Wall clock time and date at job start Tue Mar 31 2020 11:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99702 * 2 1 4 4 H 1.07998 * 120.00368 * 204.30117 * 3 2 1 5 5 C 1.38814 * 119.99964 * 24.30565 * 3 2 1 6 6 N 1.31618 * 120.00091 * 15.46744 * 5 3 2 7 7 Si 1.86799 * 120.00232 * 195.46646 * 5 3 2 8 8 H 1.48507 * 109.46848 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47127 * 119.99740 * 7 5 3 10 10 H 1.48494 * 109.47267 * 240.00218 * 7 5 3 11 11 C 1.46499 * 120.00747 * 180.02562 * 2 1 3 12 12 C 1.53042 * 109.45613 * 300.00116 * 11 2 1 13 13 C 1.53199 * 109.31263 * 181.36811 * 12 11 2 14 14 N 1.46926 * 108.77345 * 305.36231 * 13 12 11 15 15 C 1.34776 * 120.63304 * 233.58284 * 14 13 12 16 16 O 1.21631 * 119.99431 * 5.10163 * 15 14 13 17 17 C 1.47263 * 120.00150 * 184.82799 * 15 14 13 18 18 C 1.46689 * 126.93888 * 42.90285 * 17 15 14 19 19 C 1.34487 * 106.33060 * 180.02562 * 18 17 15 20 20 N 1.36454 * 108.85560 * 359.97438 * 19 18 17 21 21 H 0.96994 * 124.84856 * 180.02562 * 20 19 18 22 22 C 1.34663 * 110.29749 * 359.73381 * 20 19 18 23 23 C 1.50697 * 125.80130 * 180.31556 * 22 20 19 24 24 C 1.53002 * 117.49992 * 8.76965 * 23 22 20 25 25 C 1.52996 * 117.50111 * 300.14241 * 23 22 20 26 26 C 1.46933 * 118.73823 * 53.86196 * 14 13 12 27 27 C 1.53035 * 109.44852 * 60.05668 * 11 2 1 28 28 H 1.09000 * 109.46568 * 270.71731 * 1 2 3 29 29 H 1.08991 * 109.47347 * 30.72283 * 1 2 3 30 30 H 1.09006 * 109.46784 * 150.72488 * 1 2 3 31 31 H 0.96999 * 120.00048 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46794 * 180.02562 * 11 2 1 33 33 H 1.09000 * 109.50162 * 61.41790 * 12 11 2 34 34 H 1.09002 * 109.49860 * 301.32005 * 12 11 2 35 35 H 1.08994 * 109.58581 * 185.57782 * 13 12 11 36 36 H 1.09003 * 109.70233 * 65.22009 * 13 12 11 37 37 H 1.08000 * 126.83600 * 0.02562 * 18 17 15 38 38 H 1.07996 * 125.57508 * 179.97438 * 19 18 17 39 39 H 1.09004 * 115.54706 * 154.47534 * 23 22 20 40 40 H 1.08999 * 117.49564 * 359.97438 * 24 23 22 41 41 H 1.08998 * 117.49949 * 145.02145 * 24 23 22 42 42 H 1.08991 * 117.50308 * 214.97865 * 25 23 22 43 43 H 1.09004 * 117.49822 * 0.02562 * 25 23 22 44 44 H 1.09003 * 109.58295 * 65.92235 * 26 14 13 45 45 H 1.08991 * 109.58721 * 186.34812 * 26 14 13 46 46 H 1.09005 * 109.50370 * 298.58026 * 27 11 2 47 47 H 1.09006 * 109.49986 * 58.67044 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1579 1.2275 -0.3849 5 6 1.5478 2.3348 0.4948 6 7 0.4616 2.2433 1.2325 7 14 2.2794 4.0108 0.1138 8 1 3.4912 3.8421 -0.7280 9 1 1.2803 4.8329 -0.6151 10 1 2.6487 4.6897 1.3818 11 6 2.1977 -1.2686 -0.0006 12 6 1.8278 -2.0715 1.2488 13 6 2.6212 -3.3819 1.2622 14 7 2.3846 -4.0910 -0.0027 15 6 1.9583 -5.3695 -0.0039 16 8 1.6769 -5.9177 1.0448 17 6 1.8274 -6.1009 -1.2753 18 6 2.7731 -6.0958 -2.3966 19 6 2.2474 -6.8993 -3.3383 20 7 1.0599 -7.3940 -2.8832 21 1 0.4856 -7.9992 -3.3778 22 6 0.8025 -6.9269 -1.6467 23 6 -0.4104 -7.2555 -0.8150 24 6 -1.3416 -8.3559 -1.3278 25 6 -1.7808 -6.8916 -1.3896 26 6 2.6275 -3.3817 -1.2663 27 6 1.8288 -2.0695 -1.2513 28 1 -0.3632 0.0129 1.0276 29 1 -0.3633 0.8833 -0.5250 30 1 -0.3633 -0.8965 -0.5026 31 1 0.0409 3.0461 1.5780 32 1 3.2692 -1.0693 0.0000 33 1 0.7605 -2.2926 1.2364 34 1 2.0692 -1.4908 2.1391 35 1 2.2899 -4.0011 2.0957 36 1 3.6846 -3.1666 1.3671 37 1 3.7059 -5.5545 -2.4545 38 1 2.6924 -7.1175 -4.2979 39 1 -0.2781 -7.1699 0.2636 40 1 -1.0771 -8.8418 -2.2670 41 1 -1.8221 -8.9945 -0.5866 42 1 -2.5502 -6.5669 -0.6892 43 1 -1.8052 -6.4147 -2.3695 44 1 3.6911 -3.1641 -1.3646 45 1 2.3004 -4.0008 -2.1015 46 1 0.7614 -2.2906 -1.2402 47 1 2.0708 -1.4875 -2.1406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985605317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:32 Heat of formation + Delta-G solvation = 62.954615 kcal Electronic energy + Delta-G solvation = -27231.851345 eV Core-core repulsion = 23609.954293 eV Total energy + Delta-G solvation = -3621.897052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52909 -39.39687 -37.24341 -37.05765 -34.89447 -32.25158 -31.41067 -30.21708 -29.59795 -29.25354 -25.93804 -25.11505 -23.50004 -22.72762 -22.65079 -22.34840 -21.14234 -20.63693 -19.25615 -18.15956 -17.77728 -16.68680 -16.21495 -15.69254 -15.40236 -14.94881 -14.90941 -14.46332 -14.10544 -13.86992 -13.68067 -13.39816 -13.34280 -13.10974 -12.87151 -12.48745 -12.21107 -12.11972 -11.92682 -11.87622 -11.52820 -11.34181 -10.99844 -10.89717 -10.77196 -10.73032 -10.68632 -10.34252 -10.14401 -10.01966 -9.80026 -9.62169 -9.47761 -8.83544 -8.49540 -8.31476 -8.13773 -6.66750 -5.69033 -3.13836 1.77171 2.35030 2.90742 3.29795 3.39930 3.47146 3.48202 3.49439 3.72693 4.25756 4.52759 4.54201 4.70191 4.79372 4.96502 5.03572 5.27122 5.31131 5.36431 5.42709 5.44533 5.55732 5.60255 5.62050 5.67485 5.74932 5.79846 5.89121 5.91797 6.02121 6.04836 6.21267 6.29440 6.39248 6.52291 6.62162 6.66094 6.75500 6.84086 6.91508 7.09860 7.13934 7.26776 7.41000 7.75335 7.79154 7.85159 8.46042 8.53920 9.28406 9.92944 10.43927 11.36574 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.003097 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.369105 B = 9039.720280 C = 9262.469229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.254 4.254 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.904 5.904 7 Si 0.901 3.099 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.179 3.821 12 C -0.143 4.143 13 C 0.114 3.886 14 N -0.599 5.599 15 C 0.592 3.408 16 O -0.556 6.556 17 C -0.211 4.211 18 C -0.165 4.165 19 C -0.016 4.016 20 N -0.554 5.554 21 H 0.412 0.588 22 C 0.121 3.879 23 C -0.093 4.093 24 C -0.179 4.179 25 C -0.167 4.167 26 C 0.107 3.893 27 C -0.145 4.145 28 H 0.023 0.977 29 H 0.042 0.958 30 H -0.002 1.002 31 H 0.251 0.749 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.147 0.853 38 H 0.169 0.831 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 -21.015 -9.961 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.316 5.316 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.549 5.549 7 Si 0.731 3.269 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.183 4.183 13 C -0.008 4.008 14 N -0.331 5.331 15 C 0.381 3.619 16 O -0.436 6.436 17 C -0.221 4.221 18 C -0.190 4.190 19 C -0.143 4.143 20 N -0.150 5.150 21 H 0.248 0.752 22 C 0.005 3.995 23 C -0.111 4.111 24 C -0.216 4.216 25 C -0.205 4.205 26 C -0.016 4.016 27 C -0.185 4.185 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.187 0.813 39 H 0.157 0.843 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.019 -21.188 -9.425 23.190 hybrid contribution 0.107 0.859 -0.473 0.986 sum 0.087 -20.329 -9.898 22.611 Atomic orbital electron populations 1.20685 0.83029 0.95911 0.98491 1.43952 1.01647 1.00263 1.85767 1.19246 0.99177 0.85694 1.34285 0.91509 1.25019 0.98357 0.98486 0.97794 1.70090 1.22023 1.27211 1.35545 0.86243 0.78409 0.84656 0.77583 1.20326 1.21712 1.21831 1.20305 0.95891 0.85986 0.90759 1.22469 0.99972 0.94459 1.01389 1.21673 0.99560 0.93787 0.85819 1.47971 1.65796 1.11417 1.07891 1.17414 0.76072 0.80861 0.87551 1.90717 1.51327 1.68386 1.33187 1.20055 0.98653 1.06449 0.96955 1.22036 1.00756 1.03430 0.92767 1.21692 0.88574 1.02988 1.01052 1.41444 1.19542 1.39757 1.14208 0.75158 1.19146 0.96553 0.97834 0.85998 1.20780 0.86714 1.03841 0.99812 1.22983 1.03748 0.92029 1.02890 1.23072 0.97011 0.97338 1.03045 1.22042 0.99697 0.94010 0.85839 1.22522 1.00125 0.94887 1.01008 0.95884 0.93970 0.98337 0.93885 0.92011 0.92327 0.90768 0.89724 0.91927 0.83508 0.81333 0.84329 0.89407 0.87777 0.87702 0.88674 0.91907 0.89272 0.92118 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 8.08 59.85 0.48 4.56 16 2 N -0.59 -14.83 2.80 -173.44 -0.49 -15.31 16 3 C -0.25 -6.96 9.55 -15.06 -0.14 -7.11 16 4 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 5 C 0.00 0.06 5.01 -17.43 -0.09 -0.03 16 6 N -0.90 -26.58 10.97 55.49 0.61 -25.97 16 7 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 C 0.18 3.62 2.55 -67.89 -0.17 3.45 16 12 C -0.14 -2.73 5.34 -26.61 -0.14 -2.87 16 13 C 0.11 1.89 6.44 -3.71 -0.02 1.86 16 14 N -0.60 -9.49 2.97 -173.82 -0.52 -10.01 16 15 C 0.59 9.83 7.42 -12.59 -0.09 9.73 16 16 O -0.56 -10.73 15.35 5.25 0.08 -10.65 16 17 C -0.21 -2.91 5.22 -103.35 -0.54 -3.45 16 18 C -0.17 -1.80 8.75 -37.50 -0.33 -2.13 16 19 C -0.02 -0.13 11.89 -16.82 -0.20 -0.33 16 20 N -0.55 -4.69 5.80 -9.11 -0.05 -4.74 16 21 H 0.41 2.23 7.84 -40.82 -0.32 1.91 16 22 C 0.12 1.42 6.69 -81.88 -0.55 0.88 16 23 C -0.09 -1.02 5.94 -91.77 -0.54 -1.57 16 24 C -0.18 -1.37 10.13 -26.73 -0.27 -1.64 16 25 C -0.17 -1.51 10.23 -26.73 -0.27 -1.78 16 26 C 0.11 1.52 5.71 -3.48 -0.02 1.50 16 27 C -0.15 -2.49 5.33 -26.39 -0.14 -2.63 16 28 H 0.02 0.62 7.57 -51.93 -0.39 0.23 16 29 H 0.04 1.13 7.20 -51.93 -0.37 0.75 16 30 H 0.00 -0.04 6.46 -51.93 -0.34 -0.38 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.06 1.26 7.87 -51.93 -0.41 0.85 16 33 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.15 1.41 7.68 -52.49 -0.40 1.00 16 38 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 1.84 7.09 -51.93 -0.37 1.47 16 40 H 0.09 0.51 7.08 -51.93 -0.37 0.15 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.15 4.85 -51.93 -0.25 0.89 16 46 H 0.06 1.11 6.72 -51.93 -0.35 0.76 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -33.16 369.35 -10.14 -43.30 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.26 Total: 2.53 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.05 Total: -1.54 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.45 Total: -56.03 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.16 -10.14 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985605317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.253 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds