Wall clock time and date at job start Tue Mar 31 2020 11:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99975 * 2 1 4 4 N 1.46495 * 109.47112 * 124.20422 * 3 2 1 5 5 C 1.35540 * 125.67707 * 262.17083 * 4 3 2 6 6 C 1.35459 * 108.86786 * 180.02562 * 5 4 3 7 7 C 1.39827 * 107.86555 * 359.73686 * 6 5 4 8 8 C 1.37651 * 125.68024 * 82.19495 * 4 3 2 9 9 C 1.46683 * 126.23045 * 359.97438 * 8 4 3 10 10 O 1.21690 * 119.99846 * 332.73519 * 9 8 4 11 11 N 1.34768 * 119.99814 * 152.73607 * 9 8 4 12 12 C 1.46932 * 120.63117 * 171.17680 * 11 9 8 13 13 C 1.53187 * 108.77301 * 126.37023 * 12 11 9 14 14 C 1.53041 * 109.31450 * 54.64005 * 13 12 11 15 15 N 1.46503 * 109.44810 * 178.62080 * 14 13 12 16 16 C 1.46500 * 120.00024 * 60.06309 * 15 14 13 17 17 C 1.36942 * 119.99630 * 240.05914 * 15 14 13 18 18 H 1.07994 * 120.00129 * 27.11799 * 17 15 14 19 19 C 1.38817 * 119.99835 * 207.11509 * 17 15 14 20 20 N 1.31624 * 119.99901 * 357.92843 * 19 17 15 21 21 Si 1.86792 * 119.99800 * 177.92699 * 19 17 15 22 22 H 1.48507 * 109.46859 * 90.00303 * 21 19 17 23 23 H 1.48501 * 109.47029 * 209.99680 * 21 19 17 24 24 H 1.48491 * 109.47582 * 330.00111 * 21 19 17 25 25 C 1.53038 * 109.53722 * 298.63142 * 14 13 12 26 26 C 1.46927 * 120.63612 * 351.15733 * 11 9 8 27 27 H 1.08003 * 119.99705 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99804 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99658 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47036 * 4.20797 * 3 2 1 31 31 H 1.08993 * 109.47265 * 244.20342 * 3 2 1 32 32 H 1.07998 * 125.56715 * 0.04054 * 5 4 3 33 33 H 1.08002 * 126.06075 * 179.97438 * 6 5 4 34 34 H 1.07999 * 126.46072 * 180.26266 * 7 6 5 35 35 H 1.08992 * 109.59224 * 246.15939 * 12 11 9 36 36 H 1.08999 * 109.58289 * 6.58690 * 12 11 9 37 37 H 1.09005 * 109.49981 * 174.58954 * 13 12 11 38 38 H 1.09002 * 109.50047 * 294.68737 * 13 12 11 39 39 H 1.08990 * 109.46081 * 58.65265 * 14 13 12 40 40 H 1.09002 * 109.47191 * 94.35048 * 16 15 14 41 41 H 1.09008 * 109.46934 * 214.34601 * 16 15 14 42 42 H 1.08999 * 109.47046 * 334.34394 * 16 15 14 43 43 H 0.96999 * 119.99655 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.49773 * 301.41484 * 25 14 13 45 45 H 1.09000 * 109.52386 * 181.33259 * 25 14 13 46 46 H 1.09002 * 109.58319 * 353.41980 * 26 11 9 47 47 H 1.09007 * 109.58706 * 113.69796 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9801 1.3398 1.1423 5 6 2.7398 1.9461 2.3305 6 6 3.8128 1.7682 3.1379 7 6 4.7597 1.0179 2.4340 8 6 4.2289 0.7625 1.1874 9 6 4.8746 0.0077 0.1081 10 8 4.1963 -0.5797 -0.7138 11 7 6.2192 -0.0352 0.0268 12 6 6.8833 -0.9368 -0.9245 13 6 7.8508 -0.1190 -1.7856 14 6 8.8102 0.6520 -0.8760 15 7 9.7580 1.4095 -1.6970 16 6 9.2682 2.4236 -2.6340 17 6 11.1019 1.1697 -1.5884 18 1 11.4534 0.1980 -1.2744 19 6 12.0124 2.1756 -1.8821 20 7 11.5855 3.3470 -2.3039 21 14 13.8433 1.8666 -1.6784 22 1 14.3996 1.3340 -2.9482 23 1 14.5250 3.1405 -1.3352 24 1 14.0609 0.8799 -0.5903 25 6 8.0147 1.6171 0.0060 26 6 7.0490 0.8190 0.8874 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3576 2.1322 0.0754 31 1 2.6325 1.3962 -0.9252 32 1 1.8398 2.4831 2.5910 33 1 3.9166 2.1370 4.1477 34 1 5.7261 0.7006 2.7972 35 1 7.4365 -1.7009 -0.3786 36 1 6.1363 -1.4093 -1.5624 37 1 8.4200 -0.7892 -2.4299 38 1 7.2870 0.5840 -2.3988 39 1 9.3559 -0.0500 -0.2456 40 1 9.2877 3.4018 -2.1535 41 1 9.9061 2.4401 -3.5177 42 1 8.2464 2.1833 -2.9279 43 1 12.2217 4.0500 -2.5088 44 1 7.4493 2.3037 -0.6241 45 1 8.7001 2.1830 0.6369 46 1 6.4113 1.5050 1.4450 47 1 7.6138 0.1982 1.5829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985473700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:24 Heat of formation + Delta-G solvation = 57.244107 kcal Electronic energy + Delta-G solvation = -27197.857523 eV Core-core repulsion = 23575.712845 eV Total energy + Delta-G solvation = -3622.144678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48110 -40.65841 -38.80598 -36.82372 -36.07583 -34.01122 -32.60252 -32.05916 -31.53279 -29.90306 -28.04235 -27.06886 -26.48965 -24.36964 -24.13943 -22.50849 -21.73673 -21.16071 -20.61919 -19.69157 -18.79960 -18.29734 -17.53799 -16.98051 -16.67677 -16.46317 -15.99847 -15.70451 -15.31093 -15.12483 -15.10102 -14.85180 -14.57521 -14.49763 -14.04272 -13.94342 -13.69281 -13.47852 -13.30912 -13.18419 -12.97887 -12.79555 -12.67573 -12.57344 -12.35249 -12.19831 -12.18104 -12.05873 -11.83439 -11.58647 -11.26323 -10.96387 -10.58873 -10.53750 -9.73479 -9.62536 -9.08171 -8.70116 -7.81206 -5.31711 0.53234 1.10114 1.48197 1.48710 1.58044 1.67307 1.88539 2.30615 2.35891 2.51717 3.33245 3.51019 3.66314 3.74337 3.88318 3.91022 4.13072 4.18031 4.22129 4.27216 4.32486 4.38005 4.49659 4.53309 4.59253 4.59853 4.73518 4.82079 4.82448 4.92125 4.95014 5.00645 5.06647 5.19053 5.26787 5.30654 5.39524 5.49940 5.57819 5.58999 5.66286 5.68739 5.74575 5.90369 6.04396 6.33911 6.37758 6.40960 7.09404 7.18987 7.89687 8.36833 9.22511 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002969 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.448303 B = 9428.950055 C = 9793.318063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.186 4.186 3 C 0.134 3.866 4 N -0.414 5.414 5 C 0.023 3.977 6 C -0.218 4.218 7 C -0.145 4.145 8 C -0.081 4.081 9 C 0.582 3.418 10 O -0.582 6.582 11 N -0.595 5.595 12 C 0.126 3.874 13 C -0.133 4.133 14 C 0.175 3.825 15 N -0.614 5.614 16 C 0.188 3.812 17 C -0.261 4.261 18 H 0.073 0.927 19 C -0.052 4.052 20 N -0.941 5.941 21 Si 0.969 3.031 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.266 1.266 25 C -0.132 4.132 26 C 0.105 3.895 27 H 0.123 0.877 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.202 0.798 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.067 0.933 40 H -0.001 1.001 41 H 0.017 0.983 42 H 0.012 0.988 43 H 0.247 0.753 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.014 -4.249 11.090 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.204 4.204 3 C 0.014 3.986 4 N -0.088 5.088 5 C -0.112 4.112 6 C -0.241 4.241 7 C -0.171 4.171 8 C -0.193 4.193 9 C 0.372 3.628 10 O -0.464 6.464 11 N -0.327 5.327 12 C 0.003 3.997 13 C -0.173 4.173 14 C 0.068 3.932 15 N -0.337 5.337 16 C 0.043 3.957 17 C -0.391 4.391 18 H 0.091 0.909 19 C -0.246 4.246 20 N -0.588 5.588 21 Si 0.798 3.202 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.190 1.190 25 C -0.173 4.173 26 C -0.018 4.018 27 H 0.141 0.859 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.219 0.781 33 H 0.183 0.817 34 H 0.177 0.823 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.017 0.983 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.130 0.870 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.455 -4.437 10.269 24.196 hybrid contribution 1.449 0.163 -0.582 1.570 sum -20.005 -4.274 9.686 22.634 Atomic orbital electron populations 1.24123 0.94520 1.03751 0.96681 1.22972 0.96636 0.97639 1.03200 1.21067 0.92069 0.98076 0.87403 1.44180 1.12050 1.39412 1.13118 1.22645 1.02377 1.01792 0.84355 1.21191 0.94525 1.06533 1.01833 1.21801 1.01047 1.01957 0.92314 1.20029 0.89835 1.11465 0.98010 1.17388 0.82020 0.80047 0.83302 1.90745 1.63836 1.48604 1.43247 1.47861 1.04620 1.41053 1.39136 1.21575 0.95092 0.91645 0.91381 1.22280 0.97286 0.99034 0.98683 1.20512 0.89294 0.92374 0.90992 1.44147 1.02385 1.43519 1.43603 1.20405 0.92665 0.90557 0.92061 1.19569 0.82927 0.95582 1.41054 0.90924 1.25951 1.02455 0.95184 1.01049 1.70254 1.33595 1.04423 1.50481 0.85238 0.80347 0.76664 0.78000 1.21532 1.22211 1.19044 1.22284 0.97678 0.98653 0.98650 1.22369 0.93250 0.93811 0.92327 0.85879 0.87138 0.89232 0.85453 0.90704 0.78125 0.81683 0.82284 0.89361 0.89991 0.91231 0.93888 0.91456 0.98300 0.96409 0.96957 0.94410 0.94267 0.91735 0.87002 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 14.32 67.77 0.97 -1.12 16 2 C -0.19 -3.76 9.37 25.64 0.24 -3.52 16 3 C 0.13 2.64 5.80 85.63 0.50 3.14 16 4 N -0.41 -9.22 2.75 -515.07 -1.41 -10.63 16 5 C 0.02 0.39 11.36 83.48 0.95 1.34 16 6 C -0.22 -3.87 10.81 22.01 0.24 -3.63 16 7 C -0.14 -3.18 8.44 22.57 0.19 -2.99 16 8 C -0.08 -2.14 6.33 40.35 0.26 -1.89 16 9 C 0.58 18.19 7.44 86.45 0.64 18.83 16 10 O -0.58 -20.98 13.95 -4.32 -0.06 -21.04 16 11 N -0.60 -17.45 2.97 -823.62 -2.45 -19.89 16 12 C 0.13 3.70 6.44 86.36 0.56 4.25 16 13 C -0.13 -4.64 5.32 30.67 0.16 -4.48 16 14 C 0.18 6.87 2.55 45.02 0.11 6.99 16 15 N -0.61 -30.73 2.81 -702.62 -1.98 -32.71 16 16 C 0.19 9.72 8.01 127.77 1.02 10.74 16 17 C -0.26 -14.21 9.56 84.03 0.80 -13.41 16 18 H 0.07 3.79 7.82 -2.91 -0.02 3.77 16 19 C -0.05 -2.89 5.35 84.86 0.45 -2.44 16 20 N -0.94 -55.99 10.29 21.65 0.22 -55.77 16 21 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C -0.13 -4.64 5.34 30.67 0.16 -4.47 16 26 C 0.10 2.78 5.08 86.36 0.44 3.22 16 27 H 0.12 1.04 7.84 -2.91 -0.02 1.02 16 28 H 0.11 1.33 8.06 -2.91 -0.02 1.30 16 29 H 0.09 2.42 7.23 -2.91 -0.02 2.40 16 30 H 0.13 1.52 7.76 -2.39 -0.02 1.50 16 31 H 0.07 1.83 7.57 -2.39 -0.02 1.82 16 32 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.16 3.02 6.39 -2.91 -0.02 3.00 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.52 7.00 -2.39 -0.02 2.50 16 37 H 0.07 2.46 8.14 -2.38 -0.02 2.45 16 38 H 0.04 1.65 6.72 -2.39 -0.02 1.63 16 39 H 0.07 2.58 7.89 -2.39 -0.02 2.56 16 40 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 41 H 0.02 0.98 7.14 -2.38 -0.02 0.97 16 42 H 0.01 0.56 6.46 -2.39 -0.02 0.55 16 43 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.04 1.51 7.72 -2.39 -0.02 1.49 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.11 2.72 4.35 -2.39 -0.01 2.71 16 47 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -70.64 369.55 5.00 -65.64 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.95 Total: 16.97 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 7.70 Total: 10.55 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -5.62 Total: -119.01 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.04 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.64 5.00 -65.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985473700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.884 kcal (2) G-P(sol) polarization free energy of solvation -70.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds