Wall clock time and date at job start Tue Mar 31 2020 11:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99778 * 2 1 4 4 H 1.08005 * 119.99674 * 202.98952 * 3 2 1 5 5 C 1.38812 * 120.00136 * 22.98894 * 3 2 1 6 6 N 1.31614 * 119.99859 * 11.63688 * 5 3 2 7 7 Si 1.86801 * 119.99828 * 191.63699 * 5 3 2 8 8 H 1.48509 * 109.46913 * 89.99825 * 7 5 3 9 9 H 1.48494 * 109.47222 * 209.99571 * 7 5 3 10 10 H 1.48499 * 109.47466 * 330.00038 * 7 5 3 11 11 C 1.46502 * 120.00130 * 179.97438 * 2 1 3 12 12 C 1.53034 * 109.45974 * 300.00340 * 11 2 1 13 13 C 1.53191 * 109.31286 * 181.38493 * 12 11 2 14 14 N 1.46933 * 108.77587 * 305.36834 * 13 12 11 15 15 C 1.34771 * 120.62765 * 233.58511 * 14 13 12 16 16 O 1.21281 * 120.00413 * 359.97438 * 15 14 13 17 17 C 1.50708 * 119.99759 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.46698 * 180.02562 * 17 15 14 19 19 C 1.50708 * 109.46698 * 180.02562 * 18 17 15 20 20 C 1.38228 * 119.61798 * 124.99930 * 19 18 17 21 21 C 1.38621 * 119.16347 * 180.02562 * 20 19 18 22 22 C 1.38675 * 118.41713 * 359.97438 * 21 20 19 23 23 C 1.38181 * 119.16706 * 0.27715 * 22 21 20 24 24 N 1.31849 * 119.61943 * 305.02227 * 19 18 17 25 25 C 1.46920 * 118.73671 * 53.85405 * 14 13 12 26 26 C 1.53042 * 109.45844 * 60.07212 * 11 2 1 27 27 H 1.08997 * 109.47172 * 273.85014 * 1 2 3 28 28 H 1.08997 * 109.46518 * 33.85549 * 1 2 3 29 29 H 1.09004 * 109.46798 * 153.84976 * 1 2 3 30 30 H 0.97008 * 119.99747 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.44598 * 180.02562 * 11 2 1 32 32 H 1.09002 * 109.50324 * 61.43562 * 12 11 2 33 33 H 1.08998 * 109.52887 * 301.35389 * 12 11 2 34 34 H 1.09004 * 109.58774 * 185.58005 * 13 12 11 35 35 H 1.08996 * 109.70517 * 65.22213 * 13 12 11 36 36 H 1.08994 * 109.47170 * 60.00228 * 17 15 14 37 37 H 1.08997 * 109.46988 * 299.99467 * 17 15 14 38 38 H 1.08993 * 109.47451 * 60.00635 * 18 17 15 39 39 H 1.09005 * 109.47457 * 299.99618 * 18 17 15 40 40 H 1.08000 * 120.41701 * 0.04195 * 20 19 18 41 41 H 1.07998 * 120.79521 * 180.02562 * 21 20 19 42 42 H 1.08002 * 120.41487 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.62155 * 179.70260 * 23 22 21 44 44 H 1.09006 * 109.58622 * 65.93870 * 25 14 13 45 45 H 1.09002 * 109.58115 * 186.35126 * 25 14 13 46 46 H 1.08995 * 109.49532 * 298.56742 * 26 11 2 47 47 H 1.09001 * 109.49668 * 58.62826 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1654 1.2231 -0.3653 5 6 1.5383 2.3403 0.4695 6 7 0.3978 2.2623 1.1217 7 14 2.3343 4.0045 0.1755 8 1 1.8465 4.5664 -1.1097 9 1 1.9796 4.9258 1.2848 10 1 3.8095 3.8444 0.1176 11 6 2.1976 -1.2687 0.0006 12 6 1.8276 -2.0705 1.2505 13 6 2.6213 -3.3807 1.2653 14 7 2.3851 -4.0910 0.0009 15 6 1.9590 -5.3695 0.0008 16 8 1.7672 -5.9450 1.0511 17 6 1.7207 -6.0843 -1.3044 18 6 1.2445 -7.5112 -1.0249 19 6 1.0068 -8.2261 -2.3301 20 6 1.6438 -9.4279 -2.5766 21 6 1.4188 -10.0772 -3.7805 22 6 0.5572 -9.4911 -4.6955 23 6 -0.0397 -8.2850 -4.3815 24 7 0.1941 -7.6979 -3.2239 25 6 2.6280 -3.3827 -1.2632 26 6 1.8290 -2.0708 -1.2497 27 1 -0.3633 0.0690 1.0253 28 1 -0.3632 0.8534 -0.5725 29 1 -0.3633 -0.9225 -0.4529 30 1 -0.0297 3.0691 1.4495 31 1 3.2691 -1.0691 0.0009 32 1 0.7604 -2.2918 1.2382 33 1 2.0684 -1.4893 2.1406 34 1 2.2898 -3.9993 2.0993 35 1 3.6845 -3.1652 1.3701 36 1 2.6482 -6.1158 -1.8760 37 1 0.9596 -5.5531 -1.8759 38 1 0.3168 -7.4793 -0.4536 39 1 2.0053 -8.0428 -0.4532 40 1 2.3081 -9.8557 -1.8404 41 1 1.9022 -11.0176 -4.0003 42 1 0.3584 -9.9692 -5.6433 43 1 -0.7081 -7.8196 -5.0907 44 1 3.6916 -3.1651 -1.3616 45 1 2.3012 -4.0027 -2.0980 46 1 0.7618 -2.2919 -1.2384 47 1 2.0707 -1.4892 -2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985569013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:39 Heat of formation + Delta-G solvation = 17.422473 kcal Electronic energy + Delta-G solvation = -26273.258916 eV Core-core repulsion = 22649.387442 eV Total energy + Delta-G solvation = -3623.871474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57401 -39.89357 -37.52836 -35.02625 -34.34694 -32.64437 -32.19577 -31.09197 -30.08990 -29.53929 -25.99877 -25.82211 -24.45177 -23.77055 -22.79915 -22.19681 -21.46860 -19.63544 -18.39661 -17.42343 -16.81948 -16.68061 -16.50443 -15.77424 -15.55081 -15.48194 -14.99118 -14.36997 -13.92806 -13.85676 -13.83722 -13.53959 -13.45072 -13.19744 -12.91773 -12.74856 -12.45146 -12.18302 -11.98254 -11.82367 -11.64179 -11.41206 -11.28225 -10.89372 -10.82871 -10.77898 -10.35663 -10.21052 -10.18554 -10.09189 -9.83163 -9.70841 -9.65138 -9.51502 -9.23252 -8.54189 -8.39674 -6.72488 -5.69778 -3.16340 0.79982 0.97418 2.77082 3.16000 3.38851 3.44954 3.46449 3.51398 4.00316 4.35079 4.49629 4.53216 4.72296 4.75550 4.80062 4.95579 5.03932 5.13253 5.27248 5.29039 5.39140 5.43150 5.47651 5.49834 5.53924 5.68634 5.69293 5.82593 5.86280 5.93184 5.93631 5.95851 6.08514 6.20288 6.29719 6.40560 6.42540 6.57654 6.67386 6.84026 7.02099 7.05026 7.43016 7.59889 7.72663 7.76724 7.83187 8.31895 8.42768 9.26429 9.89999 10.39710 11.34887 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.002420 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.189887 B =11568.776604 C =12120.506113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.180 3.820 12 C -0.144 4.144 13 C 0.113 3.887 14 N -0.606 5.606 15 C 0.514 3.486 16 O -0.553 6.553 17 C -0.130 4.130 18 C -0.054 4.054 19 C 0.134 3.866 20 C -0.170 4.170 21 C -0.074 4.074 22 C -0.183 4.183 23 C 0.103 3.897 24 N -0.480 5.480 25 C 0.109 3.891 26 C -0.148 4.148 27 H 0.027 0.973 28 H 0.042 0.958 29 H -0.003 1.003 30 H 0.252 0.748 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 -23.253 -10.462 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.009 4.009 14 N -0.339 5.339 15 C 0.303 3.697 16 O -0.431 6.431 17 C -0.170 4.170 18 C -0.092 4.092 19 C -0.004 4.004 20 C -0.190 4.190 21 C -0.100 4.100 22 C -0.203 4.203 23 C -0.054 4.054 24 N -0.190 5.190 25 C -0.014 4.014 26 C -0.188 4.188 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.173 0.827 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.550 -22.577 -9.637 24.680 hybrid contribution 0.693 0.241 -0.465 0.868 sum 3.243 -22.336 -10.101 24.727 Atomic orbital electron populations 1.20736 0.82762 0.95434 0.99094 1.43961 1.01796 1.00187 1.85868 1.19224 0.98247 0.85546 1.35313 0.91467 1.25040 0.97840 0.98519 0.98357 1.70073 1.18518 1.27085 1.39578 0.86254 0.78756 0.84215 0.77289 1.21571 1.21803 1.20545 1.20278 0.95921 0.86040 0.90651 1.22489 1.00009 0.94450 1.01471 1.21685 0.99670 0.93794 0.85794 1.48187 1.65765 1.11861 1.08067 1.20597 0.76375 0.81548 0.91224 1.90663 1.52529 1.66185 1.33765 1.21572 1.03601 0.95789 0.96033 1.20299 1.03455 0.93843 0.91603 1.21357 0.91623 0.92139 0.95252 1.22025 1.01892 0.96681 0.98407 1.21594 0.95886 0.99335 0.93207 1.22144 0.99336 0.97761 1.01011 1.22800 0.96905 0.92264 0.93415 1.67510 1.14763 1.34424 1.02265 1.21912 1.00232 0.94272 0.85024 1.22550 1.00185 0.94712 1.01323 0.95503 0.93945 0.98432 0.93798 0.91995 0.92251 0.90706 0.89705 0.91881 0.89299 0.87761 0.89035 0.89551 0.84707 0.84919 0.84913 0.82687 0.91424 0.90295 0.91842 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 8.03 59.85 0.48 4.55 16 2 N -0.60 -14.66 2.81 -173.43 -0.49 -15.15 16 3 C -0.25 -6.87 9.59 -15.06 -0.14 -7.01 16 4 H 0.07 1.77 7.82 -52.48 -0.41 1.36 16 5 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 16 6 N -0.91 -26.52 10.64 55.49 0.59 -25.93 16 7 Si 0.90 21.79 29.57 -169.99 -5.03 16.77 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 C 0.18 3.52 2.55 -67.89 -0.17 3.35 16 12 C -0.14 -2.65 5.34 -26.61 -0.14 -2.80 16 13 C 0.11 1.77 6.43 -3.71 -0.02 1.74 16 14 N -0.61 -8.74 2.97 -172.50 -0.51 -9.25 16 15 C 0.51 7.42 7.70 -10.98 -0.08 7.34 16 16 O -0.55 -9.66 15.39 5.56 0.09 -9.57 16 17 C -0.13 -1.44 3.90 -27.88 -0.11 -1.54 16 18 C -0.05 -0.57 4.90 -27.88 -0.14 -0.70 16 19 C 0.13 1.35 6.18 -82.58 -0.51 0.84 16 20 C -0.17 -1.37 9.71 -39.44 -0.38 -1.75 16 21 C -0.07 -0.50 10.18 -39.28 -0.40 -0.90 16 22 C -0.18 -1.24 10.11 -39.44 -0.40 -1.64 16 23 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 24 N -0.48 -5.22 9.88 -9.47 -0.09 -5.31 16 25 C 0.11 1.39 6.37 -3.49 -0.02 1.37 16 26 C -0.15 -2.39 5.34 -26.39 -0.14 -2.53 16 27 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 28 H 0.04 1.13 7.22 -51.93 -0.37 0.76 16 29 H 0.00 -0.06 6.46 -51.93 -0.34 -0.40 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 32 H 0.06 1.17 7.72 -51.93 -0.40 0.77 16 33 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.38 7.01 -51.93 -0.36 1.02 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.84 7.93 -51.93 -0.41 0.43 16 37 H 0.10 1.19 7.51 -51.93 -0.39 0.80 16 38 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.09 0.84 7.83 -51.93 -0.41 0.44 16 40 H 0.14 0.83 7.95 -52.49 -0.42 0.41 16 41 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.83 5.93 -51.93 -0.31 0.53 16 46 H 0.06 1.09 6.72 -51.93 -0.35 0.75 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -32.60 373.74 -9.76 -42.36 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.48 Total: -0.45 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.47 Total: 0.91 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.50 Total: -55.65 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.60 -9.76 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985569013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.783 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds