Wall clock time and date at job start Tue Mar 31 2020 11:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00194 * 2 1 4 4 H 1.07999 * 120.00205 * 202.99609 * 3 2 1 5 5 C 1.38813 * 119.99826 * 22.99151 * 3 2 1 6 6 N 1.31618 * 120.00140 * 11.64309 * 5 3 2 7 7 Si 1.86800 * 119.99926 * 191.63760 * 5 3 2 8 8 H 1.48506 * 109.47068 * 60.00408 * 7 5 3 9 9 H 1.48510 * 109.47054 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47326 * 299.99980 * 7 5 3 11 11 C 1.46504 * 120.00006 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.45998 * 300.00052 * 11 2 1 13 13 C 1.53193 * 109.31256 * 181.38523 * 12 11 2 14 14 N 1.46925 * 108.89319 * 305.29045 * 13 12 11 15 15 C 1.34770 * 120.63278 * 233.67998 * 14 13 12 16 16 O 1.21277 * 120.00064 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00233 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47274 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46956 * 179.97438 * 18 17 15 20 20 C 1.38644 * 120.78914 * 269.71484 * 19 18 17 21 21 C 1.38208 * 119.16182 * 179.80217 * 20 19 18 22 22 N 1.31876 * 120.76288 * 0.48801 * 21 20 19 23 23 C 1.31865 * 121.72407 * 359.74020 * 22 21 20 24 24 C 1.38204 * 120.76694 * 0.02830 * 23 22 21 25 25 C 1.47208 * 118.55234 * 53.54295 * 14 13 12 26 26 C 1.53038 * 109.46038 * 60.06654 * 11 2 1 27 27 H 1.09000 * 109.47021 * 273.84552 * 1 2 3 28 28 H 1.08997 * 109.47556 * 33.84790 * 1 2 3 29 29 H 1.09002 * 109.47075 * 153.85016 * 1 2 3 30 30 H 0.96998 * 120.00485 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.45119 * 180.02562 * 11 2 1 32 32 H 1.09004 * 109.49913 * 61.43114 * 12 11 2 33 33 H 1.08997 * 109.52143 * 301.35247 * 12 11 2 34 34 H 1.09005 * 109.58329 * 65.15207 * 13 12 11 35 35 H 1.09000 * 109.58499 * 185.43587 * 13 12 11 36 36 H 1.09003 * 109.46847 * 300.00015 * 17 15 14 37 37 H 1.08999 * 109.46983 * 60.00002 * 17 15 14 38 38 H 1.08997 * 109.47434 * 299.99995 * 18 17 15 39 39 H 1.08999 * 109.47201 * 60.00030 * 18 17 15 40 40 H 1.07996 * 120.42305 * 0.02562 * 20 19 18 41 41 H 1.08007 * 119.62097 * 180.21148 * 21 20 19 42 42 H 1.08003 * 119.61491 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.41785 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.53475 * 186.67411 * 25 14 13 45 45 H 1.08994 * 109.67896 * 66.36792 * 25 14 13 46 46 H 1.09005 * 109.50110 * 298.56493 * 26 11 2 47 47 H 1.09001 * 109.49725 * 58.66222 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1653 1.2230 -0.3654 5 6 1.5383 2.3402 0.4696 6 7 0.3979 2.2623 1.1220 7 14 2.3343 4.0044 0.1757 8 1 2.4683 4.2381 -1.2848 9 1 1.4884 5.0699 0.7713 10 1 3.6785 4.0285 0.8062 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0716 1.2487 13 6 2.6212 -3.3819 1.2623 14 7 2.3853 -4.0941 -0.0009 15 6 1.9584 -5.3724 0.0008 16 8 1.7649 -5.9457 1.0519 17 6 1.7216 -6.0896 -1.3032 18 6 1.2441 -7.5156 -1.0217 19 6 1.0067 -8.2325 -2.3258 20 6 -0.2363 -8.1971 -2.9390 21 6 -0.4155 -8.8632 -4.1367 22 7 0.5757 -9.5340 -4.6904 23 6 1.7694 -9.5931 -4.1333 24 6 2.0244 -8.9480 -2.9379 25 6 2.6225 -3.3800 -1.2661 26 6 1.8289 -2.0698 -1.2514 27 1 -0.3633 0.0689 1.0254 28 1 -0.3634 0.8534 -0.5724 29 1 -0.3633 -0.9225 -0.4529 30 1 -0.0295 3.0689 1.4498 31 1 3.2691 -1.0692 0.0000 32 1 0.7603 -2.2928 1.2363 33 1 2.0684 -1.4911 2.1393 34 1 3.6842 -3.1641 1.3662 35 1 2.2916 -4.0001 2.0974 36 1 0.9616 -5.5589 -1.8768 37 1 2.6500 -6.1228 -1.8734 38 1 2.0037 -8.0465 -0.4479 39 1 0.3157 -7.4820 -0.4517 40 1 -1.0531 -7.6530 -2.4884 41 1 -1.3798 -8.8377 -4.6226 42 1 2.5567 -10.1528 -4.6163 43 1 3.0041 -9.0005 -2.4864 44 1 2.2920 -3.9980 -2.1010 45 1 3.6853 -3.1623 -1.3711 46 1 0.7616 -2.2910 -1.2404 47 1 2.0710 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985512736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:47 Heat of formation + Delta-G solvation = 15.279006 kcal Electronic energy + Delta-G solvation = -26249.750912 eV Core-core repulsion = 22625.786491 eV Total energy + Delta-G solvation = -3623.964422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57147 -39.98322 -37.63947 -35.15694 -34.98382 -32.31112 -31.49571 -31.38596 -30.35774 -29.66298 -26.06535 -25.91157 -24.50208 -23.75544 -22.86849 -22.24332 -21.54842 -19.74511 -18.49387 -17.43656 -16.79820 -16.75403 -16.45313 -15.90064 -15.74157 -15.55544 -15.04433 -14.26679 -14.13070 -13.98872 -13.86308 -13.77964 -13.49320 -13.30911 -12.87781 -12.78288 -12.45314 -12.29470 -12.12567 -12.01402 -11.73547 -11.48094 -11.25470 -10.96724 -10.88076 -10.79357 -10.42103 -10.28513 -10.18191 -9.95038 -9.87178 -9.78099 -9.68161 -9.56436 -9.46017 -8.59191 -8.48786 -6.77330 -5.74105 -3.20788 0.83112 0.92807 2.64663 3.05663 3.36418 3.42123 3.42606 3.52020 4.15898 4.21406 4.43759 4.45914 4.64965 4.76577 4.82205 4.84138 4.89563 5.01620 5.21113 5.24297 5.34389 5.35927 5.39288 5.42432 5.47583 5.55340 5.60178 5.69920 5.75926 5.82961 5.86821 5.99738 6.08960 6.12858 6.22166 6.33810 6.40501 6.50198 6.58233 6.76692 6.94766 6.98070 7.37314 7.49380 7.67453 7.71461 7.78369 8.20420 8.38305 9.21956 9.85319 10.34805 11.30652 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.002397 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.434672 B =11677.561643 C =12116.055201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.180 3.820 12 C -0.144 4.144 13 C 0.113 3.887 14 N -0.606 5.606 15 C 0.514 3.486 16 O -0.550 6.550 17 C -0.133 4.133 18 C -0.068 4.068 19 C -0.036 4.036 20 C -0.169 4.169 21 C 0.099 3.901 22 N -0.492 5.492 23 C 0.098 3.902 24 C -0.171 4.171 25 C 0.109 3.891 26 C -0.148 4.148 27 H 0.027 0.973 28 H 0.042 0.958 29 H -0.004 1.004 30 H 0.253 0.747 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.135 0.865 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -20.438 -8.254 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.010 4.010 14 N -0.339 5.339 15 C 0.302 3.698 16 O -0.429 6.429 17 C -0.173 4.173 18 C -0.106 4.106 19 C -0.044 4.044 20 C -0.189 4.189 21 C -0.057 4.057 22 N -0.201 5.201 23 C -0.059 4.059 24 C -0.190 4.190 25 C -0.014 4.014 26 C -0.188 4.188 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.154 0.846 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.153 0.847 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.229 -20.985 -8.411 22.717 hybrid contribution 0.452 1.604 0.657 1.791 sum 2.681 -19.381 -7.754 21.046 Atomic orbital electron populations 1.20734 0.82769 0.95387 0.99106 1.43944 1.01774 1.00162 1.85883 1.19167 0.98261 0.85549 1.35574 0.91515 1.25038 0.97802 0.98538 0.98278 1.70054 1.18479 1.27285 1.39433 0.86337 0.78499 0.83835 0.77836 1.21120 1.21666 1.20962 1.20274 0.95984 0.86067 0.90571 1.22498 0.99957 0.94428 1.01556 1.21696 0.99780 0.93779 0.85747 1.48258 1.65702 1.11738 1.08160 1.20506 0.76589 0.81579 0.91122 1.90679 1.52384 1.66237 1.33588 1.21640 1.03673 0.95641 0.96355 1.20395 1.03859 0.93495 0.92811 1.20385 0.93296 0.94739 0.95948 1.22133 0.97960 1.01546 0.97272 1.22788 0.97912 0.92497 0.92546 1.67683 1.00727 1.17556 1.34138 1.22767 0.94254 0.96274 0.92558 1.22102 1.00238 0.99359 0.97343 1.21871 1.00477 0.94190 0.84863 1.22485 1.00133 0.94731 1.01501 0.95489 0.93918 0.98521 0.93702 0.91944 0.92286 0.90630 0.91796 0.89690 0.88630 0.88806 0.89652 0.89582 0.84628 0.82750 0.82826 0.84742 0.90465 0.91279 0.91936 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 8.03 59.85 0.48 4.45 16 2 N -0.60 -14.29 2.81 -173.44 -0.49 -14.78 16 3 C -0.26 -6.81 9.59 -15.06 -0.14 -6.95 16 4 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 5 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 6 N -0.91 -26.13 10.64 55.49 0.59 -25.53 16 7 Si 0.90 21.48 29.57 -169.99 -5.03 16.45 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.18 3.40 2.55 -67.89 -0.17 3.22 16 12 C -0.14 -2.55 5.34 -26.61 -0.14 -2.69 16 13 C 0.11 1.67 6.42 -3.71 -0.02 1.65 16 14 N -0.61 -8.11 2.98 -172.54 -0.51 -8.63 16 15 C 0.51 6.79 7.70 -10.99 -0.08 6.71 16 16 O -0.55 -9.10 15.39 5.56 0.09 -9.01 16 17 C -0.13 -1.23 4.04 -27.89 -0.11 -1.34 16 18 C -0.07 -0.61 4.68 -27.88 -0.13 -0.74 16 19 C -0.04 -0.30 5.17 -104.32 -0.54 -0.84 16 20 C -0.17 -1.37 9.82 -39.44 -0.39 -1.76 16 21 C 0.10 0.85 11.18 -17.54 -0.20 0.65 16 22 N -0.49 -4.91 10.36 -13.25 -0.14 -5.05 16 23 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 24 C -0.17 -1.32 9.82 -39.44 -0.39 -1.70 16 25 C 0.11 1.28 6.35 -3.56 -0.02 1.26 16 26 C -0.15 -2.27 5.32 -26.61 -0.14 -2.41 16 27 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 28 H 0.04 1.11 7.22 -51.93 -0.37 0.74 16 29 H 0.00 -0.08 6.46 -51.93 -0.34 -0.41 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.06 1.19 7.86 -51.93 -0.41 0.79 16 32 H 0.06 1.12 7.72 -51.93 -0.40 0.72 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.33 7.00 -51.93 -0.36 0.96 16 36 H 0.10 0.81 7.70 -51.93 -0.40 0.41 16 37 H 0.09 0.72 7.96 -51.93 -0.41 0.30 16 38 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 39 H 0.09 0.83 8.06 -51.93 -0.42 0.42 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.08 0.71 5.97 -51.93 -0.31 0.40 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -32.17 374.48 -9.64 -41.81 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.50 Total: -0.98 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.29 Total: 0.07 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.55 Total: -53.99 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.17 -9.64 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985512736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.093 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds