Wall clock time and date at job start Tue Mar 31 2020 11:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 111.00058 * 2 1 4 4 C 1.38866 * 110.99949 * 123.95734 * 2 1 3 5 5 C 1.38964 * 120.17533 * 299.99722 * 4 2 1 6 6 C 1.37954 * 120.06736 * 180.29486 * 5 4 2 7 7 C 1.38611 * 120.41642 * 359.45088 * 6 5 4 8 8 C 1.37749 * 120.35609 * 0.55215 * 7 6 5 9 9 C 1.39734 * 119.92540 * 359.72473 * 8 7 6 10 10 C 1.47433 * 120.20813 * 179.97438 * 9 8 7 11 11 O 1.21603 * 119.99819 * 135.68213 * 10 9 8 12 12 N 1.34778 * 119.99925 * 315.68027 * 10 9 8 13 13 C 1.47024 * 125.64821 * 4.02769 * 12 10 9 14 14 C 1.54326 * 107.26777 * 181.02104 * 13 12 10 15 15 C 1.55152 * 102.94327 * 22.19486 * 14 13 12 16 16 H 1.09006 * 111.01027 * 82.60576 * 15 14 13 17 17 N 1.46502 * 111.00535 * 206.42016 * 15 14 13 18 18 C 1.46504 * 119.99593 * 59.99978 * 17 15 14 19 19 C 1.36930 * 120.00120 * 240.00130 * 17 15 14 20 20 H 1.08004 * 120.00171 * 316.34616 * 19 17 15 21 21 C 1.38811 * 120.00090 * 136.35158 * 19 17 15 22 22 N 1.31620 * 120.00290 * 170.03208 * 21 19 17 23 23 Si 1.86800 * 119.99884 * 350.02799 * 21 19 17 24 24 H 1.48504 * 109.46730 * 90.92912 * 23 21 19 25 25 H 1.48502 * 109.47399 * 210.92541 * 23 21 19 26 26 H 1.48496 * 109.47389 * 330.93187 * 23 21 19 27 27 C 1.47425 * 125.64454 * 183.71886 * 12 10 9 28 28 H 1.08996 * 109.47076 * 296.04685 * 1 2 3 29 29 H 1.08998 * 109.46921 * 56.04324 * 1 2 3 30 30 H 1.08997 * 109.46988 * 176.04192 * 1 2 3 31 31 H 1.08995 * 109.47194 * 183.94875 * 3 2 1 32 32 H 1.08998 * 109.47112 * 303.95813 * 3 2 1 33 33 H 1.09005 * 109.47053 * 63.95493 * 3 2 1 34 34 H 1.08001 * 119.96935 * 0.02845 * 5 4 2 35 35 H 1.07995 * 119.79383 * 179.70475 * 6 5 4 36 36 H 1.08002 * 119.82239 * 180.25113 * 7 6 5 37 37 H 1.08003 * 120.03740 * 179.69960 * 8 7 6 38 38 H 1.08999 * 109.88030 * 300.43538 * 13 12 10 39 39 H 1.08997 * 109.87966 * 61.45370 * 13 12 10 40 40 H 1.09003 * 110.71676 * 140.55368 * 14 13 12 41 41 H 1.08991 * 110.72234 * 263.64990 * 14 13 12 42 42 H 1.09001 * 109.47023 * 91.19757 * 18 17 15 43 43 H 1.08999 * 109.46583 * 211.19691 * 18 17 15 44 44 H 1.09004 * 109.47008 * 331.19301 * 18 17 15 45 45 H 0.96997 * 120.00204 * 179.97438 * 22 21 19 46 46 H 1.08998 * 110.36561 * 274.74584 * 27 12 10 47 47 H 1.09003 * 110.37019 * 37.07161 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7242 1.0753 5 6 1.6563 -0.3457 2.3759 6 6 2.1568 -1.0630 3.4426 7 6 2.9618 -2.1708 3.2275 8 6 3.2805 -2.5613 1.9456 9 6 2.7862 -1.8419 0.8545 10 6 3.1238 -2.2540 -0.5202 11 8 2.2595 -2.2855 -1.3751 12 7 4.3903 -2.5958 -0.8294 13 6 5.5103 -2.6827 0.1192 14 6 6.7639 -3.0819 -0.6875 15 6 6.4012 -2.6461 -2.1317 16 1 6.5950 -1.5836 -2.2796 17 7 7.1232 -3.4511 -3.1201 18 6 6.9378 -4.9039 -3.1578 19 6 7.9711 -2.8458 -4.0087 20 1 7.6742 -1.9318 -4.5016 21 6 9.2123 -3.4069 -4.2760 22 7 9.9448 -2.9429 -5.2662 23 14 9.8430 -4.8205 -3.2304 24 1 9.4278 -6.1099 -3.8390 25 1 11.3252 -4.7611 -3.1598 26 1 9.2775 -4.7144 -1.8615 27 6 4.8807 -2.9506 -2.1737 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7045 1.8723 0.9233 34 1 1.0261 0.5136 2.5519 35 1 1.9167 -0.7621 4.4516 36 1 3.3452 -2.7278 4.0697 37 1 3.9121 -3.4224 1.7840 38 1 5.6685 -1.7151 0.5955 39 1 5.2975 -3.4379 0.8757 40 1 7.6405 -2.5414 -0.3303 41 1 6.9288 -4.1580 -0.6364 42 1 6.1287 -5.1492 -3.8457 43 1 7.8587 -5.3789 -3.4958 44 1 6.6882 -5.2643 -2.1598 45 1 10.8123 -3.3347 -5.4528 46 1 4.7087 -4.0083 -2.3732 47 1 4.3919 -2.3366 -2.9301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980537775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:39 Heat of formation + Delta-G solvation = 51.864352 kcal Electronic energy + Delta-G solvation = -27294.512349 eV Core-core repulsion = 23672.134388 eV Total energy + Delta-G solvation = -3622.377962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63157 -39.12091 -37.26002 -36.75264 -34.91146 -32.07524 -31.35866 -30.19552 -29.96645 -28.17864 -27.76535 -26.24549 -25.01710 -24.37962 -22.94219 -22.17989 -21.27070 -19.49720 -19.38155 -17.40100 -17.04440 -16.81366 -16.23664 -15.84953 -15.58750 -15.13877 -15.03611 -14.81425 -14.21935 -14.00763 -13.61938 -13.55164 -13.23288 -13.11294 -12.86136 -12.64430 -12.52844 -12.44521 -12.32441 -12.16460 -12.03024 -11.86211 -11.84526 -11.45280 -11.28448 -10.92467 -10.78800 -10.58750 -10.13372 -9.88616 -9.67111 -9.57510 -9.18514 -8.93713 -8.61515 -8.60078 -8.29866 -6.80021 -5.99971 -3.57322 0.80460 1.01795 2.91522 3.18080 3.27573 3.41181 3.46188 3.60671 3.64058 4.46467 4.51593 4.58878 4.70606 4.83746 4.88199 5.04788 5.07569 5.08460 5.19293 5.23356 5.32071 5.34008 5.38509 5.40181 5.42165 5.65229 5.69255 5.72093 5.75714 5.78473 5.94381 6.00115 6.10754 6.12515 6.17081 6.26213 6.34303 6.40649 6.48456 6.54903 6.64123 6.68945 6.70642 6.82864 7.18672 7.80230 8.05666 8.37127 8.46101 8.91494 9.63697 10.04936 11.13969 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.003303 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.776381 B = 8474.189838 C = 9054.266419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.504 5.504 3 C 0.030 3.970 4 C 0.138 3.862 5 C -0.158 4.158 6 C -0.094 4.094 7 C -0.128 4.128 8 C -0.088 4.088 9 C -0.098 4.098 10 C 0.577 3.423 11 O -0.516 6.516 12 N -0.613 5.613 13 C 0.102 3.898 14 C -0.157 4.157 15 C 0.174 3.826 16 H 0.088 0.912 17 N -0.598 5.598 18 C 0.106 3.894 19 C -0.274 4.274 20 H 0.080 0.920 21 C 0.036 3.964 22 N -0.907 5.907 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.305 1.305 26 H -0.269 1.269 27 C 0.092 3.908 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.019 0.981 43 H 0.041 0.959 44 H 0.034 0.966 45 H 0.264 0.736 46 H 0.065 0.935 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.422 4.181 19.489 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.225 5.225 3 C -0.117 4.117 4 C 0.042 3.958 5 C -0.178 4.178 6 C -0.113 4.113 7 C -0.146 4.146 8 C -0.107 4.107 9 C -0.102 4.102 10 C 0.365 3.635 11 O -0.392 6.392 12 N -0.348 5.348 13 C -0.022 4.022 14 C -0.197 4.197 15 C 0.065 3.935 16 H 0.106 0.894 17 N -0.320 5.320 18 C -0.038 4.038 19 C -0.402 4.402 20 H 0.097 0.903 21 C -0.165 4.165 22 N -0.548 5.548 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.233 1.233 26 H -0.194 1.194 27 C -0.032 4.032 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.038 0.962 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.646 3.964 18.431 24.499 hybrid contribution 0.261 -0.468 1.341 1.444 sum -15.384 3.496 19.772 25.295 Atomic orbital electron populations 1.22383 0.85264 1.03003 1.00345 1.59173 1.08820 1.13833 1.40638 1.22463 1.01252 0.87217 1.00726 1.18651 0.94769 0.93435 0.88907 1.21615 1.02095 1.01201 0.92879 1.21136 0.96516 0.94938 0.98728 1.21102 0.99156 0.97494 0.96823 1.21503 0.98084 0.99371 0.91765 1.19951 0.99883 0.96731 0.93644 1.17572 0.81138 0.77412 0.87403 1.90782 1.46755 1.52378 1.49249 1.48381 1.07841 1.67737 1.10838 1.22188 0.86887 1.00669 0.92427 1.23275 0.95857 1.02262 0.98330 1.21651 0.88295 0.96536 0.87011 0.89377 1.43895 1.50744 1.01570 1.35816 1.21378 0.98971 0.85522 0.97934 1.18805 0.94084 1.10366 1.16985 0.90253 1.25603 0.95583 0.98460 0.96825 1.69771 1.12662 1.43108 1.29212 0.86597 0.76319 0.81824 0.81905 1.21464 1.23323 1.19354 1.22880 0.96828 1.00482 0.82960 0.95526 0.90777 0.90897 0.91123 0.90611 0.95297 0.85850 0.85780 0.85392 0.84714 0.91757 0.92018 0.90268 0.90852 0.96244 0.94092 0.94739 0.92569 0.91639 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 9.34 60.07 0.56 0.94 16 2 N -0.50 -6.44 3.76 -186.63 -0.70 -7.14 16 3 C 0.03 0.31 9.38 60.06 0.56 0.87 16 4 C 0.14 1.72 4.70 -83.62 -0.39 1.32 16 5 C -0.16 -1.53 8.55 -39.42 -0.34 -1.87 16 6 C -0.09 -0.78 10.03 -39.55 -0.40 -1.18 16 7 C -0.13 -1.10 10.02 -39.62 -0.40 -1.50 16 8 C -0.09 -0.95 8.52 -39.20 -0.33 -1.29 16 9 C -0.10 -1.33 5.48 -104.80 -0.57 -1.91 16 10 C 0.58 9.67 7.18 -12.52 -0.09 9.58 16 11 O -0.52 -10.38 16.53 5.27 0.09 -10.29 16 12 N -0.61 -9.84 3.32 -171.64 -0.57 -10.41 16 13 C 0.10 1.36 5.58 -3.06 -0.02 1.34 16 14 C -0.16 -2.51 6.50 -24.90 -0.16 -2.67 16 15 C 0.17 3.35 3.56 -65.66 -0.23 3.12 16 16 H 0.09 1.77 7.96 -51.93 -0.41 1.36 16 17 N -0.60 -13.81 2.48 -170.89 -0.42 -14.23 16 18 C 0.11 2.25 8.00 59.85 0.48 2.73 16 19 C -0.27 -7.53 9.91 -15.06 -0.15 -7.67 16 20 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 21 C 0.04 1.03 5.45 -17.43 -0.09 0.93 16 22 N -0.91 -27.43 13.97 55.49 0.78 -26.66 16 23 Si 0.90 22.04 24.70 -169.99 -4.20 17.84 16 24 H -0.29 -6.85 6.70 56.52 0.38 -6.47 16 25 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.27 -6.23 7.02 56.52 0.40 -5.84 16 27 C 0.09 1.67 6.44 -2.41 -0.02 1.66 16 28 H 0.03 0.22 7.11 -51.93 -0.37 -0.14 16 29 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 33 H 0.03 0.25 7.33 -51.93 -0.38 -0.13 16 34 H 0.12 0.99 7.01 -52.49 -0.37 0.62 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.14 1.31 5.64 -52.48 -0.30 1.02 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.69 5.81 -51.93 -0.30 0.39 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.07 1.20 6.42 -51.93 -0.33 0.87 16 42 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 43 H 0.04 0.94 2.98 -51.93 -0.15 0.79 16 44 H 0.03 0.64 6.42 -51.93 -0.33 0.30 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 1.20 7.02 -51.93 -0.36 0.84 16 47 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -32.93 365.41 -8.24 -41.17 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.12 Total: -0.20 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.59 Total: 4.42 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.92 Total: -58.44 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.20 Total: 17.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.93 -8.24 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980537775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.033 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds