Wall clock time and date at job start Tue Mar 31 2020 11:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99726 * 2 1 4 4 C 1.39703 * 120.00107 * 179.97438 * 2 1 3 5 5 C 1.39029 * 120.00399 * 0.02562 * 4 2 1 6 6 C 1.38201 * 120.22003 * 179.97438 * 5 4 2 7 7 C 1.38025 * 120.22826 * 359.97438 * 6 5 4 8 8 C 1.39576 * 120.00370 * 359.97438 * 7 6 5 9 9 C 1.47863 * 120.11037 * 179.97438 * 8 7 6 10 10 O 1.21548 * 120.00512 * 172.54817 * 9 8 7 11 11 N 1.34777 * 119.99668 * 352.54209 * 9 8 7 12 12 C 1.47470 * 125.62695 * 185.90010 * 11 9 8 13 13 C 1.54911 * 104.80934 * 204.14214 * 12 11 9 14 14 C 1.55159 * 101.61889 * 323.04195 * 13 12 11 15 15 H 1.08999 * 110.71986 * 276.94152 * 14 13 12 16 16 N 1.46502 * 110.72094 * 153.84702 * 14 13 12 17 17 C 1.46495 * 119.99973 * 300.00294 * 16 14 13 18 18 C 1.36941 * 119.99757 * 120.00162 * 16 14 13 19 19 H 1.07994 * 119.99935 * 314.98199 * 18 16 14 20 20 C 1.38810 * 119.99704 * 134.98622 * 18 16 14 21 21 N 1.31612 * 119.99816 * 182.15369 * 20 18 16 22 22 Si 1.86806 * 119.99986 * 2.15017 * 20 18 16 23 23 H 1.48505 * 109.46811 * 85.65650 * 22 20 18 24 24 H 1.48501 * 109.46876 * 205.65060 * 22 20 18 25 25 H 1.48489 * 109.47374 * 325.65686 * 22 20 18 26 26 C 1.47019 * 125.64924 * 5.98424 * 11 9 8 27 27 C 1.38640 * 120.00682 * 180.23557 * 4 2 1 28 28 H 1.09001 * 109.47465 * 269.99921 * 1 2 3 29 29 H 1.09006 * 109.47040 * 30.00517 * 1 2 3 30 30 H 1.09001 * 109.46762 * 149.99802 * 1 2 3 31 31 H 1.09004 * 109.47193 * 269.99416 * 3 2 1 32 32 H 1.09000 * 109.47189 * 29.99947 * 3 2 1 33 33 H 1.08999 * 109.47163 * 149.99594 * 3 2 1 34 34 H 1.08000 * 119.88838 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.88844 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.00205 * 179.97438 * 7 6 5 37 37 H 1.09000 * 110.35119 * 85.32946 * 12 11 9 38 38 H 1.09001 * 110.40809 * 322.98770 * 12 11 9 39 39 H 1.09006 * 111.00467 * 204.94867 * 13 12 11 40 40 H 1.09002 * 111.00550 * 81.14115 * 13 12 11 41 41 H 1.08998 * 109.47136 * 84.70367 * 17 16 14 42 42 H 1.08999 * 109.47292 * 204.70033 * 17 16 14 43 43 H 1.09005 * 109.47224 * 324.70281 * 17 16 14 44 44 H 0.97005 * 119.99681 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.88596 * 59.48842 * 26 11 9 46 46 H 1.08995 * 109.88473 * 298.31854 * 26 11 9 47 47 H 1.08004 * 120.10910 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2098 0.0005 5 6 1.4685 -2.4139 0.0005 6 6 2.1551 -3.6134 0.0005 7 6 3.5353 -3.6241 0.0000 8 6 4.2426 -2.4208 -0.0011 9 6 5.7212 -2.4295 -0.0011 10 8 6.3351 -1.3895 -0.1385 11 7 6.3882 -3.5906 0.1515 12 6 7.8495 -3.7297 0.2929 13 6 8.1577 -5.1720 -0.1809 14 6 6.9273 -5.9479 0.3590 15 1 7.0692 -6.2154 1.4061 16 7 6.6725 -7.1429 -0.4493 17 6 6.3837 -7.0119 -1.8795 18 6 6.7044 -8.3824 0.1321 19 1 7.5046 -8.6404 0.8099 20 6 5.7082 -9.3070 -0.1498 21 7 5.7154 -10.4828 0.4413 22 14 4.3574 -8.8823 -1.3683 23 1 4.8179 -9.1921 -2.7457 24 1 3.1441 -9.6814 -1.0605 25 1 4.0364 -7.4360 -1.2673 26 6 5.7797 -4.9280 0.2026 27 6 3.5500 -1.2100 0.0055 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3792 1.5834 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 0.3885 -2.4119 0.0005 35 1 1.6097 -4.5456 0.0001 36 1 4.0680 -4.5635 0.0004 37 1 8.1433 -3.6018 1.3348 38 1 8.3632 -3.0050 -0.3387 39 1 9.0801 -5.5417 0.2670 40 1 8.2059 -5.2240 -1.2686 41 1 7.3196 -6.9572 -2.4356 42 1 5.8116 -7.8767 -2.2154 43 1 5.8052 -6.1042 -2.0518 44 1 5.0190 -11.1288 0.2446 45 1 5.2341 -5.1227 -0.7208 46 1 5.1047 -4.9958 1.0557 47 1 4.0919 -0.2757 0.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980265532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:31 Heat of formation + Delta-G solvation = 52.691021 kcal Electronic energy + Delta-G solvation = -27149.427232 eV Core-core repulsion = 23527.085117 eV Total energy + Delta-G solvation = -3622.342115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68756 -40.17487 -38.97927 -37.09862 -36.59654 -33.80186 -32.78182 -31.90326 -30.85345 -29.56634 -29.09987 -28.12906 -26.16179 -25.56446 -24.59282 -22.93020 -22.20435 -21.11160 -20.75860 -19.03146 -18.51265 -17.80099 -17.75432 -17.02154 -16.84538 -16.33553 -16.09474 -15.99170 -15.65906 -15.15394 -14.96677 -14.81096 -14.68940 -14.49539 -14.41351 -14.11724 -13.80947 -13.54580 -13.44591 -13.40639 -13.19471 -13.09193 -12.97085 -12.70038 -12.55025 -12.36818 -12.03734 -12.01061 -11.67902 -11.52314 -11.27029 -10.99316 -10.86326 -10.68849 -10.05242 -9.66434 -8.69484 -8.28323 -8.12487 -5.74702 -0.12803 0.54028 1.35970 1.43507 1.55956 1.79597 1.84662 2.22546 2.42512 2.90460 3.09036 3.19405 3.49368 3.71258 3.88286 3.88931 4.05828 4.20617 4.21222 4.25370 4.32450 4.36080 4.41817 4.45502 4.49900 4.52494 4.53638 4.65808 4.74027 4.78326 4.83316 4.84511 4.89807 4.92961 4.95639 4.96362 5.13138 5.17360 5.22908 5.34212 5.41162 5.53241 5.75818 5.99547 6.22826 6.28489 6.37545 6.45413 6.95037 7.01386 7.56761 8.02314 9.01696 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003891 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.610208 B = 7194.194996 C = 8647.082092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.644 5.644 3 C 0.088 3.912 4 C 0.199 3.801 5 C -0.170 4.170 6 C -0.082 4.082 7 C -0.190 4.190 8 C -0.101 4.101 9 C 0.568 3.432 10 O -0.580 6.580 11 N -0.605 5.605 12 C 0.110 3.890 13 C -0.139 4.139 14 C 0.166 3.834 15 H 0.085 0.915 16 N -0.609 5.609 17 C 0.100 3.900 18 C -0.264 4.264 19 H 0.045 0.955 20 C -0.021 4.021 21 N -0.955 5.955 22 Si 0.969 3.031 23 H -0.281 1.281 24 H -0.315 1.315 25 H -0.245 1.245 26 C 0.078 3.922 27 C -0.154 4.154 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.028 0.972 43 H 0.056 0.944 44 H 0.264 0.736 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 21.270 -1.623 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.055 4.055 4 C 0.096 3.904 5 C -0.192 4.192 6 C -0.101 4.101 7 C -0.209 4.209 8 C -0.105 4.105 9 C 0.359 3.641 10 O -0.462 6.462 11 N -0.337 5.337 12 C -0.012 4.012 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.103 0.897 16 N -0.332 5.332 17 C -0.043 4.043 18 C -0.394 4.394 19 H 0.063 0.937 20 C -0.217 4.217 21 N -0.599 5.599 22 Si 0.800 3.200 23 H -0.209 1.209 24 H -0.245 1.245 25 H -0.169 1.169 26 C -0.046 4.046 27 C -0.178 4.178 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.232 21.909 -1.688 24.240 hybrid contribution -0.271 -0.501 -0.472 0.739 sum -10.503 21.409 -2.160 23.944 Atomic orbital electron populations 1.21828 0.77654 1.03866 1.02003 1.46553 1.06154 1.02646 1.80254 1.21758 0.97332 0.84715 1.01667 1.17799 0.90395 0.87298 0.94887 1.21173 1.01053 0.90397 1.06587 1.21195 0.93472 0.98724 0.96668 1.22662 0.96054 0.98851 1.03362 1.19555 0.91370 0.94799 1.04753 1.18327 0.87819 0.81969 0.75938 1.90688 1.70422 1.32375 1.52680 1.48380 1.08977 1.05797 1.70535 1.22327 0.79412 0.97499 1.01957 1.23211 0.99829 0.93043 1.01756 1.21651 0.91851 0.84808 0.95848 0.89706 1.43942 1.84000 1.01771 1.03519 1.21509 0.98758 0.98769 0.85259 1.18628 1.05462 0.90022 1.25263 0.93709 1.26331 0.99192 0.96243 0.99973 1.69905 1.36350 1.08159 1.45449 0.85563 0.77527 0.78893 0.78049 1.20865 1.24498 1.16908 1.23143 0.97935 0.81418 1.02082 1.20706 0.92693 0.97431 1.06936 0.92606 0.89707 0.90758 0.93047 0.89171 0.92274 0.83085 0.83667 0.82840 0.90010 0.90453 0.88880 0.91006 0.95054 0.95381 0.92570 0.92727 0.90274 0.89815 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.19 127.77 1.30 2.27 16 2 N -0.64 -11.41 3.41 -747.38 -2.55 -13.96 16 3 C 0.09 1.28 10.19 127.77 1.30 2.59 16 4 C 0.20 4.62 6.55 38.17 0.25 4.87 16 5 C -0.17 -3.58 9.20 22.45 0.21 -3.37 16 6 C -0.08 -1.95 10.02 22.21 0.22 -1.72 16 7 C -0.19 -5.39 8.61 22.54 0.19 -5.19 16 8 C -0.10 -3.12 5.87 -20.11 -0.12 -3.24 16 9 C 0.57 19.46 7.81 86.79 0.68 20.13 16 10 O -0.58 -22.56 16.60 -3.87 -0.06 -22.63 16 11 N -0.61 -19.06 3.33 -828.23 -2.76 -21.81 16 12 C 0.11 3.08 6.94 86.85 0.60 3.69 16 13 C -0.14 -4.06 6.65 31.99 0.21 -3.85 16 14 C 0.17 5.85 3.45 46.18 0.16 6.01 16 15 H 0.08 3.10 7.95 -2.39 -0.02 3.08 16 16 N -0.61 -26.16 2.56 -696.15 -1.78 -27.94 16 17 C 0.10 3.91 7.89 127.77 1.01 4.92 16 18 C -0.26 -14.06 9.97 84.03 0.84 -13.23 16 19 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 20 C -0.02 -1.15 5.50 84.86 0.47 -0.69 16 21 N -0.96 -57.71 13.97 21.65 0.30 -57.40 16 22 Si 0.97 44.07 24.56 68.60 1.68 45.75 16 23 H -0.28 -12.38 6.79 99.48 0.68 -11.71 16 24 H -0.32 -14.71 7.11 99.48 0.71 -14.00 16 25 H -0.25 -9.97 6.62 99.48 0.66 -9.31 16 26 C 0.08 2.49 4.46 86.73 0.39 2.88 16 27 C -0.15 -4.32 8.75 22.67 0.20 -4.12 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.62 8.07 -2.38 -0.02 0.60 16 30 H 0.07 0.74 6.19 -2.39 -0.01 0.72 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.86 8.07 -2.39 -0.02 0.84 16 33 H 0.06 1.01 6.18 -2.39 -0.01 0.99 16 34 H 0.15 2.28 6.13 -2.91 -0.02 2.26 16 35 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.15 4.54 2.74 -7.98 -0.02 4.52 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.16 7.98 -2.39 -0.02 2.14 16 39 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.07 2.16 7.16 -2.39 -0.02 2.15 16 41 H 0.03 1.14 7.89 -2.39 -0.02 1.12 16 42 H 0.03 1.19 2.58 -2.39 -0.01 1.18 16 43 H 0.06 1.93 6.05 -2.38 -0.01 1.91 16 44 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 45 H 0.08 2.61 4.48 -2.39 -0.01 2.60 16 46 H 0.08 2.59 6.74 -2.39 -0.02 2.58 16 47 H 0.13 3.60 5.74 -2.91 -0.02 3.59 16 Total: -1.00 -68.79 357.93 3.64 -65.15 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.90 Total: 20.92 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 7.91 Total: 11.93 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.78 Total: -121.11 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.68 Total: 45.75 kcal Total: -68.79 3.64 -65.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980265532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.837 kcal (2) G-P(sol) polarization free energy of solvation -68.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds