H 0.082 0.918 20 C 0.036 3.964 21 N -0.905 5.905 22 Si 0.911 3.089 23 H -0.287 1.287 24 H -0.306 1.306 25 H -0.271 1.271 26 C 0.064 3.936 27 C -0.140 4.140 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.164 0.836 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.019 0.981 42 H 0.042 0.958 43 H 0.033 0.967 44 H 0.265 0.735 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 19.061 -0.775 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.355 5.355 3 C -0.050 4.050 4 C 0.098 3.902 5 C -0.197 4.197 6 C -0.099 4.099 7 C -0.195 4.195 8 C -0.087 4.087 9 C 0.361 3.639 10 O -0.431 6.431 11 N -0.338 5.338 12 C -0.014 4.014 13 C -0.192 4.192 14 C 0.064 3.936 15 H 0.111 0.889 16 N -0.322 5.322 17 C -0.041 4.041 18 C -0.407 4.407 19 H 0.099 0.901 20 C -0.165 4.165 21 N -0.546 5.546 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.235 1.235 25 H -0.197 1.197 26 C -0.060 4.060 27 C -0.163 4.163 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.180 0.820 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.195 19.636 -0.836 21.294 hybrid contribution -0.945 0.079 -0.787 1.232 sum -9.140 19.716 -1.622 21.792 Atomic orbital electron populations 1.21603 0.79587 1.02545 1.01038 1.46245 1.04840 1.03034 1.81381 1.21634 0.97383 0.84783 1.01221 1.17654 0.90844 0.85862 0.95851 1.20873 0.99664 0.91158 1.08035 1.20949 0.94117 0.97407 0.97413 1.22757 0.95145 0.99711 1.01937 1.19588 0.92320 0.93819 1.02971 1.18004 0.87007 0.82306 0.76551 1.90715 1.69681 1.31535 1.51129 1.48364 1.08426 1.06124 1.70910 1.22257 0.80095 0.98090 1.00993 1.23341 1.00674 0.93226 1.01977 1.21585 0.89996 0.85506 0.96525 0.88934 1.43935 1.83533 1.02205 1.02492 1.21456 0.97921 0.98427 0.86306 1.18785 1.07006 0.88226 1.26652 0.90086 1.25624 0.96651 0.96438 0.97801 1.69756 1.35084 1.06772 1.42965 0.86528 0.80888 0.77918 0.80272 1.21515 1.23491 1.19683 1.23376 0.98907 0.81817 1.01936 1.20678 0.91680 0.98060 1.05867 0.93494 0.91671 0.91331 0.93404 0.91652 0.91099 0.85884 0.85475 0.81974 0.91431 0.90788 0.89987 0.90809 0.96322 0.93962 0.94873 0.92484 0.89988 0.90384 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 10.19 59.85 0.61 1.30 16 2 N -0.64 -6.54 3.41 -187.58 -0.64 -7.18 16 3 C 0.09 0.77 10.19 59.85 0.61 1.38 16 4 C 0.20 2.51 6.55 -83.83 -0.55 1.96 16 5 C -0.17 -2.10 9.20 -39.30 -0.36 -2.46 16 6 C -0.08 -1.05 10.02 -39.67 -0.40 -1.45 16 7 C -0.18 -2.63 8.61 -39.16 -0.34 -2.97 16 8 C -0.08 -1.32 5.87 -104.99 -0.62 -1.93 16 9 C 0.57 9.93 7.81 -12.32 -0.10 9.84 16 10 O -0.55 -10.75 16.60 5.32 0.09 -10.66 16 11 N -0.61 -9.88 3.33 -175.75 -0.58 -10.46 16 12 C 0.11 1.59 6.94 -2.50 -0.02 1.58 16 13 C -0.15 -2.35 6.65 -24.58 -0.16 -2.51 16 14 C 0.17 3.13 3.45 -66.09 -0.23 2.90 16 15 H 0.09 1.70 7.95 -51.93 -0.41 1.29 16 16 N -0.60 -13.14 2.56 -171.39 -0.44 -13.58 16 17 C 0.10 2.11 7.89 59.84 0.47 2.58 16 18 C -0.28 -7.31 9.97 -15.06 -0.15 -7.46 16 19 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 20 C 0.04 0.99 5.50 -17.43 -0.10 0.90 16 21 N -0.91 -26.61 13.97 55.49 0.78 -25.84 16 22 Si 0.91 21.56 24.56 -169.99 -4.17 17.39 16 23 H -0.29 -6.69 6.79 56.52 0.38 -6.30 16 24 H -0.31 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.27 -6.00 6.62 56.52 0.37 -5.63 16 26 C 0.06 1.06 4.46 -3.06 -0.01 1.04 16 27 C -0.14 -2.01 8.75 -38.97 -0.34 -2.35 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 30 H 0.07 0.47 6.19 -51.93 -0.32 0.15 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.07 0.64 6.18 -51.93 -0.32 0.31 16 34 H 0.12 1.18 6.13 -52.49 -0.32 0.86 16 35 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.16 2.53 2.74 -57.88 -0.16 2.37 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.09 7.98 -51.93 -0.41 0.67 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.18 7.16 -51.93 -0.37 0.81 16 41 H 0.02 0.36 7.89 -51.93 -0.41 -0.05 16 42 H 0.04 0.94 2.58 -51.93 -0.13 0.81 16 43 H 0.03 0.62 6.05 -51.93 -0.31 0.30 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.08 1.44 4.48 -51.93 -0.23 1.20 16 46 H 0.08 1.25 6.74 -51.93 -0.35 0.90 16 47 H 0.13 1.88 5.74 -52.48 -0.30 1.58 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -31.44 357.93 -7.87 -39.31 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.62 Total: 3.29 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.68 Total: 2.34 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.89 Total: -57.06 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.17 Total: 17.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.44 -7.87 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980265532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.164 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds