Wall clock time and date at job start Tue Mar 31 2020 11:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 119.99867 * 2 1 4 4 H 1.07994 * 120.00274 * 159.71068 * 3 2 1 5 5 C 1.38808 * 119.99503 * 339.43038 * 3 2 1 6 6 N 1.31622 * 120.00219 * 345.02696 * 5 3 2 7 7 Si 1.86796 * 119.99945 * 165.03090 * 5 3 2 8 8 H 1.48500 * 109.47381 * 94.97336 * 7 5 3 9 9 H 1.48497 * 109.47377 * 214.97679 * 7 5 3 10 10 H 1.48507 * 109.46987 * 334.97187 * 7 5 3 11 11 C 1.46497 * 119.99992 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.64036 * 183.14749 * 11 2 1 13 13 C 1.55152 * 110.72039 * 60.00872 * 11 2 1 14 14 C 1.54913 * 101.58364 * 206.13449 * 13 11 2 15 15 N 1.47425 * 104.82982 * 37.00400 * 14 13 11 16 16 C 1.34776 * 125.64816 * 155.83302 * 15 14 13 17 17 O 1.21628 * 119.99741 * 4.68417 * 16 15 14 18 18 C 1.47258 * 120.00282 * 184.68502 * 16 15 14 19 19 C 1.46745 * 126.92297 * 353.59604 * 18 16 15 20 20 C 1.34067 * 106.31276 * 179.89040 * 19 18 16 21 21 N 1.37082 * 109.03809 * 0.41158 * 20 19 18 22 22 C 1.34581 * 109.95333 * 359.68774 * 21 20 19 23 23 C 1.47036 * 123.95324 * 179.61934 * 21 20 19 24 24 C 1.53143 * 108.83375 * 342.45414 * 23 21 20 25 25 C 1.53134 * 109.58747 * 51.22574 * 24 23 21 26 26 C 1.51087 * 126.73356 * 180.18937 * 20 19 18 27 27 C 1.47023 * 108.70727 * 335.87302 * 15 14 13 28 28 H 1.09004 * 109.47291 * 84.51165 * 1 2 3 29 29 H 1.09004 * 109.47214 * 204.50380 * 1 2 3 30 30 H 1.08998 * 109.47913 * 324.50760 * 1 2 3 31 31 H 0.97007 * 119.99710 * 180.02562 * 6 5 3 32 32 H 1.09007 * 111.00353 * 324.20200 * 13 11 2 33 33 H 1.08995 * 111.01250 * 88.01618 * 13 11 2 34 34 H 1.08991 * 110.36984 * 155.84411 * 14 13 11 35 35 H 1.09003 * 110.35950 * 278.06153 * 14 13 11 36 36 H 1.07998 * 126.84248 * 0.04327 * 19 18 16 37 37 H 1.07994 * 125.72772 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.57679 * 102.25531 * 23 21 20 39 39 H 1.08997 * 109.57935 * 222.51550 * 23 21 20 40 40 H 1.08994 * 109.45084 * 171.26225 * 24 23 21 41 41 H 1.08999 * 109.45221 * 291.19275 * 24 23 21 42 42 H 1.09006 * 109.52235 * 49.72778 * 25 24 23 43 43 H 1.08999 * 109.52519 * 169.85781 * 25 24 23 44 44 H 1.09004 * 109.71548 * 44.88768 * 26 20 19 45 45 H 1.08993 * 109.75679 * 284.26537 * 26 20 19 46 46 H 1.08998 * 109.88609 * 241.64718 * 27 15 14 47 47 H 1.08992 * 109.88013 * 120.47360 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1793 1.2151 0.3243 5 6 1.5219 2.3497 -0.4224 6 7 0.3906 2.2815 -1.0918 7 14 2.2825 4.0126 -0.0409 8 1 3.1042 4.4576 -1.1950 9 1 1.2056 5.0034 0.2114 10 1 3.1425 3.8986 1.1645 11 6 2.1975 -1.2687 0.0006 12 1 3.2716 -1.0922 0.0565 13 6 1.8437 -2.1074 -1.2559 14 6 2.1172 -3.5477 -0.7556 15 7 1.6778 -3.5482 0.6516 16 6 1.2934 -4.6323 1.3541 17 8 1.3716 -5.7390 0.8556 18 6 0.7787 -4.4769 2.7250 19 6 0.7407 -3.2426 3.5178 20 6 0.1912 -3.5688 4.6964 21 7 -0.1041 -4.9075 4.6969 22 6 0.2452 -5.4552 3.5182 23 6 -0.7118 -5.6139 5.8342 24 6 -0.5439 -4.7593 7.0939 25 6 -1.0420 -3.3375 6.8197 26 6 -0.0702 -2.6405 5.8593 27 6 1.7273 -2.1702 1.1616 28 1 -0.3634 0.0983 -1.0230 29 1 -0.3634 -0.9351 0.4262 30 1 -0.3635 0.8367 0.5966 31 1 -0.0479 3.0948 -1.3873 32 1 0.7957 -1.9807 -1.5279 33 1 2.4955 -1.8531 -2.0917 34 1 1.5376 -4.2668 -1.3343 35 1 3.1808 -3.7770 -0.8227 36 1 1.0844 -2.2656 3.2118 37 1 0.1249 -6.4931 3.2449 38 1 -1.7724 -5.7741 5.6402 39 1 -0.2168 -6.5750 5.9739 40 1 -1.1221 -5.1958 7.9082 41 1 0.5092 -4.7275 7.3732 42 1 -2.0332 -3.3794 6.3680 43 1 -1.0917 -2.7819 7.7562 44 1 -0.5132 -1.7128 5.4970 45 1 0.8651 -2.4241 6.3755 46 1 2.4332 -2.1064 1.9896 47 1 0.7357 -1.8615 1.4923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980573541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:04 Heat of formation + Delta-G solvation = 26.450090 kcal Electronic energy + Delta-G solvation = -27158.408576 eV Core-core repulsion = 23534.928570 eV Total energy + Delta-G solvation = -3623.480007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.51727 -40.76391 -38.78479 -36.68421 -36.43110 -33.79454 -33.29292 -31.79862 -30.18305 -29.37831 -28.28706 -28.03520 -25.85663 -25.05856 -24.12593 -22.51688 -22.20235 -20.97619 -20.36465 -19.06812 -18.89821 -18.03689 -17.45043 -17.29542 -16.62721 -16.51387 -16.04305 -15.58517 -15.10925 -15.04666 -14.89136 -14.71365 -14.46671 -14.40720 -14.35405 -14.17192 -13.94766 -13.40261 -13.29193 -12.98191 -12.86771 -12.79951 -12.51436 -12.42752 -12.32362 -12.12185 -12.01030 -11.93634 -11.78108 -11.75902 -11.71087 -11.48142 -10.96822 -10.59102 -9.69873 -9.48087 -9.06024 -8.79595 -7.79701 -5.25914 0.76036 1.44971 1.50894 1.52545 1.62029 1.81627 2.19534 2.52416 2.57428 3.33220 3.50126 3.61647 3.75120 3.81013 3.83349 3.89322 3.94875 4.13348 4.22635 4.29732 4.36579 4.40132 4.43862 4.48450 4.52114 4.58550 4.68911 4.79319 4.87019 4.90933 4.93133 4.95007 5.01510 5.07006 5.10104 5.16815 5.20190 5.30631 5.32960 5.38405 5.45576 5.68174 5.74049 5.80431 6.11183 6.33127 6.36108 6.60609 7.16727 7.24513 7.87561 8.32190 9.24192 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003726 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.811321 B = 7512.399487 C = 9177.507494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.599 5.599 3 C -0.263 4.263 4 H 0.078 0.922 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.967 3.033 8 H -0.289 1.289 9 H -0.296 1.296 10 H -0.267 1.267 11 C 0.163 3.837 12 H 0.084 0.916 13 C -0.141 4.141 14 C 0.115 3.885 15 N -0.610 5.610 16 C 0.599 3.401 17 O -0.599 6.599 18 C -0.262 4.262 19 C -0.192 4.192 20 C 0.018 3.982 21 N -0.437 5.437 22 C 0.079 3.921 23 C 0.092 3.908 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.055 4.055 27 C 0.100 3.900 28 H 0.003 0.997 29 H 0.024 0.976 30 H 0.018 0.982 31 H 0.247 0.753 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.186 0.814 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 -14.500 18.186 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.320 5.320 3 C -0.393 4.393 4 H 0.096 0.904 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.216 1.216 9 H -0.223 1.223 10 H -0.192 1.192 11 C 0.055 3.945 12 H 0.102 0.898 13 C -0.181 4.181 14 C -0.008 4.008 15 N -0.342 5.342 16 C 0.392 3.608 17 O -0.484 6.484 18 C -0.272 4.272 19 C -0.215 4.215 20 C -0.091 4.091 21 N -0.112 5.112 22 C -0.058 4.058 23 C -0.027 4.027 24 C -0.166 4.166 25 C -0.160 4.160 26 C -0.093 4.093 27 C -0.025 4.025 28 H 0.021 0.979 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.165 0.835 37 H 0.203 0.797 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.554 -15.133 18.237 23.835 hybrid contribution 0.178 1.128 -0.732 1.357 sum -2.375 -14.005 17.504 22.543 Atomic orbital electron populations 1.20445 0.82856 0.95477 0.97553 1.44030 1.01834 1.00834 1.85311 1.19609 0.97365 0.85797 1.36519 0.90419 1.25699 0.98504 1.01583 0.98782 1.70269 1.20426 1.27142 1.40614 0.85255 0.77187 0.79886 0.78082 1.21577 1.22252 1.19164 1.21518 0.96172 0.84853 0.91995 0.89802 1.23229 1.01695 0.93502 0.99685 1.22183 1.00084 0.97324 0.81196 1.48261 1.65177 1.07554 1.13225 1.17427 0.76097 0.82255 0.84989 1.90680 1.59305 1.25703 1.72663 1.20247 1.15888 0.96053 0.95023 1.22278 1.07204 0.97914 0.94141 1.20748 1.05295 0.84730 0.98286 1.44236 1.46657 1.07756 1.12578 1.21772 0.99939 0.98912 0.85197 1.22485 0.99671 0.96732 0.83844 1.21869 1.03385 0.95117 0.96233 1.21649 0.98328 0.95951 1.00068 1.20494 1.01176 0.96005 0.91623 1.22752 1.01588 0.80234 0.97906 0.97873 0.95745 0.96295 0.94380 0.92639 0.89751 0.91311 0.90330 0.83532 0.79722 0.88629 0.87432 0.86851 0.90991 0.91710 0.88710 0.89727 0.89236 0.90810 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.95 7.74 127.77 0.99 9.94 16 2 N -0.60 -28.99 2.94 -696.17 -2.05 -31.03 16 3 C -0.26 -13.91 9.63 84.03 0.81 -13.10 16 4 H 0.08 3.93 7.82 -2.91 -0.02 3.90 16 5 C -0.05 -2.76 5.07 84.86 0.43 -2.33 16 6 N -0.94 -54.71 10.68 21.65 0.23 -54.48 16 7 Si 0.97 44.00 29.58 68.60 2.03 46.03 16 8 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 9 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 C 0.16 6.45 3.45 46.18 0.16 6.61 16 12 H 0.08 3.22 7.91 -2.39 -0.02 3.20 16 13 C -0.14 -5.14 6.66 31.99 0.21 -4.93 16 14 C 0.11 3.84 6.89 86.86 0.60 4.44 16 15 N -0.61 -21.91 3.33 -815.86 -2.71 -24.63 16 16 C 0.60 22.50 7.83 86.61 0.68 23.18 16 17 O -0.60 -25.23 17.21 -4.12 -0.07 -25.30 16 18 C -0.26 -8.48 6.22 -19.02 -0.12 -8.59 16 19 C -0.19 -5.70 9.30 23.54 0.22 -5.48 16 20 C 0.02 0.42 6.53 40.91 0.27 0.69 16 21 N -0.44 -9.00 3.11 -507.83 -1.58 -10.58 16 22 C 0.08 2.04 11.19 83.93 0.94 2.98 16 23 C 0.09 1.00 6.89 86.32 0.59 1.59 16 24 C -0.13 -1.02 5.91 30.69 0.18 -0.84 16 25 C -0.12 -1.30 5.96 30.77 0.18 -1.11 16 26 C -0.06 -0.92 6.26 30.10 0.19 -0.73 16 27 C 0.10 3.54 4.52 86.73 0.39 3.94 16 28 H 0.00 0.16 7.37 -2.39 -0.02 0.15 16 29 H 0.02 1.07 6.17 -2.39 -0.01 1.06 16 30 H 0.02 0.99 7.25 -2.39 -0.02 0.97 16 31 H 0.25 14.07 8.31 -92.70 -0.77 13.29 16 32 H 0.05 2.24 7.34 -2.38 -0.02 2.22 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.07 2.31 8.08 -2.39 -0.02 2.29 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.15 4.53 4.85 -2.91 -0.01 4.52 16 37 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.07 0.66 8.11 -2.39 -0.02 0.64 16 42 H 0.06 0.76 8.12 -2.38 -0.02 0.74 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 2.47 7.07 -2.39 -0.02 2.45 16 47 H 0.07 2.61 4.66 -2.39 -0.01 2.59 16 Total: -1.00 -70.65 364.47 3.54 -67.11 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.96 Total: 16.63 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.72 Total: 16.25 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -6.11 Total: -120.72 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.07 Total: -25.30 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -70.65 3.54 -67.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980573541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.559 kcal (2) G-P(sol) polarization free energy of solvation -70.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds