Wall clock time and date at job start Tue Mar 31 2020 11:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36935 * 119.99836 * 2 1 4 4 H 1.07997 * 120.00034 * 208.31240 * 3 2 1 5 5 C 1.38812 * 120.00068 * 28.30618 * 3 2 1 6 6 N 1.31621 * 120.00147 * 8.11325 * 5 3 2 7 7 Si 1.86799 * 119.99905 * 188.11865 * 5 3 2 8 8 H 1.48499 * 109.47695 * 59.99680 * 7 5 3 9 9 H 1.48504 * 109.47120 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47118 * 299.99496 * 7 5 3 11 11 C 1.46498 * 120.00006 * 180.02562 * 2 1 3 12 12 C 1.53036 * 109.46366 * 59.99824 * 11 2 1 13 13 C 1.53185 * 109.31586 * 178.61358 * 12 11 2 14 14 N 1.46929 * 108.77558 * 54.63686 * 13 12 11 15 15 C 1.34771 * 120.63226 * 126.37055 * 14 13 12 16 16 O 1.21626 * 119.99923 * 4.25603 * 15 14 13 17 17 C 1.47269 * 119.99651 * 183.97857 * 15 14 13 18 18 C 1.36765 * 126.94562 * 311.76161 * 17 15 14 19 19 N 1.34656 * 108.39766 * 179.97438 * 18 17 15 20 20 H 0.97003 * 124.84999 * 180.02562 * 19 18 17 21 21 C 1.36447 * 110.29837 * 0.02562 * 19 18 17 22 22 C 1.34490 * 108.85486 * 359.74808 * 21 19 18 23 23 C 1.50705 * 126.83350 * 180.23107 * 22 21 19 24 24 C 1.53003 * 117.49771 * 8.79604 * 23 22 21 25 25 C 1.52996 * 59.99977 * 252.51034 * 24 23 22 26 26 C 1.46930 * 118.73380 * 306.64295 * 14 13 12 27 27 C 1.52752 * 109.00932 * 53.31234 * 26 14 13 28 28 H 1.09003 * 109.46783 * 265.36574 * 1 2 3 29 29 H 1.08995 * 109.47363 * 25.36820 * 1 2 3 30 30 H 1.08996 * 109.46873 * 145.37120 * 1 2 3 31 31 H 0.96995 * 120.00246 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.44822 * 179.97438 * 11 2 1 33 33 H 1.08998 * 109.49984 * 58.65759 * 12 11 2 34 34 H 1.09007 * 109.49797 * 298.56703 * 12 11 2 35 35 H 1.09005 * 109.58680 * 294.84726 * 13 12 11 36 36 H 1.09001 * 109.70681 * 174.48836 * 13 12 11 37 37 H 1.08006 * 125.79987 * 359.95337 * 18 17 15 38 38 H 1.07994 * 125.57282 * 180.02562 * 21 19 18 39 39 H 1.08994 * 115.54843 * 154.50164 * 23 22 21 40 40 H 1.09003 * 117.49957 * 0.02562 * 24 23 22 41 41 H 1.08993 * 117.49778 * 145.02043 * 24 23 22 42 42 H 1.08993 * 117.50180 * 252.50709 * 25 24 23 43 43 H 1.09007 * 117.49809 * 107.48842 * 25 24 23 44 44 H 1.08999 * 109.58573 * 173.14802 * 26 14 13 45 45 H 1.08998 * 109.58946 * 293.56723 * 26 14 13 46 46 H 1.09000 * 109.56992 * 185.55205 * 27 26 14 47 47 H 1.08998 * 109.36201 * 65.49712 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1328 1.2419 -0.4436 5 6 1.5801 2.3162 0.5700 6 7 0.4573 2.2160 1.2495 7 14 2.4071 3.9795 0.3727 8 1 2.5046 4.3159 -1.0704 9 1 1.6053 5.0168 1.0702 10 1 3.7691 3.9281 0.9621 11 6 2.1976 -1.2687 -0.0006 12 6 1.8277 -2.0705 -1.2505 13 6 2.6213 -3.3807 -1.2653 14 7 2.3850 -4.0910 -0.0010 15 6 1.9581 -5.3693 -0.0009 16 8 1.8388 -5.9706 -1.0514 17 6 1.6418 -6.0398 1.2716 18 6 2.4128 -6.0658 2.4009 19 7 1.7670 -6.7831 3.3399 20 1 2.1009 -6.9530 4.2346 21 6 0.5758 -7.2368 2.8530 22 6 0.4337 -6.8103 1.5854 23 6 -0.7332 -7.0742 0.6689 24 6 -1.9736 -7.7326 1.2761 25 6 -1.0611 -8.5331 0.3448 26 6 2.6173 -3.3792 1.2632 27 6 1.8290 -2.0708 1.2496 28 1 -0.3633 -0.0830 1.0244 29 1 -0.3634 0.9285 -0.4403 30 1 -0.3633 -0.8456 -0.5840 31 1 0.0591 3.0058 1.6475 32 1 3.2691 -1.0691 -0.0009 33 1 2.0688 -1.4890 -2.1403 34 1 0.7604 -2.2918 -1.2382 35 1 3.6843 -3.1629 -1.3689 36 1 2.2922 -4.0004 -2.0994 37 1 3.3760 -5.5919 2.5193 38 1 -0.1383 -7.8362 3.3980 39 1 -0.8889 -6.3365 -0.1182 40 1 -1.9459 -7.9745 2.3386 41 1 -2.9457 -7.4280 0.8886 42 1 -1.4329 -8.7552 -0.6554 43 1 -0.4328 -9.3021 0.7945 44 1 2.2833 -3.9968 2.0970 45 1 3.6799 -3.1612 1.3700 46 1 2.0712 -1.4894 2.1393 47 1 0.7618 -2.2921 1.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985736482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:36 Heat of formation + Delta-G solvation = 65.128308 kcal Electronic energy + Delta-G solvation = -27184.590951 eV Core-core repulsion = 23562.788157 eV Total energy + Delta-G solvation = -3621.802794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41425 -39.40813 -37.27003 -37.03616 -34.91445 -32.25910 -31.29000 -30.43094 -29.69874 -28.85840 -25.94125 -25.06712 -23.38461 -23.04109 -22.59388 -22.38274 -21.25881 -19.82308 -19.00481 -18.58816 -17.73756 -16.72150 -16.38860 -15.53359 -15.31367 -14.97146 -14.86643 -14.37343 -14.12970 -13.93640 -13.84598 -13.53866 -13.35043 -13.06395 -12.90401 -12.37710 -12.22815 -12.03925 -11.68163 -11.60173 -11.50281 -11.40136 -10.92848 -10.86052 -10.79922 -10.73434 -10.36657 -10.32633 -10.20053 -10.03524 -9.86452 -9.64352 -9.49706 -8.59616 -8.49055 -8.28465 -8.25284 -6.63391 -5.72149 -3.20757 1.90987 2.27130 3.04600 3.13820 3.38837 3.44259 3.44949 3.53907 3.99753 4.49894 4.55615 4.81935 4.86106 4.96079 5.00469 5.07786 5.25406 5.35238 5.37161 5.46678 5.55181 5.55766 5.61029 5.63469 5.76674 5.79980 5.85084 5.95967 6.01643 6.04744 6.15495 6.23358 6.28331 6.36910 6.51542 6.58778 6.63245 6.78897 6.81560 6.92268 7.06420 7.10283 7.31157 7.43080 7.74131 7.74644 7.82494 8.47314 8.51515 9.27560 9.90000 10.42918 11.33981 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003095 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.753908 B = 9044.782245 C = 9113.333902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.594 5.594 3 C -0.256 4.256 4 H 0.064 0.936 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.146 4.146 13 C 0.117 3.883 14 N -0.602 5.602 15 C 0.589 3.411 16 O -0.548 6.548 17 C -0.205 4.205 18 C 0.037 3.963 19 N -0.551 5.551 20 H 0.417 0.583 21 C -0.019 4.019 22 C -0.084 4.084 23 C -0.074 4.074 24 C -0.180 4.180 25 C -0.169 4.169 26 C 0.102 3.898 27 C -0.144 4.144 28 H 0.016 0.984 29 H 0.052 0.948 30 H -0.006 1.006 31 H 0.253 0.747 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.174 0.826 38 H 0.166 0.834 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 -19.929 5.025 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.316 5.316 3 C -0.386 4.386 4 H 0.082 0.918 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.186 4.186 13 C -0.006 4.006 14 N -0.334 5.334 15 C 0.378 3.622 16 O -0.426 6.426 17 C -0.215 4.215 18 C -0.098 4.098 19 N -0.146 5.146 20 H 0.253 0.747 21 C -0.147 4.147 22 C -0.091 4.091 23 C -0.093 4.093 24 C -0.217 4.217 25 C -0.206 4.206 26 C -0.021 4.021 27 C -0.184 4.184 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.013 0.987 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.191 0.809 38 H 0.183 0.817 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.123 -20.095 4.678 20.663 hybrid contribution 0.504 1.083 0.556 1.318 sum 1.627 -19.012 5.234 19.786 Atomic orbital electron populations 1.20696 0.83013 0.96964 0.97380 1.43882 1.01642 1.00162 1.85901 1.19156 1.01472 0.86778 1.31207 0.91783 1.25142 0.97893 0.98807 0.97511 1.70028 1.19963 1.28258 1.36850 0.86357 0.78727 0.83858 0.77675 1.21042 1.21685 1.20953 1.20308 0.95880 0.86058 0.90654 1.22446 1.00270 0.94834 1.01054 1.21614 0.99589 0.93468 0.85899 1.48048 1.65986 1.11534 1.07857 1.17471 0.76043 0.80839 0.87863 1.90738 1.53958 1.64867 1.33062 1.20237 0.98146 1.08561 0.94579 1.21869 0.99468 1.00005 0.88442 1.41408 1.16793 1.42296 1.14065 0.74658 1.21391 0.90500 1.07016 0.95779 1.19539 0.94740 1.01349 0.93479 1.20219 0.92746 0.96310 0.99984 1.22995 0.94890 1.04836 0.98975 1.22964 1.02956 0.94193 1.00506 1.21942 0.99888 0.94520 0.85770 1.22377 1.00074 0.94431 1.01519 0.96580 0.92959 0.98750 0.93722 0.92044 0.90998 0.92061 0.91905 0.89685 0.80922 0.81684 0.87180 0.89001 0.88634 0.88735 0.88962 0.89740 0.91835 0.90821 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 8.10 59.85 0.48 4.57 16 2 N -0.59 -14.73 2.80 -173.44 -0.49 -15.22 16 3 C -0.26 -6.96 9.52 -15.06 -0.14 -7.11 16 4 H 0.06 1.70 7.84 -52.49 -0.41 1.29 16 5 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 6 N -0.91 -26.29 10.84 55.49 0.60 -25.69 16 7 Si 0.90 21.67 29.56 -169.99 -5.03 16.64 16 8 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.18 3.59 2.56 -67.89 -0.17 3.42 16 12 C -0.15 -2.61 5.30 -26.62 -0.14 -2.75 16 13 C 0.12 1.84 6.42 -3.71 -0.02 1.81 16 14 N -0.60 -9.31 2.98 -174.36 -0.52 -9.83 16 15 C 0.59 9.72 7.54 -12.59 -0.09 9.63 16 16 O -0.55 -10.71 16.54 5.25 0.09 -10.63 16 17 C -0.20 -2.83 5.36 -103.35 -0.55 -3.38 16 18 C 0.04 0.37 9.52 -16.85 -0.16 0.21 16 19 N -0.55 -4.35 5.90 -12.85 -0.08 -4.43 16 20 H 0.42 1.75 8.96 -40.82 -0.37 1.38 16 21 C -0.02 -0.18 11.26 -16.82 -0.19 -0.37 16 22 C -0.08 -1.08 6.02 -102.54 -0.62 -1.69 16 23 C -0.07 -0.93 6.24 -91.77 -0.57 -1.50 16 24 C -0.18 -1.71 10.02 -26.73 -0.27 -1.98 16 25 C -0.17 -1.76 10.23 -26.73 -0.27 -2.03 16 26 C 0.10 1.43 5.81 -3.94 -0.02 1.41 16 27 C -0.14 -2.57 5.32 -26.84 -0.14 -2.71 16 28 H 0.02 0.42 7.79 -51.93 -0.40 0.02 16 29 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 30 H -0.01 -0.13 6.48 -51.93 -0.34 -0.47 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.24 7.89 -51.93 -0.41 0.83 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.17 6.75 -51.93 -0.35 0.82 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.39 7.03 -51.93 -0.36 1.02 16 37 H 0.17 1.34 7.47 -52.48 -0.39 0.94 16 38 H 0.17 1.10 7.16 -52.49 -0.38 0.73 16 39 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.09 0.73 7.00 -51.93 -0.36 0.37 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.08 1.05 4.51 -51.93 -0.23 0.81 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -33.48 371.26 -10.09 -43.57 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.29 Total: 2.38 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.98 Total: -2.41 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.48 Total: -55.15 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.48 -10.09 -43.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985736482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.702 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds