Wall clock time and date at job start Tue Mar 31 2020 11:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 119.99867 * 2 1 4 4 H 1.07994 * 120.00274 * 159.71068 * 3 2 1 5 5 C 1.38808 * 119.99503 * 339.43038 * 3 2 1 6 6 N 1.31622 * 120.00219 * 345.02696 * 5 3 2 7 7 Si 1.86796 * 119.99945 * 165.03090 * 5 3 2 8 8 H 1.48500 * 109.47381 * 94.97336 * 7 5 3 9 9 H 1.48497 * 109.47377 * 214.97679 * 7 5 3 10 10 H 1.48507 * 109.46987 * 334.97187 * 7 5 3 11 11 C 1.46497 * 119.99992 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.64036 * 183.14749 * 11 2 1 13 13 C 1.55152 * 110.72039 * 60.00872 * 11 2 1 14 14 C 1.54913 * 101.58364 * 206.13449 * 13 11 2 15 15 N 1.47425 * 104.82982 * 37.00400 * 14 13 11 16 16 C 1.34776 * 125.64816 * 155.83302 * 15 14 13 17 17 O 1.21628 * 119.99741 * 4.68417 * 16 15 14 18 18 C 1.47258 * 120.00282 * 184.68502 * 16 15 14 19 19 C 1.46745 * 126.92297 * 353.59604 * 18 16 15 20 20 C 1.34067 * 106.31276 * 179.89040 * 19 18 16 21 21 N 1.37082 * 109.03809 * 0.41158 * 20 19 18 22 22 C 1.34581 * 109.95333 * 359.68774 * 21 20 19 23 23 C 1.47036 * 123.95324 * 179.61934 * 21 20 19 24 24 C 1.53143 * 108.83375 * 342.45414 * 23 21 20 25 25 C 1.53134 * 109.58747 * 51.22574 * 24 23 21 26 26 C 1.51087 * 126.73356 * 180.18937 * 20 19 18 27 27 C 1.47023 * 108.70727 * 335.87302 * 15 14 13 28 28 H 1.09004 * 109.47291 * 84.51165 * 1 2 3 29 29 H 1.09004 * 109.47214 * 204.50380 * 1 2 3 30 30 H 1.08998 * 109.47913 * 324.50760 * 1 2 3 31 31 H 0.97007 * 119.99710 * 180.02562 * 6 5 3 32 32 H 1.09007 * 111.00353 * 324.20200 * 13 11 2 33 33 H 1.08995 * 111.01250 * 88.01618 * 13 11 2 34 34 H 1.08991 * 110.36984 * 155.84411 * 14 13 11 35 35 H 1.09003 * 110.35950 * 278.06153 * 14 13 11 36 36 H 1.07998 * 126.84248 * 0.04327 * 19 18 16 37 37 H 1.07994 * 125.72772 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.57679 * 102.25531 * 23 21 20 39 39 H 1.08997 * 109.57935 * 222.51550 * 23 21 20 40 40 H 1.08994 * 109.45084 * 171.26225 * 24 23 21 41 41 H 1.08999 * 109.45221 * 291.19275 * 24 23 21 42 42 H 1.09006 * 109.52235 * 49.72778 * 25 24 23 43 43 H 1.08999 * 109.52519 * 169.85781 * 25 24 23 44 44 H 1.09004 * 109.71548 * 44.88768 * 26 20 19 45 45 H 1.08993 * 109.75679 * 284.26537 * 26 20 19 46 46 H 1.08998 * 109.88609 * 241.64718 * 27 15 14 47 47 H 1.08992 * 109.88013 * 120.47360 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1793 1.2151 0.3243 5 6 1.5219 2.3497 -0.4224 6 7 0.3906 2.2815 -1.0918 7 14 2.2825 4.0126 -0.0409 8 1 3.1042 4.4576 -1.1950 9 1 1.2056 5.0034 0.2114 10 1 3.1425 3.8986 1.1645 11 6 2.1975 -1.2687 0.0006 12 1 3.2716 -1.0922 0.0565 13 6 1.8437 -2.1074 -1.2559 14 6 2.1172 -3.5477 -0.7556 15 7 1.6778 -3.5482 0.6516 16 6 1.2934 -4.6323 1.3541 17 8 1.3716 -5.7390 0.8556 18 6 0.7787 -4.4769 2.7250 19 6 0.7407 -3.2426 3.5178 20 6 0.1912 -3.5688 4.6964 21 7 -0.1041 -4.9075 4.6969 22 6 0.2452 -5.4552 3.5182 23 6 -0.7118 -5.6139 5.8342 24 6 -0.5439 -4.7593 7.0939 25 6 -1.0420 -3.3375 6.8197 26 6 -0.0702 -2.6405 5.8593 27 6 1.7273 -2.1702 1.1616 28 1 -0.3634 0.0983 -1.0230 29 1 -0.3634 -0.9351 0.4262 30 1 -0.3635 0.8367 0.5966 31 1 -0.0479 3.0948 -1.3873 32 1 0.7957 -1.9807 -1.5279 33 1 2.4955 -1.8531 -2.0917 34 1 1.5376 -4.2668 -1.3343 35 1 3.1808 -3.7770 -0.8227 36 1 1.0844 -2.2656 3.2118 37 1 0.1249 -6.4931 3.2449 38 1 -1.7724 -5.7741 5.6402 39 1 -0.2168 -6.5750 5.9739 40 1 -1.1221 -5.1958 7.9082 41 1 0.5092 -4.7275 7.3732 42 1 -2.0332 -3.3794 6.3680 43 1 -1.0917 -2.7819 7.7562 44 1 -0.5132 -1.7128 5.4970 45 1 0.8651 -2.4241 6.3755 46 1 2.4332 -2.1064 1.9896 47 1 0.7357 -1.8615 1.4923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980573541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:05 Heat of formation + Delta-G solvation = 44.305895 kcal Electronic energy + Delta-G solvation = -27157.634291 eV Core-core repulsion = 23534.928570 eV Total energy + Delta-G solvation = -3622.705721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54807 -39.33444 -37.22273 -35.96247 -34.62440 -32.91915 -31.50222 -30.37134 -29.04708 -27.91157 -27.31591 -26.03019 -24.78724 -23.74808 -22.61241 -21.71026 -20.95261 -19.45243 -19.14913 -18.04464 -17.02458 -16.93532 -16.12177 -15.83387 -15.70460 -15.01728 -14.59219 -14.47034 -14.05756 -13.95669 -13.67621 -13.63249 -13.24155 -13.17823 -12.95904 -12.59309 -12.44494 -12.16548 -11.98780 -11.72392 -11.48768 -11.39913 -11.25271 -11.14702 -11.06497 -10.91684 -10.72387 -10.44723 -10.43029 -10.19124 -9.86572 -9.81475 -9.48790 -8.55664 -8.51581 -8.24792 -7.94203 -6.80350 -5.74021 -3.18295 1.93313 2.49638 2.70969 3.37623 3.44621 3.46345 3.54880 3.86534 4.18524 4.31941 4.41937 4.48268 4.62081 4.88662 4.97932 5.06029 5.10311 5.15592 5.28629 5.33730 5.42430 5.46134 5.51488 5.55428 5.58575 5.61534 5.77087 5.77367 5.86521 5.90549 6.00868 6.01511 6.10490 6.28021 6.35150 6.51765 6.68339 6.75493 6.84833 6.89306 6.97833 7.13858 7.26267 7.37339 7.73011 7.80574 8.03373 8.36361 8.66732 9.21150 9.84533 10.32680 11.30907 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003726 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.811321 B = 7512.399487 C = 9177.507494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.587 5.587 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.170 3.830 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.110 3.890 15 N -0.606 5.606 16 C 0.604 3.396 17 O -0.569 6.569 18 C -0.223 4.223 19 C -0.165 4.165 20 C 0.010 3.990 21 N -0.445 5.445 22 C 0.071 3.929 23 C 0.103 3.897 24 C -0.133 4.133 25 C -0.125 4.125 26 C -0.052 4.052 27 C 0.080 3.920 28 H 0.031 0.969 29 H 0.003 0.997 30 H 0.042 0.958 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 -13.520 15.582 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.308 5.308 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.013 4.013 15 N -0.339 5.339 16 C 0.395 3.605 17 O -0.451 6.451 18 C -0.234 4.234 19 C -0.188 4.188 20 C -0.097 4.097 21 N -0.122 5.122 22 C -0.064 4.064 23 C -0.018 4.018 24 C -0.171 4.171 25 C -0.163 4.163 26 C -0.090 4.090 27 C -0.045 4.045 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.176 0.824 37 H 0.188 0.812 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.854 -14.130 15.598 21.239 hybrid contribution 0.278 0.911 0.012 0.952 sum -2.576 -13.219 15.610 20.617 Atomic orbital electron populations 1.20795 0.82434 0.95520 0.99665 1.43898 1.01856 0.99881 1.85137 1.19237 0.97022 0.84816 1.37658 0.91126 1.24952 0.97822 0.98350 0.98400 1.70104 1.18931 1.26823 1.39105 0.86259 0.78176 0.84096 0.78111 1.21558 1.21641 1.20451 1.21342 0.96231 0.85936 0.90528 0.90396 1.23395 1.02752 0.92866 1.00182 1.22191 0.99059 0.98494 0.81581 1.48203 1.65089 1.07645 1.12933 1.17016 0.76624 0.82743 0.84100 1.90716 1.57815 1.24823 1.71722 1.20249 1.13254 0.94394 0.95462 1.22336 1.05097 0.98544 0.92863 1.20339 1.07257 0.83829 0.98302 1.43907 1.48074 1.07966 1.12279 1.21549 1.01255 0.98710 0.84877 1.22043 0.98886 0.95984 0.84919 1.21840 1.03042 0.95983 0.96219 1.21636 0.99406 0.95203 1.00012 1.20355 0.99925 0.96596 0.92121 1.23044 1.02009 0.80694 0.98755 0.95055 0.97869 0.93899 0.93763 0.90774 0.90522 0.91343 0.92052 0.82424 0.81212 0.90092 0.89434 0.89750 0.90720 0.91342 0.90636 0.89322 0.90173 0.91899 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.74 59.85 0.46 4.30 16 2 N -0.59 -14.06 2.94 -171.39 -0.50 -14.56 16 3 C -0.26 -6.81 9.63 -15.06 -0.15 -6.96 16 4 H 0.07 1.81 7.82 -52.49 -0.41 1.40 16 5 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 6 N -0.90 -25.78 10.68 55.49 0.59 -25.19 16 7 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 8 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 C 0.17 3.37 3.45 -66.10 -0.23 3.14 16 12 H 0.08 1.53 7.91 -51.93 -0.41 1.11 16 13 C -0.15 -2.77 6.66 -24.58 -0.16 -2.93 16 14 C 0.11 1.86 6.89 -2.53 -0.02 1.84 16 15 N -0.61 -10.89 3.33 -171.85 -0.57 -11.46 16 16 C 0.60 11.28 7.83 -12.59 -0.10 11.18 16 17 O -0.57 -11.92 17.21 5.25 0.09 -11.83 16 18 C -0.22 -3.63 6.22 -103.32 -0.64 -4.27 16 19 C -0.16 -2.45 9.30 -37.61 -0.35 -2.80 16 20 C 0.01 0.12 6.53 -81.52 -0.53 -0.41 16 21 N -0.44 -5.05 3.11 -111.87 -0.35 -5.39 16 22 C 0.07 0.96 11.19 -16.87 -0.19 0.77 16 23 C 0.10 0.73 6.89 -3.68 -0.03 0.71 16 24 C -0.13 -0.78 5.91 -26.59 -0.16 -0.94 16 25 C -0.12 -0.86 5.96 -26.46 -0.16 -1.02 16 26 C -0.05 -0.48 6.26 -27.50 -0.17 -0.65 16 27 C 0.08 1.42 4.52 -3.06 -0.01 1.40 16 28 H 0.03 0.82 7.37 -51.93 -0.38 0.44 16 29 H 0.00 0.06 6.17 -51.93 -0.32 -0.26 16 30 H 0.04 1.10 7.25 -51.93 -0.38 0.72 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.07 1.47 7.34 -51.93 -0.38 1.09 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.16 2.39 4.85 -52.49 -0.25 2.13 16 37 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 42 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 1.06 7.07 -51.93 -0.37 0.69 16 47 H 0.08 1.48 4.66 -51.93 -0.24 1.23 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -32.29 364.47 -10.14 -42.43 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.35 Total: 0.89 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.52 Total: 3.37 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.83 Total: -56.61 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.29 -10.14 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980573541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.738 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds