Wall clock time and date at job start Tue Mar 31 2020 11:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99853 * 2 1 4 4 C 1.39714 * 120.00393 * 179.97438 * 2 1 3 5 5 C 1.39022 * 120.00532 * 185.40729 * 4 2 1 6 6 C 1.38198 * 120.21972 * 180.02562 * 5 4 2 7 7 C 1.38026 * 120.22771 * 359.74553 * 6 5 4 8 8 C 1.39577 * 120.00593 * 0.50814 * 7 6 5 9 9 C 1.47857 * 120.11467 * 179.76891 * 8 7 6 10 10 O 1.21553 * 120.00404 * 187.15776 * 9 8 7 11 11 N 1.34780 * 119.99719 * 7.14980 * 9 8 7 12 12 C 1.47421 * 125.64649 * 174.24210 * 11 9 8 13 13 C 1.54913 * 104.83103 * 155.82757 * 12 11 9 14 14 C 1.55148 * 101.58357 * 37.00764 * 13 12 11 15 15 H 1.08998 * 110.72087 * 83.04014 * 14 13 12 16 16 N 1.46501 * 110.72309 * 206.13862 * 14 13 12 17 17 C 1.46491 * 120.00301 * 59.99837 * 16 14 13 18 18 C 1.36942 * 119.99757 * 240.00106 * 16 14 13 19 19 H 1.08004 * 119.99748 * 334.66352 * 18 16 14 20 20 C 1.38810 * 119.99727 * 154.38852 * 18 16 14 21 21 N 1.31613 * 120.00140 * 354.44799 * 20 18 16 22 22 Si 1.86797 * 119.99816 * 174.45116 * 20 18 16 23 23 H 1.48500 * 109.47403 * 59.99830 * 22 20 18 24 24 H 1.48495 * 109.47357 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47150 * 300.00121 * 22 20 18 26 26 C 1.47021 * 125.64894 * 354.18548 * 11 9 8 27 27 C 1.38643 * 120.00203 * 5.43037 * 4 2 1 28 28 H 1.08999 * 109.47152 * 269.99843 * 1 2 3 29 29 H 1.08997 * 109.47211 * 30.00701 * 1 2 3 30 30 H 1.09001 * 109.46623 * 150.00298 * 1 2 3 31 31 H 1.09002 * 109.47261 * 185.37561 * 3 2 1 32 32 H 1.09001 * 109.46823 * 305.37131 * 3 2 1 33 33 H 1.09000 * 109.47657 * 65.37383 * 3 2 1 34 34 H 1.07997 * 119.88793 * 0.04743 * 5 4 2 35 35 H 1.07998 * 119.88814 * 180.02562 * 6 5 4 36 36 H 1.08000 * 120.00106 * 180.27556 * 7 6 5 37 37 H 1.08998 * 110.36900 * 36.98918 * 12 11 9 38 38 H 1.09001 * 110.46174 * 274.71163 * 12 11 9 39 39 H 1.09002 * 110.99947 * 278.93174 * 13 12 11 40 40 H 1.09004 * 111.03674 * 155.10294 * 13 12 11 41 41 H 1.09006 * 109.47446 * 274.54729 * 17 16 14 42 42 H 1.09004 * 109.47480 * 34.54332 * 17 16 14 43 43 H 1.09000 * 109.47803 * 154.54411 * 17 16 14 44 44 H 0.97008 * 120.00052 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.88018 * 61.68877 * 26 11 9 46 46 H 1.08995 * 109.88425 * 300.52843 * 26 11 9 47 47 H 1.08007 * 120.11185 * 359.95640 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 3.5492 -1.2126 0.1140 6 6 4.2448 -2.4067 0.1145 7 6 3.5682 -3.6050 0.0076 8 6 2.1776 -3.6132 -0.1121 9 6 1.4508 -4.8952 -0.2319 10 8 0.2581 -4.8982 -0.4662 11 7 2.1109 -6.0606 -0.0814 12 6 1.4950 -7.3998 -0.0559 13 6 2.6274 -8.3653 -0.4866 14 6 3.8637 -7.7172 0.1905 15 1 3.9381 -8.0253 1.2333 16 7 5.0897 -8.0555 -0.5367 17 6 5.2380 -7.6698 -1.9421 18 6 6.0972 -8.7323 0.0975 19 1 6.1994 -8.6671 1.1707 20 6 6.9836 -9.5067 -0.6384 21 7 6.7920 -9.6790 -1.9291 22 14 8.4482 -10.3042 0.2031 23 1 7.9684 -11.2218 1.2675 24 1 9.2352 -11.0718 -0.7952 25 1 9.3058 -9.2524 0.8061 26 6 3.5645 -6.2070 0.0833 27 6 1.4752 -2.4080 -0.1125 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 3.2652 1.0719 -0.0963 32 1 1.8639 1.8808 -0.8380 33 1 2.0083 1.7976 0.9342 34 1 4.0837 -0.2783 0.2024 35 1 5.3211 -2.4026 0.2033 36 1 4.1151 -4.5363 0.0129 37 1 0.6655 -7.4494 -0.7612 38 1 1.1519 -7.6423 0.9499 39 1 2.7378 -8.3787 -1.5709 40 1 2.4526 -9.3699 -0.1013 41 1 4.7841 -8.4304 -2.5775 42 1 4.7432 -6.7132 -2.1105 43 1 6.2968 -7.5786 -2.1843 44 1 7.4116 -10.2199 -2.4434 45 1 3.8875 -5.6996 0.9924 46 1 4.0796 -5.7874 -0.7808 47 1 0.3987 -2.4082 -0.2005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980265533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:35 Heat of formation + Delta-G solvation = 67.521216 kcal Electronic energy + Delta-G solvation = -26849.960379 eV Core-core repulsion = 23228.261349 eV Total energy + Delta-G solvation = -3621.699029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40932 -39.05189 -37.39559 -36.15911 -34.75730 -31.87613 -31.27703 -30.69355 -29.33653 -28.37492 -27.89905 -26.10212 -24.95804 -24.35559 -22.95409 -21.68704 -21.14371 -19.59284 -19.36422 -17.51139 -17.05100 -16.55894 -16.01774 -15.76928 -15.30088 -15.28434 -14.92043 -14.65527 -14.05765 -13.91065 -13.68393 -13.42979 -13.29232 -12.89621 -12.79216 -12.74842 -12.53329 -12.45193 -12.22182 -12.19037 -11.83566 -11.48261 -11.09851 -11.04042 -10.89671 -10.77483 -10.42351 -10.32934 -10.27118 -9.97951 -9.94462 -9.88460 -9.57819 -8.94094 -8.57874 -8.29219 -7.39944 -6.81871 -5.81347 -3.29965 0.99473 1.57967 2.89757 3.07091 3.27997 3.34950 3.40848 3.41073 4.01551 4.40380 4.58167 4.73575 4.81607 5.01385 5.06095 5.11594 5.16425 5.23955 5.32190 5.33410 5.40007 5.44412 5.49315 5.53975 5.57766 5.62155 5.64363 5.79229 5.89003 5.92179 6.00476 6.14377 6.18840 6.38039 6.44585 6.54043 6.58491 6.62519 6.77061 6.80638 6.88903 7.06313 7.34294 7.34549 7.66219 7.75700 7.79206 8.34369 8.38940 9.16141 9.76540 10.26403 11.24487 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.003080 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.641929 B = 9087.288298 C =10118.739781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.642 5.642 3 C 0.092 3.908 4 C 0.198 3.802 5 C -0.178 4.178 6 C -0.080 4.080 7 C -0.175 4.175 8 C -0.082 4.082 9 C 0.570 3.430 10 O -0.552 6.552 11 N -0.604 5.604 12 C 0.107 3.893 13 C -0.151 4.151 14 C 0.169 3.831 15 H 0.081 0.919 16 N -0.586 5.586 17 C 0.158 3.842 18 C -0.261 4.261 19 H 0.070 0.930 20 C 0.006 3.994 21 N -0.907 5.907 22 Si 0.908 3.092 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.067 3.933 27 C -0.141 4.141 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.165 0.835 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.018 0.982 42 H -0.005 1.005 43 H 0.065 0.935 44 H 0.254 0.746 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 17.787 4.057 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.355 5.355 3 C -0.051 4.051 4 C 0.098 3.902 5 C -0.200 4.200 6 C -0.099 4.099 7 C -0.195 4.195 8 C -0.085 4.085 9 C 0.360 3.640 10 O -0.432 6.432 11 N -0.336 5.336 12 C -0.016 4.016 13 C -0.192 4.192 14 C 0.059 3.941 15 H 0.099 0.901 16 N -0.307 5.307 17 C 0.014 3.986 18 C -0.390 4.390 19 H 0.087 0.913 20 C -0.192 4.192 21 N -0.551 5.551 22 Si 0.738 3.262 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.057 4.057 27 C -0.164 4.164 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.182 0.818 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.036 0.964 42 H 0.013 0.987 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.013 17.897 3.777 20.391 hybrid contribution 0.778 -0.388 0.316 0.925 sum -8.235 17.509 4.093 19.777 Atomic orbital electron populations 1.21623 0.79505 1.02728 1.01196 1.46221 1.04944 1.02901 1.81451 1.21657 0.97684 0.84947 1.00796 1.17662 0.91211 0.85591 0.95714 1.20900 0.92137 0.98870 1.08135 1.20936 0.99857 0.91553 0.97510 1.22775 0.93838 1.01108 1.01735 1.19607 0.93833 0.92480 1.02623 1.17998 0.86229 0.82872 0.76890 1.90716 1.15139 1.87305 1.50054 1.48321 1.08862 1.05831 1.70577 1.22265 0.96997 0.81292 1.01025 1.23382 0.95235 0.98230 1.02351 1.21391 0.86737 0.89427 0.96559 0.90134 1.43858 1.12952 1.64840 1.09035 1.20857 1.00756 0.92993 0.83975 1.19188 1.05613 1.22177 0.92070 0.91253 1.25111 1.00212 0.97853 0.96063 1.70038 1.37523 1.41698 1.05824 0.86290 0.82273 0.79246 0.78405 1.20881 1.21622 1.20934 1.23284 0.79582 1.01421 1.01425 1.20695 1.00286 0.89715 1.05681 0.93457 0.91691 0.91025 0.90427 0.92747 0.93202 0.85818 0.85435 0.81784 0.90982 0.91717 0.90629 0.90335 0.96365 0.98701 0.91644 0.93522 0.90856 0.89538 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.35 59.85 0.62 1.40 16 2 N -0.64 -6.49 3.41 -187.59 -0.64 -7.13 16 3 C 0.09 0.66 10.59 59.85 0.63 1.30 16 4 C 0.20 2.47 6.53 -83.83 -0.55 1.93 16 5 C -0.18 -2.05 9.26 -39.31 -0.36 -2.41 16 6 C -0.08 -0.98 10.02 -39.67 -0.40 -1.38 16 7 C -0.18 -2.50 8.61 -39.16 -0.34 -2.84 16 8 C -0.08 -1.28 5.87 -104.99 -0.62 -1.90 16 9 C 0.57 10.11 7.81 -12.32 -0.10 10.02 16 10 O -0.55 -11.08 16.60 5.32 0.09 -10.99 16 11 N -0.60 -10.17 3.33 -175.98 -0.59 -10.75 16 12 C 0.11 1.70 6.94 -2.53 -0.02 1.68 16 13 C -0.15 -2.64 6.66 -24.59 -0.16 -2.81 16 14 C 0.17 3.20 3.45 -66.10 -0.23 2.97 16 15 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 16 N -0.59 -13.60 2.93 -171.39 -0.50 -14.11 16 17 C 0.16 3.70 7.95 59.84 0.48 4.17 16 18 C -0.26 -6.71 9.60 -15.06 -0.14 -6.85 16 19 H 0.07 1.72 7.82 -52.48 -0.41 1.31 16 20 C 0.01 0.17 5.19 -17.43 -0.09 0.08 16 21 N -0.91 -25.28 10.53 55.49 0.58 -24.70 16 22 Si 0.91 20.91 29.56 -169.99 -5.02 15.89 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 C 0.07 1.11 4.45 -3.06 -0.01 1.10 16 27 C -0.14 -2.02 8.79 -38.97 -0.34 -2.37 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.07 -51.93 -0.42 0.00 16 30 H 0.07 0.66 6.00 -51.93 -0.31 0.35 16 31 H 0.08 0.51 5.38 -51.93 -0.28 0.23 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.12 1.11 5.81 -52.49 -0.31 0.81 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.17 2.39 2.73 -58.13 -0.16 2.23 16 37 H 0.07 1.16 7.98 -51.93 -0.41 0.75 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.45 7.18 -51.93 -0.37 1.08 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.46 7.63 -51.93 -0.40 0.06 16 42 H -0.01 -0.11 6.05 -51.93 -0.31 -0.42 16 43 H 0.06 1.67 6.64 -51.93 -0.34 1.33 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 45 H 0.07 1.12 6.74 -51.93 -0.35 0.77 16 46 H 0.09 1.51 4.49 -51.93 -0.23 1.28 16 47 H 0.13 1.89 5.64 -52.48 -0.30 1.60 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -30.70 362.95 -8.93 -39.63 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.69 Total: 2.61 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.63 Total: 4.08 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -1.14 Total: -56.69 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.70 -8.93 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980265533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.154 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds