Wall clock time and date at job start Tue Mar 31 2020 11:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99336 * 2 1 4 4 H 1.08000 * 119.99984 * 202.99023 * 3 2 1 5 5 C 1.38813 * 120.00246 * 22.99833 * 3 2 1 6 6 N 1.31616 * 120.00314 * 11.63763 * 5 3 2 7 7 Si 1.86800 * 119.99973 * 191.64575 * 5 3 2 8 8 H 1.48503 * 109.47065 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47578 * 119.99508 * 7 5 3 10 10 H 1.48499 * 109.46893 * 239.99791 * 7 5 3 11 11 C 1.46493 * 120.00237 * 180.02562 * 2 1 3 12 12 C 1.53047 * 109.45996 * 300.00017 * 11 2 1 13 13 C 1.53189 * 109.30966 * 181.38801 * 12 11 2 14 14 N 1.46928 * 108.77887 * 305.36064 * 13 12 11 15 15 C 1.34774 * 120.63641 * 233.58905 * 14 13 12 16 16 O 1.21286 * 119.99638 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00060 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.46765 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.46805 * 180.02562 * 18 17 15 20 20 C 1.38666 * 120.41770 * 270.25530 * 19 18 17 21 21 C 1.38626 * 118.41902 * 180.22073 * 20 19 18 22 22 C 1.38227 * 119.16174 * 359.48422 * 21 20 19 23 23 N 1.31848 * 120.75940 * 0.29946 * 22 21 20 24 24 C 1.31878 * 121.73023 * 359.97438 * 23 22 21 25 25 C 1.46932 * 118.73395 * 53.86132 * 14 13 12 26 26 C 1.53046 * 109.46041 * 60.06661 * 11 2 1 27 27 H 1.08998 * 109.47109 * 273.83842 * 1 2 3 28 28 H 1.08992 * 109.47365 * 33.84246 * 1 2 3 29 29 H 1.09009 * 109.46746 * 153.84491 * 1 2 3 30 30 H 0.96996 * 120.00286 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.44671 * 180.02562 * 11 2 1 32 32 H 1.08991 * 109.49852 * 61.43353 * 12 11 2 33 33 H 1.09004 * 109.52198 * 301.35065 * 12 11 2 34 34 H 1.09005 * 109.58611 * 185.57996 * 13 12 11 35 35 H 1.08995 * 109.71019 * 65.21965 * 13 12 11 36 36 H 1.08998 * 109.47346 * 60.00265 * 17 15 14 37 37 H 1.08996 * 109.47474 * 300.00213 * 17 15 14 38 38 H 1.08998 * 109.47139 * 59.99934 * 18 17 15 39 39 H 1.08996 * 109.47350 * 299.99711 * 18 17 15 40 40 H 1.08003 * 120.79418 * 359.97438 * 20 19 18 41 41 H 1.08004 * 120.42265 * 179.75887 * 21 20 19 42 42 H 1.08003 * 119.61904 * 180.27681 * 22 21 20 43 43 H 1.08009 * 119.61668 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.58515 * 65.93342 * 25 14 13 45 45 H 1.08999 * 109.58432 * 186.35524 * 25 14 13 46 46 H 1.08995 * 109.49527 * 298.56333 * 26 11 2 47 47 H 1.09003 * 109.49329 * 58.66386 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1653 1.2232 -0.3653 5 6 1.5382 2.3403 0.4697 6 7 0.3978 2.2623 1.1221 7 14 2.3339 4.0046 0.1755 8 1 3.6015 3.8213 -0.5761 9 1 1.4114 4.8624 -0.6107 10 1 2.6219 4.6530 1.4801 11 6 2.1976 -1.2686 -0.0006 12 6 1.8277 -2.0715 1.2488 13 6 2.6214 -3.3817 1.2623 14 7 2.3852 -4.0909 -0.0025 15 6 1.9591 -5.3696 -0.0037 16 8 1.7666 -5.9456 1.0461 17 6 1.7208 -6.0831 -1.3095 18 6 1.2447 -7.5103 -1.0312 19 6 1.0070 -8.2242 -2.3370 20 6 -0.2367 -8.1740 -2.9483 21 6 -0.4107 -8.8495 -4.1463 22 6 0.6566 -9.5368 -4.6932 23 7 1.8268 -9.5591 -4.0859 24 6 2.0270 -8.9326 -2.9429 25 6 2.6281 -3.3816 -1.2662 26 6 1.8290 -2.0697 -1.2515 27 1 -0.3633 0.0688 1.0253 28 1 -0.3634 0.8535 -0.5723 29 1 -0.3633 -0.9225 -0.4530 30 1 -0.0296 3.0689 1.4500 31 1 3.2691 -1.0690 0.0000 32 1 0.7606 -2.2928 1.2363 33 1 2.0686 -1.4910 2.1394 34 1 2.2901 -4.0011 2.0959 35 1 3.6847 -3.1662 1.3673 36 1 2.6483 -6.1142 -1.8812 37 1 0.9597 -5.5515 -1.8805 38 1 0.3171 -7.4789 -0.4597 39 1 2.0055 -8.0423 -0.4600 40 1 -1.0515 -7.6250 -2.4998 41 1 -1.3669 -8.8353 -4.6482 42 1 0.5305 -10.0619 -5.6285 43 1 2.9997 -8.9732 -2.4752 44 1 3.6916 -3.1639 -1.3644 45 1 2.3011 -4.0009 -2.1014 46 1 0.7618 -2.2910 -1.2403 47 1 2.0712 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985523008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:42 Heat of formation + Delta-G solvation = -2.979966 kcal Electronic energy + Delta-G solvation = -26262.900205 eV Core-core repulsion = 22638.144015 eV Total energy + Delta-G solvation = -3624.756190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38150 -40.88617 -38.98749 -36.69658 -35.54361 -33.94210 -32.97840 -32.29545 -31.46805 -30.63136 -28.03629 -26.84192 -25.67690 -24.44435 -24.07175 -23.66119 -22.40804 -21.03272 -19.67862 -18.75860 -18.30522 -17.82511 -17.40855 -17.03252 -16.80266 -16.47752 -15.85512 -15.71291 -15.18290 -15.08136 -14.93497 -14.87282 -14.56483 -14.22541 -14.04347 -13.95282 -13.89032 -13.56684 -13.20153 -13.11732 -12.95217 -12.78737 -12.65253 -12.48675 -12.33355 -12.17633 -12.02606 -11.98560 -11.81870 -11.59930 -11.22871 -10.84909 -10.66283 -10.61075 -10.34019 -9.84949 -9.63350 -8.75607 -7.80951 -5.29215 0.20076 0.38679 1.46458 1.47898 1.57850 1.65167 2.05390 2.51418 2.90527 3.32721 3.42817 3.61877 3.67908 3.88391 3.93442 3.99552 4.07446 4.13888 4.14887 4.19045 4.23411 4.35644 4.37674 4.40978 4.57795 4.60565 4.68892 4.76491 4.84052 4.84924 4.89767 4.92735 4.98421 5.01522 5.12265 5.17588 5.25780 5.26474 5.38946 5.42977 5.51540 5.61721 5.68208 5.73042 5.83820 6.35064 6.47755 7.07542 7.17024 7.19161 7.90145 8.34537 9.22498 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.002403 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.780679 B =11648.808713 C =12084.082007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.612 5.612 3 C -0.256 4.256 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.968 3.032 8 H -0.263 1.263 9 H -0.294 1.294 10 H -0.296 1.296 11 C 0.173 3.827 12 C -0.131 4.131 13 C 0.123 3.877 14 N -0.609 5.609 15 C 0.511 3.489 16 O -0.588 6.588 17 C -0.125 4.125 18 C -0.053 4.053 19 C -0.133 4.133 20 C -0.080 4.080 21 C -0.168 4.168 22 C 0.079 3.921 23 N -0.513 5.513 24 C 0.089 3.911 25 C 0.115 3.885 26 C -0.137 4.137 27 H -0.005 1.005 28 H 0.015 0.985 29 H 0.026 0.974 30 H 0.246 0.754 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.164 0.836 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.054 0.946 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 -21.758 -11.508 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.334 5.334 3 C -0.386 4.386 4 H 0.092 0.908 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.796 3.204 8 H -0.187 1.187 9 H -0.221 1.221 10 H -0.223 1.223 11 C 0.066 3.934 12 C -0.172 4.172 13 C 0.000 4.000 14 N -0.341 5.341 15 C 0.301 3.699 16 O -0.469 6.469 17 C -0.164 4.164 18 C -0.092 4.092 19 C -0.135 4.135 20 C -0.106 4.106 21 C -0.187 4.187 22 C -0.077 4.077 23 N -0.222 5.222 24 C -0.068 4.068 25 C -0.007 4.007 26 C -0.177 4.177 27 H 0.013 0.987 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.166 0.834 41 H 0.177 0.823 42 H 0.191 0.809 43 H 0.181 0.819 44 H 0.105 0.895 45 H 0.133 0.867 46 H 0.072 0.928 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.186 -22.375 -11.306 25.165 hybrid contribution -0.795 1.969 0.912 2.311 sum 1.391 -20.406 -10.394 22.943 Atomic orbital electron populations 1.20395 0.83332 0.95532 0.96906 1.44217 1.01805 1.01464 1.85950 1.19629 0.98454 0.86621 1.33920 0.90773 1.25814 0.98612 1.01955 0.98881 1.70249 1.20080 1.27338 1.41276 0.85187 0.78140 0.80151 0.76880 1.18728 1.22060 1.22336 1.20542 0.95438 0.84668 0.92771 1.22277 0.99288 0.95649 0.99953 1.21452 0.99917 0.91993 0.86679 1.48286 1.65694 1.12119 1.08000 1.21256 0.75291 0.81224 0.92138 1.90669 1.53824 1.66858 1.35552 1.21694 1.05273 0.95442 0.94040 1.20160 1.02973 0.93226 0.92834 1.20880 0.95073 0.99705 0.97822 1.21853 0.97131 0.96779 0.94835 1.22458 1.01571 0.98059 0.96618 1.23209 0.88088 0.96553 0.99882 1.67701 1.25320 1.19286 1.09914 1.22922 0.99591 0.92981 0.91261 1.22026 1.00931 0.92608 0.85143 1.22376 1.00145 0.96066 0.99076 0.98699 0.96659 0.95540 0.94504 0.91963 0.94017 0.93214 0.90668 0.90258 0.86421 0.87184 0.90883 0.90351 0.83387 0.82254 0.80884 0.81872 0.89469 0.86746 0.92764 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.04 8.03 127.77 1.03 10.06 16 2 N -0.61 -29.53 2.81 -702.61 -1.97 -31.50 16 3 C -0.26 -13.64 9.59 84.03 0.81 -12.84 16 4 H 0.07 3.79 7.82 -2.91 -0.02 3.76 16 5 C -0.06 -3.22 5.12 84.86 0.43 -2.79 16 6 N -0.94 -55.95 10.64 21.65 0.23 -55.72 16 7 Si 0.97 44.62 29.57 68.60 2.03 46.65 16 8 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 9 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 10 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 11 C 0.17 6.39 2.55 45.02 0.11 6.50 16 12 C -0.13 -4.69 5.34 30.67 0.16 -4.52 16 13 C 0.12 3.54 6.43 86.36 0.56 4.10 16 14 N -0.61 -14.90 2.97 -818.06 -2.43 -17.33 16 15 C 0.51 12.44 7.70 87.66 0.67 13.12 16 16 O -0.59 -19.00 15.40 -3.05 -0.05 -19.04 16 17 C -0.13 -1.92 4.03 29.85 0.12 -1.80 16 18 C -0.05 -0.86 4.66 29.85 0.14 -0.72 16 19 C -0.13 -1.98 5.15 -19.77 -0.10 -2.08 16 20 C -0.08 -1.05 9.86 22.46 0.22 -0.83 16 21 C -0.17 -1.93 10.11 22.36 0.23 -1.70 16 22 C 0.08 1.11 11.18 84.69 0.95 2.06 16 23 N -0.51 -9.54 10.36 -195.84 -2.03 -11.57 16 24 C 0.09 1.46 10.86 84.67 0.92 2.37 16 25 C 0.12 2.27 6.37 86.51 0.55 2.82 16 26 C -0.14 -3.85 5.34 30.82 0.16 -3.69 16 27 H -0.01 -0.29 7.42 -2.39 -0.02 -0.31 16 28 H 0.01 0.80 7.22 -2.39 -0.02 0.78 16 29 H 0.03 1.11 6.46 -2.38 -0.02 1.10 16 30 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.06 2.30 7.86 -2.39 -0.02 2.28 16 32 H 0.04 1.61 7.72 -2.39 -0.02 1.59 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 2.35 7.01 -2.38 -0.02 2.33 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 36 H 0.12 1.31 7.93 -2.39 -0.02 1.29 16 37 H 0.11 1.41 7.70 -2.39 -0.02 1.39 16 38 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 39 H 0.08 1.35 8.05 -2.39 -0.02 1.33 16 40 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.11 1.51 5.93 -2.39 -0.01 1.49 16 46 H 0.05 1.63 6.72 -2.39 -0.02 1.61 16 47 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -71.70 374.39 3.69 -68.01 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.95 Total: 10.43 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.96 Total: 10.07 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -6.20 Total: -116.12 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -71.70 3.69 -68.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985523008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.033 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds