Wall clock time and date at job start Tue Mar 31 2020 11:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 111.00058 * 2 1 4 4 C 1.38866 * 110.99949 * 123.95734 * 2 1 3 5 5 C 1.38964 * 120.17533 * 299.99722 * 4 2 1 6 6 C 1.37954 * 120.06736 * 180.29486 * 5 4 2 7 7 C 1.38611 * 120.41642 * 359.45088 * 6 5 4 8 8 C 1.37749 * 120.35609 * 0.55215 * 7 6 5 9 9 C 1.39734 * 119.92540 * 359.72473 * 8 7 6 10 10 C 1.47433 * 120.20813 * 179.97438 * 9 8 7 11 11 O 1.21603 * 119.99819 * 135.68213 * 10 9 8 12 12 N 1.34778 * 119.99925 * 315.68027 * 10 9 8 13 13 C 1.47024 * 125.64821 * 4.02769 * 12 10 9 14 14 C 1.54326 * 107.26777 * 181.02104 * 13 12 10 15 15 C 1.55152 * 102.94327 * 22.19486 * 14 13 12 16 16 H 1.09006 * 111.01027 * 82.60576 * 15 14 13 17 17 N 1.46502 * 111.00535 * 206.42016 * 15 14 13 18 18 C 1.46504 * 119.99593 * 59.99978 * 17 15 14 19 19 C 1.36930 * 120.00120 * 240.00130 * 17 15 14 20 20 H 1.08004 * 120.00171 * 316.34616 * 19 17 15 21 21 C 1.38811 * 120.00090 * 136.35158 * 19 17 15 22 22 N 1.31620 * 120.00290 * 170.03208 * 21 19 17 23 23 Si 1.86800 * 119.99884 * 350.02799 * 21 19 17 24 24 H 1.48504 * 109.46730 * 90.92912 * 23 21 19 25 25 H 1.48502 * 109.47399 * 210.92541 * 23 21 19 26 26 H 1.48496 * 109.47389 * 330.93187 * 23 21 19 27 27 C 1.47425 * 125.64454 * 183.71886 * 12 10 9 28 28 H 1.08996 * 109.47076 * 296.04685 * 1 2 3 29 29 H 1.08998 * 109.46921 * 56.04324 * 1 2 3 30 30 H 1.08997 * 109.46988 * 176.04192 * 1 2 3 31 31 H 1.08995 * 109.47194 * 183.94875 * 3 2 1 32 32 H 1.08998 * 109.47112 * 303.95813 * 3 2 1 33 33 H 1.09005 * 109.47053 * 63.95493 * 3 2 1 34 34 H 1.08001 * 119.96935 * 0.02845 * 5 4 2 35 35 H 1.07995 * 119.79383 * 179.70475 * 6 5 4 36 36 H 1.08002 * 119.82239 * 180.25113 * 7 6 5 37 37 H 1.08003 * 120.03740 * 179.69960 * 8 7 6 38 38 H 1.08999 * 109.88030 * 300.43538 * 13 12 10 39 39 H 1.08997 * 109.87966 * 61.45370 * 13 12 10 40 40 H 1.09003 * 110.71676 * 140.55368 * 14 13 12 41 41 H 1.08991 * 110.72234 * 263.64990 * 14 13 12 42 42 H 1.09001 * 109.47023 * 91.19757 * 18 17 15 43 43 H 1.08999 * 109.46583 * 211.19691 * 18 17 15 44 44 H 1.09004 * 109.47008 * 331.19301 * 18 17 15 45 45 H 0.96997 * 120.00204 * 179.97438 * 22 21 19 46 46 H 1.08998 * 110.36561 * 274.74584 * 27 12 10 47 47 H 1.09003 * 110.37019 * 37.07161 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7242 1.0753 5 6 1.6563 -0.3457 2.3759 6 6 2.1568 -1.0630 3.4426 7 6 2.9618 -2.1708 3.2275 8 6 3.2805 -2.5613 1.9456 9 6 2.7862 -1.8419 0.8545 10 6 3.1238 -2.2540 -0.5202 11 8 2.2595 -2.2855 -1.3751 12 7 4.3903 -2.5958 -0.8294 13 6 5.5103 -2.6827 0.1192 14 6 6.7639 -3.0819 -0.6875 15 6 6.4012 -2.6461 -2.1317 16 1 6.5950 -1.5836 -2.2796 17 7 7.1232 -3.4511 -3.1201 18 6 6.9378 -4.9039 -3.1578 19 6 7.9711 -2.8458 -4.0087 20 1 7.6742 -1.9318 -4.5016 21 6 9.2123 -3.4069 -4.2760 22 7 9.9448 -2.9429 -5.2662 23 14 9.8430 -4.8205 -3.2304 24 1 9.4278 -6.1099 -3.8390 25 1 11.3252 -4.7611 -3.1598 26 1 9.2775 -4.7144 -1.8615 27 6 4.8807 -2.9506 -2.1737 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7045 1.8723 0.9233 34 1 1.0261 0.5136 2.5519 35 1 1.9167 -0.7621 4.4516 36 1 3.3452 -2.7278 4.0697 37 1 3.9121 -3.4224 1.7840 38 1 5.6685 -1.7151 0.5955 39 1 5.2975 -3.4379 0.8757 40 1 7.6405 -2.5414 -0.3303 41 1 6.9288 -4.1580 -0.6364 42 1 6.1287 -5.1492 -3.8457 43 1 7.8587 -5.3789 -3.4958 44 1 6.6882 -5.2643 -2.1598 45 1 10.8123 -3.3347 -5.4528 46 1 4.7087 -4.0083 -2.3732 47 1 4.3919 -2.3366 -2.9301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980537775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:39 Heat of formation + Delta-G solvation = 30.396937 kcal Electronic energy + Delta-G solvation = -27295.443246 eV Core-core repulsion = 23672.134388 eV Total energy + Delta-G solvation = -3623.308859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63401 -40.26655 -38.70352 -37.55050 -36.57892 -33.87334 -32.58120 -31.34905 -30.88208 -29.56649 -28.56859 -28.10326 -26.14613 -25.36642 -24.46346 -23.32372 -22.13190 -21.01241 -20.52285 -19.05599 -18.44743 -17.85601 -17.64727 -17.01236 -16.78217 -16.41390 -15.99398 -15.69980 -15.40522 -15.22276 -14.91490 -14.87991 -14.60738 -14.51422 -14.38661 -13.98341 -13.87640 -13.52139 -13.36699 -13.24167 -13.10193 -13.04226 -12.76105 -12.70880 -12.48956 -12.43329 -12.30476 -12.10519 -11.98784 -11.57292 -11.36165 -10.94509 -10.70731 -9.96646 -9.74085 -9.58460 -9.40492 -8.72297 -8.17718 -5.74735 -0.01116 0.30198 1.34410 1.43599 1.56803 1.75956 2.00996 2.42328 2.75857 2.85258 3.10767 3.24225 3.51291 3.78480 3.86413 4.01130 4.08531 4.14569 4.17235 4.26908 4.31817 4.35332 4.38835 4.44002 4.51711 4.53819 4.59252 4.63759 4.69991 4.72563 4.81060 4.88439 4.90185 4.92801 4.97204 4.99857 5.20863 5.23862 5.31766 5.34286 5.42369 5.47921 5.80513 5.92079 5.94163 6.17637 6.37962 6.57393 6.94266 7.19996 7.54690 7.98845 8.99578 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.003303 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.776381 B = 8474.189838 C = 9054.266419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.537 5.537 3 C 0.033 3.967 4 C 0.121 3.879 5 C -0.159 4.159 6 C -0.083 4.083 7 C -0.121 4.121 8 C -0.089 4.089 9 C -0.130 4.130 10 C 0.574 3.426 11 O -0.564 6.564 12 N -0.614 5.614 13 C 0.108 3.892 14 C -0.146 4.146 15 C 0.169 3.831 16 H 0.068 0.932 17 N -0.609 5.609 18 C 0.103 3.897 19 C -0.268 4.268 20 H 0.034 0.966 21 C -0.022 4.022 22 N -0.958 5.958 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.312 1.312 26 H -0.242 1.242 27 C 0.104 3.896 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.021 0.979 43 H 0.029 0.971 44 H 0.070 0.930 45 H 0.265 0.735 46 H 0.065 0.935 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.071 3.114 24.444 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.259 5.259 3 C -0.113 4.113 4 C 0.026 3.974 5 C -0.179 4.179 6 C -0.101 4.101 7 C -0.139 4.139 8 C -0.108 4.108 9 C -0.134 4.134 10 C 0.365 3.635 11 O -0.443 6.443 12 N -0.348 5.348 13 C -0.014 4.014 14 C -0.186 4.186 15 C 0.061 3.939 16 H 0.086 0.914 17 N -0.333 5.333 18 C -0.040 4.040 19 C -0.398 4.398 20 H 0.051 0.949 21 C -0.218 4.218 22 N -0.601 5.601 23 Si 0.798 3.202 24 H -0.204 1.204 25 H -0.241 1.241 26 H -0.165 1.165 27 C -0.021 4.021 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.324 2.902 23.441 28.712 hybrid contribution 0.337 -0.028 -0.225 0.407 sum -15.986 2.874 23.216 28.333 Atomic orbital electron populations 1.22338 0.84457 1.02076 1.01692 1.59101 1.09876 1.14916 1.41972 1.22428 1.00189 0.86670 1.01980 1.18852 0.95085 0.93510 0.89986 1.21801 1.02236 1.01914 0.91945 1.21590 0.94783 0.93902 0.99858 1.21488 0.98262 0.97421 0.96714 1.21636 0.98084 0.99234 0.91864 1.19854 1.02579 0.98748 0.92203 1.18211 0.80506 0.76215 0.88606 1.90742 1.48084 1.54349 1.51125 1.48430 1.08580 1.67564 1.10230 1.22315 0.84475 1.02642 0.91931 1.23149 0.97412 1.02644 0.95352 1.21634 0.88487 0.95159 0.88660 0.91399 1.43913 1.50457 1.02648 1.36267 1.21458 0.98412 0.84003 1.00123 1.18615 0.94902 1.09004 1.17260 0.94876 1.26344 0.95688 1.01861 0.97925 1.69932 1.13296 1.45545 1.31345 0.85498 0.75016 0.78436 0.81229 1.20373 1.24096 1.16500 1.22539 0.95794 0.99794 0.84010 0.93186 0.90456 0.92789 0.92678 0.90355 0.93097 0.84144 0.82362 0.82069 0.83767 0.90295 0.88537 0.89492 0.90175 0.96048 0.95327 0.91146 0.92631 0.91636 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 9.34 127.69 1.19 2.03 16 2 N -0.54 -13.66 3.76 -744.39 -2.80 -16.46 16 3 C 0.03 0.68 9.38 127.69 1.20 1.88 16 4 C 0.12 2.85 4.70 38.71 0.18 3.03 16 5 C -0.16 -2.56 8.55 22.38 0.19 -2.37 16 6 C -0.08 -0.97 10.03 22.29 0.22 -0.75 16 7 C -0.12 -1.49 10.02 22.24 0.22 -1.27 16 8 C -0.09 -1.62 8.52 22.52 0.19 -1.43 16 9 C -0.13 -3.36 5.48 -19.98 -0.11 -3.46 16 10 C 0.57 19.35 7.18 86.67 0.62 19.98 16 11 O -0.56 -23.68 16.53 -4.04 -0.07 -23.75 16 12 N -0.61 -19.32 3.32 -815.19 -2.71 -22.03 16 13 C 0.11 2.58 5.58 86.73 0.48 3.07 16 14 C -0.15 -4.26 6.50 31.78 0.21 -4.05 16 15 C 0.17 6.51 3.56 46.46 0.17 6.67 16 16 H 0.07 2.85 7.96 -2.38 -0.02 2.83 16 17 N -0.61 -28.23 2.48 -694.57 -1.72 -29.95 16 18 C 0.10 4.23 8.00 127.77 1.02 5.25 16 19 C -0.27 -15.29 9.91 84.03 0.83 -14.46 16 20 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 21 C -0.02 -1.27 5.45 84.86 0.46 -0.81 16 22 N -0.96 -60.09 13.97 21.65 0.30 -59.79 16 23 Si 0.97 45.16 24.70 68.60 1.69 46.86 16 24 H -0.28 -12.34 6.70 99.48 0.67 -11.67 16 25 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 26 H -0.24 -10.09 7.02 99.48 0.70 -9.39 16 27 C 0.10 3.81 6.44 86.93 0.56 4.37 16 28 H 0.05 0.76 7.11 -2.39 -0.02 0.74 16 29 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 33 H 0.05 0.78 7.33 -2.38 -0.02 0.76 16 34 H 0.14 1.72 7.01 -2.91 -0.02 1.69 16 35 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.14 2.21 5.64 -2.91 -0.02 2.19 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 39 H 0.10 1.71 5.81 -2.39 -0.01 1.69 16 40 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.08 2.27 6.42 -2.39 -0.02 2.26 16 42 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 43 H 0.03 1.25 2.98 -2.39 -0.01 1.24 16 44 H 0.07 2.36 6.42 -2.38 -0.02 2.34 16 45 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.07 2.40 7.02 -2.39 -0.02 2.39 16 47 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 Total: -1.00 -76.71 365.41 3.26 -73.45 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.92 Total: 14.00 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 7.65 Total: 17.68 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -6.93 Total: -128.24 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.07 Total: -23.75 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.69 Total: 46.86 kcal Total: -76.71 3.26 -73.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980537775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.847 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds