Wall clock time and date at job start Tue Mar 31 2020 11:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99975 * 2 1 4 4 N 1.46495 * 109.47112 * 124.20422 * 3 2 1 5 5 C 1.35540 * 125.67707 * 262.17083 * 4 3 2 6 6 C 1.35459 * 108.86786 * 180.02562 * 5 4 3 7 7 C 1.39827 * 107.86555 * 359.73686 * 6 5 4 8 8 C 1.37651 * 125.68024 * 82.19495 * 4 3 2 9 9 C 1.46683 * 126.23045 * 359.97438 * 8 4 3 10 10 O 1.21690 * 119.99846 * 332.73519 * 9 8 4 11 11 N 1.34768 * 119.99814 * 152.73607 * 9 8 4 12 12 C 1.46932 * 120.63117 * 171.17680 * 11 9 8 13 13 C 1.53187 * 108.77301 * 126.37023 * 12 11 9 14 14 C 1.53041 * 109.31450 * 54.64005 * 13 12 11 15 15 N 1.46503 * 109.44810 * 178.62080 * 14 13 12 16 16 C 1.46500 * 120.00024 * 60.06309 * 15 14 13 17 17 C 1.36942 * 119.99630 * 240.05914 * 15 14 13 18 18 H 1.07994 * 120.00129 * 27.11799 * 17 15 14 19 19 C 1.38817 * 119.99835 * 207.11509 * 17 15 14 20 20 N 1.31624 * 119.99901 * 357.92843 * 19 17 15 21 21 Si 1.86792 * 119.99800 * 177.92699 * 19 17 15 22 22 H 1.48507 * 109.46859 * 90.00303 * 21 19 17 23 23 H 1.48501 * 109.47029 * 209.99680 * 21 19 17 24 24 H 1.48491 * 109.47582 * 330.00111 * 21 19 17 25 25 C 1.53038 * 109.53722 * 298.63142 * 14 13 12 26 26 C 1.46927 * 120.63612 * 351.15733 * 11 9 8 27 27 H 1.08003 * 119.99705 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99804 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99658 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47036 * 4.20797 * 3 2 1 31 31 H 1.08993 * 109.47265 * 244.20342 * 3 2 1 32 32 H 1.07998 * 125.56715 * 0.04054 * 5 4 3 33 33 H 1.08002 * 126.06075 * 179.97438 * 6 5 4 34 34 H 1.07999 * 126.46072 * 180.26266 * 7 6 5 35 35 H 1.08992 * 109.59224 * 246.15939 * 12 11 9 36 36 H 1.08999 * 109.58289 * 6.58690 * 12 11 9 37 37 H 1.09005 * 109.49981 * 174.58954 * 13 12 11 38 38 H 1.09002 * 109.50047 * 294.68737 * 13 12 11 39 39 H 1.08990 * 109.46081 * 58.65265 * 14 13 12 40 40 H 1.09002 * 109.47191 * 94.35048 * 16 15 14 41 41 H 1.09008 * 109.46934 * 214.34601 * 16 15 14 42 42 H 1.08999 * 109.47046 * 334.34394 * 16 15 14 43 43 H 0.96999 * 119.99655 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.49773 * 301.41484 * 25 14 13 45 45 H 1.09000 * 109.52386 * 181.33259 * 25 14 13 46 46 H 1.09002 * 109.58319 * 353.41980 * 26 11 9 47 47 H 1.09007 * 109.58706 * 113.69796 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9801 1.3398 1.1423 5 6 2.7398 1.9461 2.3305 6 6 3.8128 1.7682 3.1379 7 6 4.7597 1.0179 2.4340 8 6 4.2289 0.7625 1.1874 9 6 4.8746 0.0077 0.1081 10 8 4.1963 -0.5797 -0.7138 11 7 6.2192 -0.0352 0.0268 12 6 6.8833 -0.9368 -0.9245 13 6 7.8508 -0.1190 -1.7856 14 6 8.8102 0.6520 -0.8760 15 7 9.7580 1.4095 -1.6970 16 6 9.2682 2.4236 -2.6340 17 6 11.1019 1.1697 -1.5884 18 1 11.4534 0.1980 -1.2744 19 6 12.0124 2.1756 -1.8821 20 7 11.5855 3.3470 -2.3039 21 14 13.8433 1.8666 -1.6784 22 1 14.3996 1.3340 -2.9482 23 1 14.5250 3.1405 -1.3352 24 1 14.0609 0.8799 -0.5903 25 6 8.0147 1.6171 0.0060 26 6 7.0490 0.8190 0.8874 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3576 2.1322 0.0754 31 1 2.6325 1.3962 -0.9252 32 1 1.8398 2.4831 2.5910 33 1 3.9166 2.1370 4.1477 34 1 5.7261 0.7006 2.7972 35 1 7.4365 -1.7009 -0.3786 36 1 6.1363 -1.4093 -1.5624 37 1 8.4200 -0.7892 -2.4299 38 1 7.2870 0.5840 -2.3988 39 1 9.3559 -0.0500 -0.2456 40 1 9.2877 3.4018 -2.1535 41 1 9.9061 2.4401 -3.5177 42 1 8.2464 2.1833 -2.9279 43 1 12.2217 4.0500 -2.5088 44 1 7.4493 2.3037 -0.6241 45 1 8.7001 2.1830 0.6369 46 1 6.4113 1.5050 1.4450 47 1 7.6138 0.1982 1.5829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985473700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:24 Heat of formation + Delta-G solvation = 74.103682 kcal Electronic energy + Delta-G solvation = -27197.126437 eV Core-core repulsion = 23575.712845 eV Total energy + Delta-G solvation = -3621.413592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58383 -39.45802 -37.35559 -35.56543 -34.90946 -32.35150 -31.52217 -30.96861 -29.85663 -28.82335 -26.28081 -25.97085 -25.05060 -23.01112 -22.62486 -21.21574 -20.80874 -20.38227 -19.33303 -18.58699 -17.27981 -16.75876 -16.35484 -15.72725 -15.48571 -15.07267 -14.96266 -14.46040 -14.04011 -13.84866 -13.72435 -13.37372 -13.30586 -13.26846 -12.95289 -12.67852 -12.59588 -12.20665 -12.19316 -11.92894 -11.56974 -11.48789 -11.32689 -10.92580 -10.82601 -10.75082 -10.29123 -10.22827 -10.10235 -9.89851 -9.83980 -9.77144 -9.55503 -8.80070 -8.53891 -8.46179 -8.17131 -6.67876 -5.71346 -3.19873 1.48145 1.82316 2.61433 2.72330 3.31120 3.37680 3.38692 3.44590 3.45808 4.44529 4.48564 4.56525 4.61751 4.89269 5.02451 5.20332 5.22475 5.30541 5.32944 5.37577 5.40750 5.50508 5.52314 5.61573 5.72454 5.74968 5.95100 6.00160 6.05278 6.10278 6.22633 6.30366 6.32091 6.34360 6.44061 6.53973 6.62546 6.76937 6.87269 6.91678 7.02786 7.04422 7.12320 7.49964 7.55241 7.79275 7.86067 8.25536 8.45340 9.28196 9.89633 10.41128 11.33192 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002969 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.448303 B = 9428.950055 C = 9793.318063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C 0.133 3.867 4 N -0.408 5.408 5 C 0.010 3.990 6 C -0.207 4.207 7 C -0.147 4.147 8 C -0.040 4.040 9 C 0.585 3.415 10 O -0.554 6.554 11 N -0.592 5.592 12 C 0.118 3.882 13 C -0.146 4.146 14 C 0.180 3.820 15 N -0.599 5.599 16 C 0.167 3.833 17 C -0.254 4.254 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.909 5.909 21 Si 0.903 3.097 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C -0.144 4.144 26 C 0.092 3.908 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.024 0.976 41 H 0.047 0.953 42 H -0.008 1.008 43 H 0.252 0.748 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.416 -3.908 8.847 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.176 4.176 3 C 0.013 3.987 4 N -0.081 5.081 5 C -0.124 4.124 6 C -0.231 4.231 7 C -0.173 4.173 8 C -0.154 4.154 9 C 0.374 3.626 10 O -0.434 6.434 11 N -0.324 5.324 12 C -0.005 4.005 13 C -0.186 4.186 14 C 0.071 3.929 15 N -0.320 5.320 16 C 0.023 3.977 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.554 5.554 21 Si 0.733 3.267 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.184 4.184 26 C -0.031 4.031 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.065 0.935 42 H 0.010 0.990 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.841 -4.061 8.004 21.777 hybrid contribution 1.093 0.084 0.105 1.101 sum -18.749 -3.977 8.109 20.811 Atomic orbital electron populations 1.23876 0.95518 1.02130 1.00409 1.23200 0.95841 0.98833 0.99676 1.21007 0.92098 0.96932 0.88706 1.43954 1.12438 1.39548 1.12168 1.21952 1.01437 1.03429 0.85569 1.20828 0.94844 1.06729 1.00700 1.21544 1.00371 1.02488 0.92860 1.20142 0.88276 1.09172 0.97802 1.17034 0.82097 0.80315 0.83113 1.90766 1.63329 1.47414 1.41929 1.47824 1.04472 1.40987 1.39071 1.21678 0.95701 0.91710 0.91364 1.22476 0.97607 0.99536 0.99025 1.20299 0.89483 0.92295 0.90813 1.43917 1.02080 1.43367 1.42669 1.20780 0.92356 0.91280 0.93306 1.19205 0.81663 0.95368 1.42160 0.91554 1.25191 0.98237 0.95221 1.00654 1.70072 1.32625 1.03625 1.49040 0.86277 0.85490 0.76961 0.77947 1.21561 1.21656 1.20496 1.22487 0.97685 0.99238 0.99000 1.22402 0.93866 0.93687 0.93128 0.88530 0.87901 0.85832 0.88869 0.88078 0.81756 0.84060 0.83247 0.91548 0.89582 0.90884 0.92039 0.91926 0.95768 0.93454 0.98964 0.93786 0.92321 0.90546 0.88447 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 14.32 29.01 0.42 -1.04 16 2 C -0.16 -1.64 9.37 -36.03 -0.34 -1.97 16 3 C 0.13 1.38 5.80 -5.19 -0.03 1.35 16 4 N -0.41 -4.84 2.75 -114.15 -0.31 -5.16 16 5 C 0.01 0.10 11.36 -16.91 -0.19 -0.09 16 6 C -0.21 -2.16 10.81 -39.98 -0.43 -2.59 16 7 C -0.15 -1.76 8.44 -39.12 -0.33 -2.09 16 8 C -0.04 -0.55 6.33 -81.98 -0.52 -1.07 16 9 C 0.59 9.13 7.44 -12.86 -0.10 9.03 16 10 O -0.55 -9.68 13.95 5.20 0.07 -9.61 16 11 N -0.59 -8.85 2.97 -174.31 -0.52 -9.37 16 12 C 0.12 1.77 6.44 -3.71 -0.02 1.75 16 13 C -0.15 -2.55 5.32 -26.61 -0.14 -2.69 16 14 C 0.18 3.54 2.55 -67.89 -0.17 3.36 16 15 N -0.60 -14.74 2.81 -173.43 -0.49 -15.23 16 16 C 0.17 4.17 8.01 59.85 0.48 4.64 16 17 C -0.25 -6.88 9.56 -15.06 -0.14 -7.02 16 18 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 19 C 0.01 0.14 5.35 -17.43 -0.09 0.05 16 20 N -0.91 -26.31 10.29 55.49 0.57 -25.74 16 21 Si 0.90 21.65 29.55 -169.99 -5.02 16.62 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.14 -2.53 5.34 -26.61 -0.14 -2.67 16 26 C 0.09 1.28 5.08 -3.71 -0.02 1.26 16 27 H 0.10 0.60 7.84 -52.48 -0.41 0.19 16 28 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 29 H 0.12 1.59 7.23 -52.49 -0.38 1.21 16 30 H 0.09 0.69 7.76 -51.93 -0.40 0.29 16 31 H 0.10 1.20 7.57 -51.93 -0.39 0.81 16 32 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.15 1.60 6.39 -52.49 -0.34 1.26 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.16 6.72 -51.93 -0.35 0.81 16 39 H 0.06 1.23 7.89 -51.93 -0.41 0.82 16 40 H 0.02 0.65 7.42 -51.93 -0.39 0.26 16 41 H 0.05 1.28 7.14 -51.92 -0.37 0.91 16 42 H -0.01 -0.18 6.46 -51.93 -0.34 -0.52 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.10 1.26 4.35 -51.93 -0.23 1.04 16 47 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -31.45 369.55 -9.18 -40.63 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.27 Total: 2.07 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.78 Total: 0.20 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.75 Total: -55.49 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.07 Total: -9.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.45 -9.18 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985473700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.732 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds