Wall clock time and date at job start Tue Mar 31 2020 11:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99853 * 2 1 4 4 C 1.39714 * 120.00393 * 179.97438 * 2 1 3 5 5 C 1.39022 * 120.00532 * 185.40729 * 4 2 1 6 6 C 1.38198 * 120.21972 * 180.02562 * 5 4 2 7 7 C 1.38026 * 120.22771 * 359.74553 * 6 5 4 8 8 C 1.39577 * 120.00593 * 0.50814 * 7 6 5 9 9 C 1.47857 * 120.11467 * 179.76891 * 8 7 6 10 10 O 1.21553 * 120.00404 * 187.15776 * 9 8 7 11 11 N 1.34780 * 119.99719 * 7.14980 * 9 8 7 12 12 C 1.47421 * 125.64649 * 174.24210 * 11 9 8 13 13 C 1.54913 * 104.83103 * 155.82757 * 12 11 9 14 14 C 1.55148 * 101.58357 * 37.00764 * 13 12 11 15 15 H 1.08998 * 110.72087 * 83.04014 * 14 13 12 16 16 N 1.46501 * 110.72309 * 206.13862 * 14 13 12 17 17 C 1.46491 * 120.00301 * 59.99837 * 16 14 13 18 18 C 1.36942 * 119.99757 * 240.00106 * 16 14 13 19 19 H 1.08004 * 119.99748 * 334.66352 * 18 16 14 20 20 C 1.38810 * 119.99727 * 154.38852 * 18 16 14 21 21 N 1.31613 * 120.00140 * 354.44799 * 20 18 16 22 22 Si 1.86797 * 119.99816 * 174.45116 * 20 18 16 23 23 H 1.48500 * 109.47403 * 59.99830 * 22 20 18 24 24 H 1.48495 * 109.47357 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47150 * 300.00121 * 22 20 18 26 26 C 1.47021 * 125.64894 * 354.18548 * 11 9 8 27 27 C 1.38643 * 120.00203 * 5.43037 * 4 2 1 28 28 H 1.08999 * 109.47152 * 269.99843 * 1 2 3 29 29 H 1.08997 * 109.47211 * 30.00701 * 1 2 3 30 30 H 1.09001 * 109.46623 * 150.00298 * 1 2 3 31 31 H 1.09002 * 109.47261 * 185.37561 * 3 2 1 32 32 H 1.09001 * 109.46823 * 305.37131 * 3 2 1 33 33 H 1.09000 * 109.47657 * 65.37383 * 3 2 1 34 34 H 1.07997 * 119.88793 * 0.04743 * 5 4 2 35 35 H 1.07998 * 119.88814 * 180.02562 * 6 5 4 36 36 H 1.08000 * 120.00106 * 180.27556 * 7 6 5 37 37 H 1.08998 * 110.36900 * 36.98918 * 12 11 9 38 38 H 1.09001 * 110.46174 * 274.71163 * 12 11 9 39 39 H 1.09002 * 110.99947 * 278.93174 * 13 12 11 40 40 H 1.09004 * 111.03674 * 155.10294 * 13 12 11 41 41 H 1.09006 * 109.47446 * 274.54729 * 17 16 14 42 42 H 1.09004 * 109.47480 * 34.54332 * 17 16 14 43 43 H 1.09000 * 109.47803 * 154.54411 * 17 16 14 44 44 H 0.97008 * 120.00052 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.88018 * 61.68877 * 26 11 9 46 46 H 1.08995 * 109.88425 * 300.52843 * 26 11 9 47 47 H 1.08007 * 120.11185 * 359.95640 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 3.5492 -1.2126 0.1140 6 6 4.2448 -2.4067 0.1145 7 6 3.5682 -3.6050 0.0076 8 6 2.1776 -3.6132 -0.1121 9 6 1.4508 -4.8952 -0.2319 10 8 0.2581 -4.8982 -0.4662 11 7 2.1109 -6.0606 -0.0814 12 6 1.4950 -7.3998 -0.0559 13 6 2.6274 -8.3653 -0.4866 14 6 3.8637 -7.7172 0.1905 15 1 3.9381 -8.0253 1.2333 16 7 5.0897 -8.0555 -0.5367 17 6 5.2380 -7.6698 -1.9421 18 6 6.0972 -8.7323 0.0975 19 1 6.1994 -8.6671 1.1707 20 6 6.9836 -9.5067 -0.6384 21 7 6.7920 -9.6790 -1.9291 22 14 8.4482 -10.3042 0.2031 23 1 7.9684 -11.2218 1.2675 24 1 9.2352 -11.0718 -0.7952 25 1 9.3058 -9.2524 0.8061 26 6 3.5645 -6.2070 0.0833 27 6 1.4752 -2.4080 -0.1125 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 3.2652 1.0719 -0.0963 32 1 1.8639 1.8808 -0.8380 33 1 2.0083 1.7976 0.9342 34 1 4.0837 -0.2783 0.2024 35 1 5.3211 -2.4026 0.2033 36 1 4.1151 -4.5363 0.0129 37 1 0.6655 -7.4494 -0.7612 38 1 1.1519 -7.6423 0.9499 39 1 2.7378 -8.3787 -1.5709 40 1 2.4526 -9.3699 -0.1013 41 1 4.7841 -8.4304 -2.5775 42 1 4.7432 -6.7132 -2.1105 43 1 6.2968 -7.5786 -2.1843 44 1 7.4116 -10.2199 -2.4434 45 1 3.8875 -5.6996 0.9924 46 1 4.0796 -5.7874 -0.7808 47 1 0.3987 -2.4082 -0.2005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980265533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:34 Heat of formation + Delta-G solvation = 50.328633 kcal Electronic energy + Delta-G solvation = -26850.705905 eV Core-core repulsion = 23228.261349 eV Total energy + Delta-G solvation = -3622.444556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64699 -40.13375 -38.87821 -37.05884 -36.48689 -33.46396 -32.58871 -31.80968 -30.59321 -29.34145 -29.08226 -28.03478 -26.03391 -25.50155 -24.51806 -22.92798 -22.15444 -21.03221 -20.71761 -18.91096 -18.51039 -17.75308 -17.46525 -16.90608 -16.57885 -16.22809 -16.07453 -15.87562 -15.63374 -15.02812 -14.88763 -14.83994 -14.54680 -14.44122 -14.19504 -13.96371 -13.51484 -13.37089 -13.28500 -13.12112 -12.96123 -12.88900 -12.76191 -12.59351 -12.45608 -12.27804 -12.07978 -11.95396 -11.83468 -11.71305 -11.37342 -10.98472 -10.84046 -10.54908 -10.01459 -9.62945 -8.72943 -8.24657 -7.80902 -5.30689 -0.09285 0.58726 1.53248 1.54149 1.60526 1.83273 1.87507 2.25368 2.54450 2.94412 3.33590 3.35037 3.69735 3.77095 3.92342 3.94836 4.03572 4.24747 4.27853 4.28631 4.36929 4.41636 4.49506 4.51653 4.56816 4.59657 4.69666 4.77777 4.78319 4.85938 4.92704 4.95581 4.96891 5.00442 5.13416 5.19124 5.25474 5.36132 5.40425 5.45889 5.57875 5.68063 5.77416 5.80385 6.30672 6.36204 6.43874 6.49432 7.03070 7.18536 7.86952 8.32914 9.23805 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.003080 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.641929 B = 9087.288298 C =10118.739781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.645 5.645 3 C 0.086 3.914 4 C 0.198 3.802 5 C -0.172 4.172 6 C -0.078 4.078 7 C -0.186 4.186 8 C -0.102 4.102 9 C 0.566 3.434 10 O -0.584 6.584 11 N -0.605 5.605 12 C 0.112 3.888 13 C -0.142 4.142 14 C 0.163 3.837 15 H 0.089 0.911 16 N -0.599 5.599 17 C 0.177 3.823 18 C -0.263 4.263 19 H 0.079 0.921 20 C -0.049 4.049 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.300 1.300 25 H -0.275 1.275 26 C 0.084 3.916 27 C -0.157 4.157 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.159 0.841 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.085 0.915 41 H -0.009 1.009 42 H 0.019 0.981 43 H 0.038 0.962 44 H 0.247 0.753 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.932 20.038 5.611 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.357 5.357 3 C -0.056 4.056 4 C 0.096 3.904 5 C -0.194 4.194 6 C -0.097 4.097 7 C -0.205 4.205 8 C -0.106 4.106 9 C 0.358 3.642 10 O -0.467 6.467 11 N -0.336 5.336 12 C -0.010 4.010 13 C -0.182 4.182 14 C 0.054 3.946 15 H 0.107 0.893 16 N -0.320 5.320 17 C 0.032 3.968 18 C -0.393 4.393 19 H 0.097 0.903 20 C -0.244 4.244 21 N -0.586 5.586 22 Si 0.798 3.202 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.201 1.201 26 C -0.040 4.040 27 C -0.181 4.181 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.009 0.991 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.573 20.187 5.364 22.579 hybrid contribution 0.555 -0.947 -0.145 1.107 sum -8.018 19.240 5.219 21.487 Atomic orbital electron populations 1.21727 0.78886 1.03213 1.01641 1.46518 1.05673 1.03071 1.80444 1.21878 0.97856 0.83746 1.02126 1.17810 0.91869 0.85894 0.94862 1.21244 0.91771 0.99908 1.06462 1.21227 1.01067 0.90998 0.96373 1.22703 0.93161 1.01839 1.02845 1.19544 0.94486 0.91767 1.04762 1.18410 0.86011 0.83655 0.76150 1.90685 1.16493 1.87779 1.51697 1.48367 1.08927 1.06021 1.70331 1.22264 0.96175 0.80530 1.02067 1.23222 0.95212 0.98965 1.00848 1.21572 0.85526 0.90983 0.96492 0.89314 1.43984 1.14227 1.64890 1.08904 1.20527 0.98912 0.93265 0.84091 1.19573 1.05889 1.21220 0.92581 0.90334 1.25838 1.02954 0.99006 0.96613 1.70215 1.38385 1.42844 1.07118 0.85305 0.79327 0.78343 0.77195 1.20246 1.22641 1.20106 1.23089 0.79390 0.99494 1.02036 1.20703 1.00071 0.90337 1.06986 0.93020 0.89349 0.92411 0.89705 0.91341 0.91876 0.82803 0.83053 0.82404 0.91236 0.89668 0.92717 0.89673 0.99062 0.96247 0.94288 0.94324 0.89001 0.90280 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.35 127.77 1.32 2.67 16 2 N -0.64 -11.53 3.41 -747.40 -2.55 -14.08 16 3 C 0.09 0.94 10.59 127.77 1.35 2.29 16 4 C 0.20 4.57 6.53 38.17 0.25 4.82 16 5 C -0.17 -3.44 9.26 22.45 0.21 -3.24 16 6 C -0.08 -1.72 10.02 22.21 0.22 -1.50 16 7 C -0.19 -5.08 8.61 22.54 0.19 -4.89 16 8 C -0.10 -3.18 5.87 -20.11 -0.12 -3.29 16 9 C 0.57 20.17 7.81 86.79 0.68 20.85 16 10 O -0.58 -23.87 16.60 -3.88 -0.06 -23.94 16 11 N -0.60 -20.08 3.33 -828.96 -2.76 -22.83 16 12 C 0.11 3.49 6.94 86.86 0.60 4.09 16 13 C -0.14 -4.92 6.66 31.98 0.21 -4.70 16 14 C 0.16 6.02 3.45 46.18 0.16 6.18 16 15 H 0.09 3.14 7.94 -2.39 -0.02 3.12 16 16 N -0.60 -27.72 2.93 -696.17 -2.04 -29.76 16 17 C 0.18 8.41 7.95 127.77 1.02 9.43 16 18 C -0.26 -13.37 9.60 84.03 0.81 -12.57 16 19 H 0.08 3.79 7.82 -2.91 -0.02 3.76 16 20 C -0.05 -2.61 5.19 84.86 0.44 -2.17 16 21 N -0.94 -53.56 10.53 21.65 0.23 -53.34 16 22 Si 0.97 42.99 29.56 68.60 2.03 45.02 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.08 2.69 4.45 86.73 0.39 3.08 16 27 C -0.16 -4.48 8.79 22.67 0.20 -4.29 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.92 8.07 -2.39 -0.02 0.90 16 30 H 0.06 1.05 6.00 -2.39 -0.01 1.03 16 31 H 0.08 0.79 5.38 -2.39 -0.01 0.78 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.15 2.11 5.81 -2.91 -0.02 2.09 16 35 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.16 4.41 2.73 -8.21 -0.02 4.39 16 37 H 0.07 2.23 7.98 -2.39 -0.02 2.21 16 38 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 2.13 7.18 -2.39 -0.02 2.11 16 40 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 41 H -0.01 -0.47 7.63 -2.38 -0.02 -0.49 16 42 H 0.02 0.81 6.05 -2.38 -0.01 0.80 16 43 H 0.04 2.04 6.64 -2.39 -0.02 2.02 16 44 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 45 H 0.09 2.66 6.74 -2.38 -0.02 2.64 16 46 H 0.08 2.70 4.49 -2.39 -0.01 2.69 16 47 H 0.12 3.64 5.64 -2.91 -0.02 3.62 16 Total: -1.00 -66.79 362.95 3.75 -63.04 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.97 Total: 19.12 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 7.93 Total: 16.76 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -7.12 Total: -120.01 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.79 3.75 -63.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980265533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.366 kcal (2) G-P(sol) polarization free energy of solvation -66.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds