Wall clock time and date at job start Tue Mar 31 2020 11:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99336 * 2 1 4 4 H 1.08000 * 119.99984 * 202.99023 * 3 2 1 5 5 C 1.38813 * 120.00246 * 22.99833 * 3 2 1 6 6 N 1.31616 * 120.00314 * 11.63763 * 5 3 2 7 7 Si 1.86800 * 119.99973 * 191.64575 * 5 3 2 8 8 H 1.48503 * 109.47065 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47578 * 119.99508 * 7 5 3 10 10 H 1.48499 * 109.46893 * 239.99791 * 7 5 3 11 11 C 1.46493 * 120.00237 * 180.02562 * 2 1 3 12 12 C 1.53047 * 109.45996 * 300.00017 * 11 2 1 13 13 C 1.53189 * 109.30966 * 181.38801 * 12 11 2 14 14 N 1.46928 * 108.77887 * 305.36064 * 13 12 11 15 15 C 1.34774 * 120.63641 * 233.58905 * 14 13 12 16 16 O 1.21286 * 119.99638 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00060 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.46765 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.46805 * 180.02562 * 18 17 15 20 20 C 1.38666 * 120.41770 * 270.25530 * 19 18 17 21 21 C 1.38626 * 118.41902 * 180.22073 * 20 19 18 22 22 C 1.38227 * 119.16174 * 359.48422 * 21 20 19 23 23 N 1.31848 * 120.75940 * 0.29946 * 22 21 20 24 24 C 1.31878 * 121.73023 * 359.97438 * 23 22 21 25 25 C 1.46932 * 118.73395 * 53.86132 * 14 13 12 26 26 C 1.53046 * 109.46041 * 60.06661 * 11 2 1 27 27 H 1.08998 * 109.47109 * 273.83842 * 1 2 3 28 28 H 1.08992 * 109.47365 * 33.84246 * 1 2 3 29 29 H 1.09009 * 109.46746 * 153.84491 * 1 2 3 30 30 H 0.96996 * 120.00286 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.44671 * 180.02562 * 11 2 1 32 32 H 1.08991 * 109.49852 * 61.43353 * 12 11 2 33 33 H 1.09004 * 109.52198 * 301.35065 * 12 11 2 34 34 H 1.09005 * 109.58611 * 185.57996 * 13 12 11 35 35 H 1.08995 * 109.71019 * 65.21965 * 13 12 11 36 36 H 1.08998 * 109.47346 * 60.00265 * 17 15 14 37 37 H 1.08996 * 109.47474 * 300.00213 * 17 15 14 38 38 H 1.08998 * 109.47139 * 59.99934 * 18 17 15 39 39 H 1.08996 * 109.47350 * 299.99711 * 18 17 15 40 40 H 1.08003 * 120.79418 * 359.97438 * 20 19 18 41 41 H 1.08004 * 120.42265 * 179.75887 * 21 20 19 42 42 H 1.08003 * 119.61904 * 180.27681 * 22 21 20 43 43 H 1.08009 * 119.61668 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.58515 * 65.93342 * 25 14 13 45 45 H 1.08999 * 109.58432 * 186.35524 * 25 14 13 46 46 H 1.08995 * 109.49527 * 298.56333 * 26 11 2 47 47 H 1.09003 * 109.49329 * 58.66386 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1653 1.2232 -0.3653 5 6 1.5382 2.3403 0.4697 6 7 0.3978 2.2623 1.1221 7 14 2.3339 4.0046 0.1755 8 1 3.6015 3.8213 -0.5761 9 1 1.4114 4.8624 -0.6107 10 1 2.6219 4.6530 1.4801 11 6 2.1976 -1.2686 -0.0006 12 6 1.8277 -2.0715 1.2488 13 6 2.6214 -3.3817 1.2623 14 7 2.3852 -4.0909 -0.0025 15 6 1.9591 -5.3696 -0.0037 16 8 1.7666 -5.9456 1.0461 17 6 1.7208 -6.0831 -1.3095 18 6 1.2447 -7.5103 -1.0312 19 6 1.0070 -8.2242 -2.3370 20 6 -0.2367 -8.1740 -2.9483 21 6 -0.4107 -8.8495 -4.1463 22 6 0.6566 -9.5368 -4.6932 23 7 1.8268 -9.5591 -4.0859 24 6 2.0270 -8.9326 -2.9429 25 6 2.6281 -3.3816 -1.2662 26 6 1.8290 -2.0697 -1.2515 27 1 -0.3633 0.0688 1.0253 28 1 -0.3634 0.8535 -0.5723 29 1 -0.3633 -0.9225 -0.4530 30 1 -0.0296 3.0689 1.4500 31 1 3.2691 -1.0690 0.0000 32 1 0.7606 -2.2928 1.2363 33 1 2.0686 -1.4910 2.1394 34 1 2.2901 -4.0011 2.0959 35 1 3.6847 -3.1662 1.3673 36 1 2.6483 -6.1142 -1.8812 37 1 0.9597 -5.5515 -1.8805 38 1 0.3171 -7.4789 -0.4597 39 1 2.0055 -8.0423 -0.4600 40 1 -1.0515 -7.6250 -2.4998 41 1 -1.3669 -8.8353 -4.6482 42 1 0.5305 -10.0619 -5.6285 43 1 2.9997 -8.9732 -2.4752 44 1 3.6916 -3.1639 -1.3644 45 1 2.3011 -4.0009 -2.1014 46 1 0.7618 -2.2910 -1.2403 47 1 2.0712 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985523008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:43 Heat of formation + Delta-G solvation = 15.375523 kcal Electronic energy + Delta-G solvation = -26262.104251 eV Core-core repulsion = 22638.144015 eV Total energy + Delta-G solvation = -3623.960236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58727 -39.97206 -37.61254 -35.10564 -34.80025 -32.43793 -32.20272 -31.13169 -30.08230 -29.53511 -26.04017 -25.76254 -24.45812 -23.86309 -22.86746 -22.24267 -21.52549 -19.71875 -18.47804 -17.48827 -17.06405 -16.78451 -16.74468 -15.82313 -15.52893 -15.23166 -15.02623 -14.27926 -14.00574 -13.92415 -13.85909 -13.59561 -13.36821 -13.30402 -13.19445 -12.84055 -12.57960 -12.28540 -12.09384 -11.85693 -11.71309 -11.48879 -11.29081 -10.96243 -10.88327 -10.81442 -10.41395 -10.24277 -10.16636 -10.09670 -9.87951 -9.78629 -9.71285 -9.58530 -9.23296 -8.59228 -8.46994 -6.77047 -5.74147 -3.20688 0.78120 0.96781 2.67332 3.08264 3.35416 3.42697 3.44447 3.50814 4.11767 4.34497 4.46014 4.50420 4.65609 4.68962 4.72574 4.85951 4.93605 5.04227 5.19898 5.23814 5.31429 5.36461 5.40390 5.45468 5.48658 5.60343 5.61183 5.76428 5.79342 5.87134 5.88373 6.00926 6.03643 6.13608 6.23316 6.35047 6.39319 6.51270 6.59878 6.77111 6.95629 6.98994 7.37553 7.51699 7.66295 7.71999 7.79001 8.23100 8.38341 9.22078 9.85514 10.34924 11.30668 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.002403 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.780679 B =11648.808713 C =12084.082007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.113 3.887 14 N -0.606 5.606 15 C 0.513 3.487 16 O -0.550 6.550 17 C -0.134 4.134 18 C -0.061 4.061 19 C -0.131 4.131 20 C -0.073 4.073 21 C -0.170 4.170 22 C 0.090 3.910 23 N -0.485 5.485 24 C 0.101 3.899 25 C 0.109 3.891 26 C -0.148 4.148 27 H 0.027 0.973 28 H 0.042 0.958 29 H -0.004 1.004 30 H 0.251 0.749 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 -20.455 -9.226 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.010 4.010 14 N -0.339 5.339 15 C 0.301 3.699 16 O -0.429 6.429 17 C -0.174 4.174 18 C -0.100 4.100 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.190 4.190 22 C -0.067 4.067 23 N -0.193 5.193 24 C -0.056 4.056 25 C -0.015 4.015 26 C -0.188 4.188 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.244 -21.039 -8.992 22.914 hybrid contribution -0.498 1.645 0.203 1.731 sum 0.746 -19.394 -8.789 21.306 Atomic orbital electron populations 1.20735 0.82781 0.95379 0.99106 1.43964 1.01783 1.00193 1.85868 1.19258 0.98258 0.85505 1.35329 0.91410 1.25041 0.97810 0.98550 0.98336 1.70075 1.18514 1.27037 1.39616 0.86193 0.78600 0.84366 0.77422 1.20352 1.21680 1.21761 1.20278 0.95987 0.86055 0.90598 1.22493 0.99948 0.94447 1.01528 1.21695 0.99761 0.93802 0.85701 1.48203 1.65703 1.11837 1.08122 1.20549 0.76586 0.81545 0.91180 1.90678 1.52410 1.66068 1.33737 1.21673 1.03634 0.95875 0.96224 1.20286 1.03697 0.93267 0.92702 1.20971 0.94706 0.99431 0.98142 1.21583 0.97033 0.96689 0.94547 1.22174 1.00780 0.99084 0.96952 1.22768 0.88321 0.96448 0.99166 1.67691 1.24075 1.18352 1.09182 1.22726 0.98873 0.92804 0.91212 1.21922 1.00401 0.94218 0.84941 1.22558 1.00056 0.94738 1.01433 0.95489 0.93922 0.98522 0.93822 0.91940 0.92293 0.90655 0.89681 0.91800 0.88824 0.88765 0.89827 0.89734 0.84695 0.84760 0.82891 0.82781 0.91284 0.90408 0.91939 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 8.03 59.85 0.48 4.45 16 2 N -0.60 -14.32 2.81 -173.43 -0.49 -14.81 16 3 C -0.25 -6.76 9.59 -15.06 -0.14 -6.91 16 4 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 5 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 16 6 N -0.91 -26.15 10.64 55.49 0.59 -25.56 16 7 Si 0.90 21.51 29.57 -169.99 -5.03 16.48 16 8 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 C 0.18 3.40 2.55 -67.89 -0.17 3.23 16 12 C -0.14 -2.56 5.34 -26.61 -0.14 -2.70 16 13 C 0.11 1.69 6.43 -3.71 -0.02 1.66 16 14 N -0.61 -8.17 2.97 -172.50 -0.51 -8.68 16 15 C 0.51 6.82 7.70 -10.99 -0.08 6.74 16 16 O -0.55 -9.14 15.40 5.55 0.09 -9.05 16 17 C -0.13 -1.25 4.03 -27.88 -0.11 -1.36 16 18 C -0.06 -0.55 4.66 -27.88 -0.13 -0.68 16 19 C -0.13 -1.11 5.15 -104.48 -0.54 -1.65 16 20 C -0.07 -0.57 9.86 -39.28 -0.39 -0.95 16 21 C -0.17 -1.21 10.11 -39.44 -0.40 -1.61 16 22 C 0.09 0.73 11.18 -17.55 -0.20 0.53 16 23 N -0.48 -4.90 10.36 -13.25 -0.14 -5.04 16 24 C 0.10 0.91 10.86 -17.55 -0.19 0.72 16 25 C 0.11 1.28 6.37 -3.48 -0.02 1.26 16 26 C -0.15 -2.27 5.34 -26.38 -0.14 -2.41 16 27 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 28 H 0.04 1.11 7.22 -51.93 -0.37 0.74 16 29 H 0.00 -0.08 6.46 -51.92 -0.34 -0.41 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.06 1.20 7.86 -51.93 -0.41 0.79 16 32 H 0.06 1.12 7.72 -51.93 -0.40 0.72 16 33 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.33 7.01 -51.93 -0.36 0.97 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.73 7.93 -51.93 -0.41 0.32 16 37 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 38 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 40 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 43 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 46 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -32.22 374.39 -9.64 -41.86 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.50 Total: -1.10 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.29 Total: 0.26 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.55 Total: -54.09 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.22 -9.64 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985523008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.232 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds