Wall clock time and date at job start Tue Mar 31 2020 11:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00194 * 2 1 4 4 H 1.07999 * 120.00205 * 202.99609 * 3 2 1 5 5 C 1.38813 * 119.99826 * 22.99151 * 3 2 1 6 6 N 1.31618 * 120.00140 * 11.64309 * 5 3 2 7 7 Si 1.86800 * 119.99926 * 191.63760 * 5 3 2 8 8 H 1.48506 * 109.47068 * 60.00408 * 7 5 3 9 9 H 1.48510 * 109.47054 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47326 * 299.99980 * 7 5 3 11 11 C 1.46504 * 120.00006 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.45998 * 300.00052 * 11 2 1 13 13 C 1.53193 * 109.31256 * 181.38523 * 12 11 2 14 14 N 1.46925 * 108.89319 * 305.29045 * 13 12 11 15 15 C 1.34770 * 120.63278 * 233.67998 * 14 13 12 16 16 O 1.21277 * 120.00064 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00233 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47274 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46956 * 179.97438 * 18 17 15 20 20 C 1.38644 * 120.78914 * 269.71484 * 19 18 17 21 21 C 1.38208 * 119.16182 * 179.80217 * 20 19 18 22 22 N 1.31876 * 120.76288 * 0.48801 * 21 20 19 23 23 C 1.31865 * 121.72407 * 359.74020 * 22 21 20 24 24 C 1.38204 * 120.76694 * 0.02830 * 23 22 21 25 25 C 1.47208 * 118.55234 * 53.54295 * 14 13 12 26 26 C 1.53038 * 109.46038 * 60.06654 * 11 2 1 27 27 H 1.09000 * 109.47021 * 273.84552 * 1 2 3 28 28 H 1.08997 * 109.47556 * 33.84790 * 1 2 3 29 29 H 1.09002 * 109.47075 * 153.85016 * 1 2 3 30 30 H 0.96998 * 120.00485 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.45119 * 180.02562 * 11 2 1 32 32 H 1.09004 * 109.49913 * 61.43114 * 12 11 2 33 33 H 1.08997 * 109.52143 * 301.35247 * 12 11 2 34 34 H 1.09005 * 109.58329 * 65.15207 * 13 12 11 35 35 H 1.09000 * 109.58499 * 185.43587 * 13 12 11 36 36 H 1.09003 * 109.46847 * 300.00015 * 17 15 14 37 37 H 1.08999 * 109.46983 * 60.00002 * 17 15 14 38 38 H 1.08997 * 109.47434 * 299.99995 * 18 17 15 39 39 H 1.08999 * 109.47201 * 60.00030 * 18 17 15 40 40 H 1.07996 * 120.42305 * 0.02562 * 20 19 18 41 41 H 1.08007 * 119.62097 * 180.21148 * 21 20 19 42 42 H 1.08003 * 119.61491 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.41785 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.53475 * 186.67411 * 25 14 13 45 45 H 1.08994 * 109.67896 * 66.36792 * 25 14 13 46 46 H 1.09005 * 109.50110 * 298.56493 * 26 11 2 47 47 H 1.09001 * 109.49725 * 58.66222 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1653 1.2230 -0.3654 5 6 1.5383 2.3402 0.4696 6 7 0.3979 2.2623 1.1220 7 14 2.3343 4.0044 0.1757 8 1 2.4683 4.2381 -1.2848 9 1 1.4884 5.0699 0.7713 10 1 3.6785 4.0285 0.8062 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0716 1.2487 13 6 2.6212 -3.3819 1.2623 14 7 2.3853 -4.0941 -0.0009 15 6 1.9584 -5.3724 0.0008 16 8 1.7649 -5.9457 1.0519 17 6 1.7216 -6.0896 -1.3032 18 6 1.2441 -7.5156 -1.0217 19 6 1.0067 -8.2325 -2.3258 20 6 -0.2363 -8.1971 -2.9390 21 6 -0.4155 -8.8632 -4.1367 22 7 0.5757 -9.5340 -4.6904 23 6 1.7694 -9.5931 -4.1333 24 6 2.0244 -8.9480 -2.9379 25 6 2.6225 -3.3800 -1.2661 26 6 1.8289 -2.0698 -1.2514 27 1 -0.3633 0.0689 1.0254 28 1 -0.3634 0.8534 -0.5724 29 1 -0.3633 -0.9225 -0.4529 30 1 -0.0295 3.0689 1.4498 31 1 3.2691 -1.0692 0.0000 32 1 0.7603 -2.2928 1.2363 33 1 2.0684 -1.4911 2.1393 34 1 3.6842 -3.1641 1.3662 35 1 2.2916 -4.0001 2.0974 36 1 0.9616 -5.5589 -1.8768 37 1 2.6500 -6.1228 -1.8734 38 1 2.0037 -8.0465 -0.4479 39 1 0.3157 -7.4820 -0.4517 40 1 -1.0531 -7.6530 -2.4884 41 1 -1.3798 -8.8377 -4.6226 42 1 2.5567 -10.1528 -4.6163 43 1 3.0041 -9.0005 -2.4864 44 1 2.2920 -3.9980 -2.1010 45 1 3.6853 -3.1623 -1.3711 46 1 0.7616 -2.2910 -1.2404 47 1 2.0710 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985512736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:46 Heat of formation + Delta-G solvation = -3.027365 kcal Electronic energy + Delta-G solvation = -26250.544736 eV Core-core repulsion = 22625.786491 eV Total energy + Delta-G solvation = -3624.758245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37509 -40.87750 -39.00355 -36.69794 -35.76169 -33.94800 -32.51189 -32.05916 -31.53205 -31.06653 -28.03462 -26.98247 -25.76238 -24.32866 -24.06688 -23.66550 -22.41999 -21.05113 -19.68493 -18.75514 -18.35837 -17.41580 -17.24541 -16.95445 -16.80823 -16.49060 -16.37448 -15.73393 -15.18681 -15.11974 -14.95618 -14.89426 -14.57046 -14.49644 -14.16231 -13.97475 -13.58667 -13.47107 -13.19061 -13.01602 -12.99105 -12.76555 -12.63295 -12.59851 -12.34169 -12.22781 -12.07700 -11.91172 -11.81746 -11.59931 -11.23507 -10.86826 -10.59670 -10.43295 -10.37038 -10.02845 -9.64610 -8.75504 -7.80617 -5.29000 0.26326 0.31747 1.47475 1.49404 1.55785 1.63738 2.03946 2.51824 2.91704 3.32804 3.40560 3.62953 3.66390 3.85063 3.86807 3.90859 4.09717 4.15108 4.21680 4.24951 4.26511 4.31280 4.36245 4.40799 4.57737 4.59376 4.74500 4.78642 4.81913 4.84624 4.85295 4.92738 4.98823 5.00912 5.09466 5.12354 5.16695 5.25788 5.38236 5.48809 5.51104 5.61099 5.67710 5.72820 5.84720 6.35014 6.46624 7.09053 7.17095 7.17696 7.90317 8.34807 9.22530 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.002397 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.434672 B =11677.561643 C =12116.055201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.612 5.612 3 C -0.259 4.259 4 H 0.075 0.925 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.968 3.032 8 H -0.277 1.277 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.173 3.827 12 C -0.132 4.132 13 C 0.123 3.877 14 N -0.608 5.608 15 C 0.511 3.489 16 O -0.588 6.588 17 C -0.124 4.124 18 C -0.060 4.060 19 C -0.042 4.042 20 C -0.174 4.174 21 C 0.087 3.913 22 N -0.520 5.520 23 C 0.088 3.912 24 C -0.169 4.169 25 C 0.116 3.884 26 C -0.138 4.138 27 H -0.005 1.005 28 H 0.015 0.985 29 H 0.026 0.974 30 H 0.246 0.754 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.171 0.829 42 H 0.175 0.825 43 H 0.155 0.845 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.053 0.947 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 -21.782 -10.213 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.389 4.389 4 H 0.092 0.908 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.797 3.203 8 H -0.203 1.203 9 H -0.226 1.226 10 H -0.201 1.201 11 C 0.066 3.934 12 C -0.172 4.172 13 C -0.001 4.001 14 N -0.341 5.341 15 C 0.302 3.698 16 O -0.469 6.469 17 C -0.164 4.164 18 C -0.098 4.098 19 C -0.050 4.050 20 C -0.193 4.193 21 C -0.069 4.069 22 N -0.230 5.230 23 C -0.068 4.068 24 C -0.189 4.189 25 C -0.006 4.006 26 C -0.177 4.177 27 H 0.013 0.987 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.192 0.808 43 H 0.172 0.828 44 H 0.132 0.868 45 H 0.106 0.894 46 H 0.072 0.928 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.915 -22.362 -10.403 24.972 hybrid contribution -0.053 1.947 1.283 2.332 sum 3.862 -20.416 -9.119 22.691 Atomic orbital electron populations 1.20393 0.83355 0.95518 0.96895 1.44199 1.01780 1.01456 1.85979 1.19561 0.98511 0.86665 1.34185 0.90775 1.25818 0.98595 1.01972 0.98807 1.70238 1.20058 1.27497 1.41119 0.85321 0.77606 0.79539 0.77841 1.20315 1.22551 1.20098 1.20540 0.95456 0.84662 0.92739 1.22282 0.99276 0.95673 0.99978 1.21450 0.99943 0.91942 0.86734 1.48342 1.65695 1.12019 1.08026 1.21215 0.75284 0.81266 0.92084 1.90669 1.53794 1.67035 1.35421 1.21662 1.05380 0.95167 0.94166 1.20274 1.03129 0.93498 0.92920 1.20385 0.93728 0.95176 0.95682 1.22302 0.98358 1.01507 0.97157 1.23108 0.98456 0.92408 0.92890 1.67696 1.01657 1.18439 1.35163 1.23166 0.94309 0.96430 0.92913 1.22316 1.00955 0.98587 0.97012 1.21974 1.01067 0.92544 0.85059 1.22304 1.00186 0.96108 0.99142 0.98706 0.96663 0.95578 0.94489 0.91916 0.94068 0.93205 0.90208 0.90691 0.87202 0.86158 0.90057 0.90818 0.83471 0.81176 0.80832 0.82775 0.86776 0.89356 0.92843 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 8.03 127.77 1.03 10.07 16 2 N -0.61 -29.49 2.81 -702.63 -1.97 -31.46 16 3 C -0.26 -13.79 9.59 84.03 0.81 -12.98 16 4 H 0.07 3.76 7.82 -2.91 -0.02 3.74 16 5 C -0.06 -3.18 5.12 84.86 0.43 -2.74 16 6 N -0.94 -55.91 10.64 21.65 0.23 -55.68 16 7 Si 0.97 44.51 29.57 68.60 2.03 46.54 16 8 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 C 0.17 6.37 2.55 45.02 0.11 6.48 16 12 C -0.13 -4.68 5.34 30.67 0.16 -4.52 16 13 C 0.12 3.50 6.42 86.36 0.55 4.05 16 14 N -0.61 -14.65 2.98 -818.20 -2.44 -17.10 16 15 C 0.51 12.24 7.70 87.66 0.68 12.91 16 16 O -0.59 -18.78 15.39 -3.02 -0.05 -18.82 16 17 C -0.12 -1.84 4.04 29.85 0.12 -1.72 16 18 C -0.06 -0.94 4.68 29.85 0.14 -0.80 16 19 C -0.04 -0.59 5.17 -19.67 -0.10 -0.69 16 20 C -0.17 -2.46 9.82 22.36 0.22 -2.24 16 21 C 0.09 1.35 11.18 84.68 0.95 2.30 16 22 N -0.52 -9.53 10.36 -195.83 -2.03 -11.56 16 23 C 0.09 1.26 11.18 84.68 0.95 2.21 16 24 C -0.17 -2.14 9.82 22.36 0.22 -1.92 16 25 C 0.12 2.24 6.35 86.31 0.55 2.79 16 26 C -0.14 -3.85 5.32 30.67 0.16 -3.69 16 27 H -0.01 -0.30 7.42 -2.39 -0.02 -0.32 16 28 H 0.01 0.80 7.22 -2.39 -0.02 0.78 16 29 H 0.03 1.10 6.46 -2.39 -0.02 1.08 16 30 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.06 2.30 7.86 -2.39 -0.02 2.28 16 32 H 0.04 1.59 7.72 -2.38 -0.02 1.57 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.07 2.32 7.00 -2.39 -0.02 2.30 16 36 H 0.11 1.39 7.70 -2.39 -0.02 1.37 16 37 H 0.12 1.21 7.96 -2.39 -0.02 1.19 16 38 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 39 H 0.07 1.33 8.06 -2.39 -0.02 1.31 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.11 1.46 5.97 -2.39 -0.01 1.44 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 1.60 6.72 -2.38 -0.02 1.58 16 47 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -71.62 374.48 3.69 -67.93 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.95 Total: 10.65 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.98 Total: 9.51 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -6.22 Total: -115.81 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.62 3.69 -67.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985512736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.901 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds