Wall clock time and date at job start Tue Mar 31 2020 11:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 119.99702 * 2 1 4 4 H 1.07998 * 120.00368 * 204.30117 * 3 2 1 5 5 C 1.38814 * 119.99964 * 24.30565 * 3 2 1 6 6 N 1.31618 * 120.00091 * 15.46744 * 5 3 2 7 7 Si 1.86799 * 120.00232 * 195.46646 * 5 3 2 8 8 H 1.48507 * 109.46848 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47127 * 119.99740 * 7 5 3 10 10 H 1.48494 * 109.47267 * 240.00218 * 7 5 3 11 11 C 1.46499 * 120.00747 * 180.02562 * 2 1 3 12 12 C 1.53042 * 109.45613 * 300.00116 * 11 2 1 13 13 C 1.53199 * 109.31263 * 181.36811 * 12 11 2 14 14 N 1.46926 * 108.77345 * 305.36231 * 13 12 11 15 15 C 1.34776 * 120.63304 * 233.58284 * 14 13 12 16 16 O 1.21631 * 119.99431 * 5.10163 * 15 14 13 17 17 C 1.47263 * 120.00150 * 184.82799 * 15 14 13 18 18 C 1.46689 * 126.93888 * 42.90285 * 17 15 14 19 19 C 1.34487 * 106.33060 * 180.02562 * 18 17 15 20 20 N 1.36454 * 108.85560 * 359.97438 * 19 18 17 21 21 H 0.96994 * 124.84856 * 180.02562 * 20 19 18 22 22 C 1.34663 * 110.29749 * 359.73381 * 20 19 18 23 23 C 1.50697 * 125.80130 * 180.31556 * 22 20 19 24 24 C 1.53002 * 117.49992 * 8.76965 * 23 22 20 25 25 C 1.52996 * 117.50111 * 300.14241 * 23 22 20 26 26 C 1.46933 * 118.73823 * 53.86196 * 14 13 12 27 27 C 1.53035 * 109.44852 * 60.05668 * 11 2 1 28 28 H 1.09000 * 109.46568 * 270.71731 * 1 2 3 29 29 H 1.08991 * 109.47347 * 30.72283 * 1 2 3 30 30 H 1.09006 * 109.46784 * 150.72488 * 1 2 3 31 31 H 0.96999 * 120.00048 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46794 * 180.02562 * 11 2 1 33 33 H 1.09000 * 109.50162 * 61.41790 * 12 11 2 34 34 H 1.09002 * 109.49860 * 301.32005 * 12 11 2 35 35 H 1.08994 * 109.58581 * 185.57782 * 13 12 11 36 36 H 1.09003 * 109.70233 * 65.22009 * 13 12 11 37 37 H 1.08000 * 126.83600 * 0.02562 * 18 17 15 38 38 H 1.07996 * 125.57508 * 179.97438 * 19 18 17 39 39 H 1.09004 * 115.54706 * 154.47534 * 23 22 20 40 40 H 1.08999 * 117.49564 * 359.97438 * 24 23 22 41 41 H 1.08998 * 117.49949 * 145.02145 * 24 23 22 42 42 H 1.08991 * 117.50308 * 214.97865 * 25 23 22 43 43 H 1.09004 * 117.49822 * 0.02562 * 25 23 22 44 44 H 1.09003 * 109.58295 * 65.92235 * 26 14 13 45 45 H 1.08991 * 109.58721 * 186.34812 * 26 14 13 46 46 H 1.09005 * 109.50370 * 298.58026 * 27 11 2 47 47 H 1.09006 * 109.49986 * 58.67044 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1579 1.2275 -0.3849 5 6 1.5478 2.3348 0.4948 6 7 0.4616 2.2433 1.2325 7 14 2.2794 4.0108 0.1138 8 1 3.4912 3.8421 -0.7280 9 1 1.2803 4.8329 -0.6151 10 1 2.6487 4.6897 1.3818 11 6 2.1977 -1.2686 -0.0006 12 6 1.8278 -2.0715 1.2488 13 6 2.6212 -3.3819 1.2622 14 7 2.3846 -4.0910 -0.0027 15 6 1.9583 -5.3695 -0.0039 16 8 1.6769 -5.9177 1.0448 17 6 1.8274 -6.1009 -1.2753 18 6 2.7731 -6.0958 -2.3966 19 6 2.2474 -6.8993 -3.3383 20 7 1.0599 -7.3940 -2.8832 21 1 0.4856 -7.9992 -3.3778 22 6 0.8025 -6.9269 -1.6467 23 6 -0.4104 -7.2555 -0.8150 24 6 -1.3416 -8.3559 -1.3278 25 6 -1.7808 -6.8916 -1.3896 26 6 2.6275 -3.3817 -1.2663 27 6 1.8288 -2.0695 -1.2513 28 1 -0.3632 0.0129 1.0276 29 1 -0.3633 0.8833 -0.5250 30 1 -0.3633 -0.8965 -0.5026 31 1 0.0409 3.0461 1.5780 32 1 3.2692 -1.0693 0.0000 33 1 0.7605 -2.2926 1.2364 34 1 2.0692 -1.4908 2.1391 35 1 2.2899 -4.0011 2.0957 36 1 3.6846 -3.1666 1.3671 37 1 3.7059 -5.5545 -2.4545 38 1 2.6924 -7.1175 -4.2979 39 1 -0.2781 -7.1699 0.2636 40 1 -1.0771 -8.8418 -2.2670 41 1 -1.8221 -8.9945 -0.5866 42 1 -2.5502 -6.5669 -0.6892 43 1 -1.8052 -6.4147 -2.3695 44 1 3.6911 -3.1641 -1.3646 45 1 2.3004 -4.0008 -2.1015 46 1 0.7614 -2.2906 -1.2402 47 1 2.0708 -1.4875 -2.1406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985605317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:31 Heat of formation + Delta-G solvation = 43.477021 kcal Electronic energy + Delta-G solvation = -27232.695957 eV Core-core repulsion = 23609.954293 eV Total energy + Delta-G solvation = -3622.741664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34367 -40.68023 -38.76316 -37.80113 -36.60581 -33.94932 -32.68469 -31.52218 -31.15558 -30.06080 -28.02007 -26.61399 -24.78441 -24.05488 -23.50666 -23.36447 -22.44351 -21.43133 -20.71051 -19.27590 -18.72437 -18.68752 -17.48093 -16.88130 -16.67941 -16.30846 -16.09597 -15.72934 -15.21672 -15.12435 -15.05460 -14.89486 -14.64182 -14.44556 -14.13109 -13.88533 -13.62919 -13.25760 -13.12017 -13.03693 -12.82574 -12.77853 -12.61159 -12.51083 -12.34726 -12.17617 -12.02013 -11.81381 -11.71623 -11.58178 -11.40644 -11.21445 -10.86754 -10.59633 -9.72056 -9.52324 -8.98556 -8.73165 -7.81326 -5.28967 0.84746 1.47555 1.48886 1.58563 1.59558 1.96599 2.32758 2.43295 2.53242 2.94821 3.32380 3.53145 3.61386 3.78814 3.85486 3.98470 4.02572 4.18702 4.23116 4.26088 4.34616 4.40844 4.41201 4.60136 4.62719 4.66357 4.76123 4.85092 4.87854 4.90096 4.93132 4.96122 5.03774 5.09080 5.12366 5.14208 5.21596 5.23868 5.40183 5.52342 5.62281 5.68621 5.71454 5.82782 6.04069 6.36369 6.54585 6.69371 7.16935 7.29197 7.89783 8.36568 9.23113 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.003097 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.369105 B = 9039.720280 C = 9262.469229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.609 5.609 3 C -0.261 4.261 4 H 0.074 0.926 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.968 3.032 8 H -0.262 1.262 9 H -0.293 1.293 10 H -0.295 1.295 11 C 0.174 3.826 12 C -0.129 4.129 13 C 0.124 3.876 14 N -0.601 5.601 15 C 0.586 3.414 16 O -0.596 6.596 17 C -0.251 4.251 18 C -0.186 4.186 19 C 0.008 3.992 20 N -0.538 5.538 21 H 0.429 0.571 22 C 0.119 3.881 23 C -0.123 4.123 24 C -0.151 4.151 25 C -0.167 4.167 26 C 0.117 3.883 27 C -0.132 4.132 28 H -0.008 1.008 29 H 0.017 0.983 30 H 0.023 0.977 31 H 0.246 0.754 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.212 0.788 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.045 0.955 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -22.807 -13.268 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.331 5.331 3 C -0.391 4.391 4 H 0.092 0.908 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.187 1.187 9 H -0.220 1.220 10 H -0.222 1.222 11 C 0.067 3.933 12 C -0.170 4.170 13 C 0.000 4.000 14 N -0.333 5.333 15 C 0.378 3.622 16 O -0.479 6.479 17 C -0.261 4.261 18 C -0.209 4.209 19 C -0.120 4.120 20 N -0.135 5.135 21 H 0.269 0.731 22 C 0.001 3.999 23 C -0.143 4.143 24 C -0.188 4.188 25 C -0.204 4.204 26 C -0.005 4.005 27 C -0.172 4.172 28 H 0.011 0.989 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.176 0.824 38 H 0.229 0.771 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.104 0.896 45 H 0.128 0.872 46 H 0.064 0.936 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.260 -23.019 -12.779 26.359 hybrid contribution -0.304 1.321 0.564 1.468 sum 0.956 -21.699 -12.215 24.919 Atomic orbital electron populations 1.20356 0.83562 0.95781 0.96518 1.44195 1.01650 1.01452 1.85821 1.19630 0.99456 0.86728 1.33271 0.90792 1.25816 0.99066 1.02020 0.98076 1.70259 1.23642 1.27683 1.37046 0.85196 0.77990 0.80094 0.77118 1.18651 1.22000 1.22245 1.20529 0.95536 0.84675 0.92522 1.22258 0.99060 0.95551 1.00098 1.21484 1.00008 0.92045 0.86438 1.48039 1.65736 1.11494 1.07983 1.17967 0.74965 0.80907 0.88365 1.90684 1.52971 1.69245 1.34970 1.20034 1.01119 1.08166 0.96821 1.22219 1.01179 1.05170 0.92375 1.22324 0.87449 1.00584 1.01630 1.41447 1.19807 1.39214 1.13036 0.73120 1.19152 0.96232 0.97380 0.87180 1.20636 0.87811 1.07545 0.98280 1.23123 1.00746 0.91190 1.03767 1.23117 0.95444 0.98867 1.03020 1.22101 1.00462 0.92303 0.85666 1.22342 0.99690 0.95995 0.99188 0.98938 0.96430 0.95837 0.94449 0.91708 0.94397 0.92926 0.90788 0.89954 0.82445 0.77107 0.87765 0.86768 0.86969 0.88059 0.87948 0.89628 0.87207 0.93607 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.43 8.08 127.77 1.03 10.46 16 2 N -0.61 -30.80 2.80 -702.64 -1.97 -32.76 16 3 C -0.26 -14.32 9.55 84.03 0.80 -13.52 16 4 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 5 C -0.05 -3.10 5.01 84.86 0.42 -2.68 16 6 N -0.94 -56.94 10.97 21.65 0.24 -56.71 16 7 Si 0.97 45.33 29.58 68.60 2.03 47.36 16 8 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 C 0.17 7.03 2.55 45.02 0.11 7.15 16 12 C -0.13 -5.11 5.34 30.67 0.16 -4.95 16 13 C 0.12 4.13 6.44 86.36 0.56 4.69 16 14 N -0.60 -18.83 2.97 -822.10 -2.44 -21.26 16 15 C 0.59 19.68 7.42 86.62 0.64 20.33 16 16 O -0.60 -24.07 15.35 -4.13 -0.06 -24.14 16 17 C -0.25 -6.64 5.22 -19.04 -0.10 -6.74 16 18 C -0.19 -3.48 8.75 23.62 0.21 -3.27 16 19 C 0.01 0.10 11.89 83.12 0.99 1.09 16 20 N -0.54 -7.16 5.80 -182.72 -1.06 -8.22 16 21 H 0.43 2.74 7.84 -92.71 -0.73 2.01 16 22 C 0.12 2.61 6.69 41.78 0.28 2.89 16 23 C -0.12 -2.69 5.94 -11.54 -0.07 -2.76 16 24 C -0.15 -1.99 10.13 30.60 0.31 -1.68 16 25 C -0.17 -2.83 10.23 30.60 0.31 -2.51 16 26 C 0.12 3.07 5.71 86.51 0.49 3.57 16 27 C -0.13 -4.37 5.33 30.82 0.16 -4.20 16 28 H -0.01 -0.44 7.57 -2.39 -0.02 -0.46 16 29 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 30 H 0.02 1.06 6.46 -2.38 -0.02 1.05 16 31 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.06 2.58 7.87 -2.39 -0.02 2.56 16 33 H 0.04 1.62 7.72 -2.39 -0.02 1.60 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 2.65 6.99 -2.39 -0.02 2.63 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 37 H 0.16 2.49 7.68 -2.91 -0.02 2.47 16 38 H 0.21 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.10 2.99 7.09 -2.39 -0.02 2.97 16 40 H 0.11 0.88 7.08 -2.39 -0.02 0.86 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.11 2.53 4.85 -2.39 -0.01 2.51 16 46 H 0.05 1.65 6.72 -2.38 -0.02 1.63 16 47 H 0.08 2.47 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -75.54 369.35 3.31 -72.23 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.25 Total: 15.65 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.32 Total: 7.86 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -5.23 Total: -118.95 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.06 Total: -24.14 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.54 3.31 -72.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985605317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.702 kcal (2) G-P(sol) polarization free energy of solvation -75.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds