Wall clock time and date at job start Tue Mar 31 2020 11:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36935 * 119.99836 * 2 1 4 4 H 1.07997 * 120.00034 * 208.31240 * 3 2 1 5 5 C 1.38812 * 120.00068 * 28.30618 * 3 2 1 6 6 N 1.31621 * 120.00147 * 8.11325 * 5 3 2 7 7 Si 1.86799 * 119.99905 * 188.11865 * 5 3 2 8 8 H 1.48499 * 109.47695 * 59.99680 * 7 5 3 9 9 H 1.48504 * 109.47120 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47118 * 299.99496 * 7 5 3 11 11 C 1.46498 * 120.00006 * 180.02562 * 2 1 3 12 12 C 1.53036 * 109.46366 * 59.99824 * 11 2 1 13 13 C 1.53185 * 109.31586 * 178.61358 * 12 11 2 14 14 N 1.46929 * 108.77558 * 54.63686 * 13 12 11 15 15 C 1.34771 * 120.63226 * 126.37055 * 14 13 12 16 16 O 1.21626 * 119.99923 * 4.25603 * 15 14 13 17 17 C 1.47269 * 119.99651 * 183.97857 * 15 14 13 18 18 C 1.36765 * 126.94562 * 311.76161 * 17 15 14 19 19 N 1.34656 * 108.39766 * 179.97438 * 18 17 15 20 20 H 0.97003 * 124.84999 * 180.02562 * 19 18 17 21 21 C 1.36447 * 110.29837 * 0.02562 * 19 18 17 22 22 C 1.34490 * 108.85486 * 359.74808 * 21 19 18 23 23 C 1.50705 * 126.83350 * 180.23107 * 22 21 19 24 24 C 1.53003 * 117.49771 * 8.79604 * 23 22 21 25 25 C 1.52996 * 59.99977 * 252.51034 * 24 23 22 26 26 C 1.46930 * 118.73380 * 306.64295 * 14 13 12 27 27 C 1.52752 * 109.00932 * 53.31234 * 26 14 13 28 28 H 1.09003 * 109.46783 * 265.36574 * 1 2 3 29 29 H 1.08995 * 109.47363 * 25.36820 * 1 2 3 30 30 H 1.08996 * 109.46873 * 145.37120 * 1 2 3 31 31 H 0.96995 * 120.00246 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.44822 * 179.97438 * 11 2 1 33 33 H 1.08998 * 109.49984 * 58.65759 * 12 11 2 34 34 H 1.09007 * 109.49797 * 298.56703 * 12 11 2 35 35 H 1.09005 * 109.58680 * 294.84726 * 13 12 11 36 36 H 1.09001 * 109.70681 * 174.48836 * 13 12 11 37 37 H 1.08006 * 125.79987 * 359.95337 * 18 17 15 38 38 H 1.07994 * 125.57282 * 180.02562 * 21 19 18 39 39 H 1.08994 * 115.54843 * 154.50164 * 23 22 21 40 40 H 1.09003 * 117.49957 * 0.02562 * 24 23 22 41 41 H 1.08993 * 117.49778 * 145.02043 * 24 23 22 42 42 H 1.08993 * 117.50180 * 252.50709 * 25 24 23 43 43 H 1.09007 * 117.49809 * 107.48842 * 25 24 23 44 44 H 1.08999 * 109.58573 * 173.14802 * 26 14 13 45 45 H 1.08998 * 109.58946 * 293.56723 * 26 14 13 46 46 H 1.09000 * 109.56992 * 185.55205 * 27 26 14 47 47 H 1.08998 * 109.36201 * 65.49712 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1328 1.2419 -0.4436 5 6 1.5801 2.3162 0.5700 6 7 0.4573 2.2160 1.2495 7 14 2.4071 3.9795 0.3727 8 1 2.5046 4.3159 -1.0704 9 1 1.6053 5.0168 1.0702 10 1 3.7691 3.9281 0.9621 11 6 2.1976 -1.2687 -0.0006 12 6 1.8277 -2.0705 -1.2505 13 6 2.6213 -3.3807 -1.2653 14 7 2.3850 -4.0910 -0.0010 15 6 1.9581 -5.3693 -0.0009 16 8 1.8388 -5.9706 -1.0514 17 6 1.6418 -6.0398 1.2716 18 6 2.4128 -6.0658 2.4009 19 7 1.7670 -6.7831 3.3399 20 1 2.1009 -6.9530 4.2346 21 6 0.5758 -7.2368 2.8530 22 6 0.4337 -6.8103 1.5854 23 6 -0.7332 -7.0742 0.6689 24 6 -1.9736 -7.7326 1.2761 25 6 -1.0611 -8.5331 0.3448 26 6 2.6173 -3.3792 1.2632 27 6 1.8290 -2.0708 1.2496 28 1 -0.3633 -0.0830 1.0244 29 1 -0.3634 0.9285 -0.4403 30 1 -0.3633 -0.8456 -0.5840 31 1 0.0591 3.0058 1.6475 32 1 3.2691 -1.0691 -0.0009 33 1 2.0688 -1.4890 -2.1403 34 1 0.7604 -2.2918 -1.2382 35 1 3.6843 -3.1629 -1.3689 36 1 2.2922 -4.0004 -2.0994 37 1 3.3760 -5.5919 2.5193 38 1 -0.1383 -7.8362 3.3980 39 1 -0.8889 -6.3365 -0.1182 40 1 -1.9459 -7.9745 2.3386 41 1 -2.9457 -7.4280 0.8886 42 1 -1.4329 -8.7552 -0.6554 43 1 -0.4328 -9.3021 0.7945 44 1 2.2833 -3.9968 2.0970 45 1 3.6799 -3.1612 1.3700 46 1 2.0712 -1.4894 2.1393 47 1 0.7618 -2.2921 1.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985736482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:35 Heat of formation + Delta-G solvation = 45.242459 kcal Electronic energy + Delta-G solvation = -27185.453266 eV Core-core repulsion = 23562.788157 eV Total energy + Delta-G solvation = -3622.665109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25210 -40.65886 -38.76789 -37.88049 -36.61305 -33.96045 -32.57408 -31.62897 -31.21239 -29.79194 -28.01385 -26.56446 -24.51854 -24.16497 -24.01462 -23.18496 -22.64042 -20.96810 -20.21513 -19.44546 -18.90179 -18.66863 -17.63518 -16.93417 -16.57664 -16.33236 -15.95808 -15.72069 -15.22036 -15.17414 -15.00510 -14.90113 -14.72256 -14.42672 -14.31523 -13.86828 -13.73658 -13.18589 -13.04220 -13.01375 -12.77495 -12.62344 -12.54799 -12.35186 -12.34044 -12.22644 -12.04123 -11.84868 -11.68769 -11.56113 -11.24130 -11.19457 -10.86794 -10.58227 -9.66399 -9.35840 -9.05072 -8.66940 -7.82232 -5.33358 1.00356 1.45444 1.48149 1.50386 1.56657 1.92920 2.30058 2.51090 2.54618 3.16376 3.33403 3.62991 3.74425 3.82665 3.96136 4.04093 4.16770 4.21280 4.23506 4.28428 4.31854 4.35997 4.41084 4.59150 4.65787 4.77638 4.79543 4.81727 4.84940 4.86381 4.94490 5.00861 5.04227 5.11145 5.18027 5.23240 5.29296 5.34812 5.41876 5.51118 5.61488 5.67610 5.70155 5.79029 6.01383 6.39009 6.52760 6.75007 7.18067 7.28798 7.89112 8.37765 9.22641 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003095 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.753908 B = 9044.782245 C = 9113.333902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.610 5.610 3 C -0.265 4.265 4 H 0.070 0.930 5 C -0.049 4.049 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.280 1.280 9 H -0.296 1.296 10 H -0.272 1.272 11 C 0.175 3.825 12 C -0.132 4.132 13 C 0.123 3.877 14 N -0.603 5.603 15 C 0.587 3.413 16 O -0.591 6.591 17 C -0.254 4.254 18 C 0.056 3.944 19 N -0.532 5.532 20 H 0.439 0.561 21 C -0.002 4.002 22 C -0.119 4.119 23 C -0.103 4.103 24 C -0.158 4.158 25 C -0.167 4.167 26 C 0.113 3.887 27 C -0.132 4.132 28 H -0.007 1.007 29 H 0.023 0.977 30 H 0.013 0.987 31 H 0.248 0.752 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.201 0.799 38 H 0.198 0.802 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 -21.409 7.024 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.332 5.332 3 C -0.396 4.396 4 H 0.088 0.912 5 C -0.244 4.244 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.206 1.206 9 H -0.223 1.223 10 H -0.198 1.198 11 C 0.068 3.932 12 C -0.172 4.172 13 C 0.000 4.000 14 N -0.334 5.334 15 C 0.378 3.622 16 O -0.472 6.472 17 C -0.264 4.264 18 C -0.081 4.081 19 N -0.127 5.127 20 H 0.279 0.721 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.195 4.195 25 C -0.204 4.204 26 C -0.009 4.009 27 C -0.172 4.172 28 H 0.012 0.988 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.218 0.782 38 H 0.215 0.785 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.763 -21.605 6.709 22.790 hybrid contribution -0.016 1.490 -0.095 1.493 sum 2.748 -20.114 6.614 21.351 Atomic orbital electron populations 1.20358 0.83718 0.96100 0.95958 1.44102 1.01545 1.01423 1.86122 1.19522 1.01630 0.87878 1.30531 0.91195 1.25895 0.98616 1.02223 0.97682 1.70197 1.21430 1.28704 1.38114 0.85325 0.77965 0.79462 0.77550 1.20609 1.22270 1.19792 1.20514 0.95564 0.84697 0.92442 1.22255 0.99394 0.95703 0.99860 1.21510 1.00318 0.91918 0.86237 1.48114 1.65794 1.11478 1.08059 1.17958 0.74903 0.80841 0.88531 1.90698 1.55692 1.65896 1.34928 1.20231 1.00288 1.11156 0.94745 1.22160 0.99652 0.98865 0.87390 1.41438 1.15943 1.40674 1.14649 0.72051 1.21759 0.90980 1.05734 0.94577 1.19741 0.94806 1.02921 0.95042 1.20126 0.95044 0.96627 1.00431 1.23096 0.93831 1.02499 1.00056 1.23014 1.03268 0.93250 1.00911 1.21964 1.00721 0.92391 0.85860 1.22169 0.99367 0.96050 0.99628 0.98837 0.95772 0.96915 0.94324 0.91575 0.91300 0.93991 0.89663 0.90534 0.78187 0.78511 0.90997 0.86622 0.88301 0.89044 0.88006 0.87559 0.89093 0.92025 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.48 8.10 127.77 1.04 10.52 16 2 N -0.61 -30.65 2.80 -702.63 -1.97 -32.61 16 3 C -0.27 -14.47 9.52 84.03 0.80 -13.67 16 4 H 0.07 3.66 7.84 -2.91 -0.02 3.64 16 5 C -0.05 -2.73 5.12 84.86 0.43 -2.29 16 6 N -0.94 -55.66 10.84 21.65 0.23 -55.43 16 7 Si 0.97 44.71 29.56 68.60 2.03 46.74 16 8 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 9 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 C 0.17 6.95 2.56 45.02 0.12 7.06 16 12 C -0.13 -4.74 5.30 30.67 0.16 -4.58 16 13 C 0.12 3.81 6.42 86.36 0.55 4.37 16 14 N -0.60 -18.16 2.98 -823.80 -2.45 -20.61 16 15 C 0.59 19.41 7.54 86.62 0.65 20.06 16 16 O -0.59 -23.93 16.54 -4.11 -0.07 -24.00 16 17 C -0.25 -6.73 5.36 -19.04 -0.10 -6.83 16 18 C 0.06 0.95 9.52 83.91 0.80 1.75 16 19 N -0.53 -6.22 5.90 -194.56 -1.15 -7.37 16 20 H 0.44 1.53 8.96 -92.71 -0.83 0.69 16 21 C 0.00 -0.02 11.26 83.12 0.94 0.91 16 22 C -0.12 -2.90 6.02 -18.51 -0.11 -3.02 16 23 C -0.10 -2.64 6.24 -11.54 -0.07 -2.71 16 24 C -0.16 -2.80 10.02 30.59 0.31 -2.49 16 25 C -0.17 -3.40 10.23 30.59 0.31 -3.09 16 26 C 0.11 2.93 5.81 86.21 0.50 3.44 16 27 C -0.13 -4.65 5.32 30.53 0.16 -4.49 16 28 H -0.01 -0.37 7.79 -2.39 -0.02 -0.39 16 29 H 0.02 1.34 6.92 -2.39 -0.02 1.32 16 30 H 0.01 0.59 6.48 -2.39 -0.02 0.57 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.07 2.57 7.89 -2.39 -0.02 2.56 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.04 1.65 6.75 -2.38 -0.02 1.63 16 35 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.08 2.54 7.03 -2.39 -0.02 2.52 16 37 H 0.20 2.18 7.47 -2.91 -0.02 2.16 16 38 H 0.20 1.70 7.16 -2.91 -0.02 1.68 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.12 1.47 7.00 -2.39 -0.02 1.45 16 41 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.11 2.34 4.51 -2.39 -0.01 2.33 16 45 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.04 1.48 7.72 -2.39 -0.02 1.46 16 Total: -1.00 -76.20 371.26 3.27 -72.94 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.15 Total: 15.40 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 6.49 Total: 4.94 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -5.33 Total: -116.02 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.07 Total: -24.00 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.20 3.27 -72.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985736482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.178 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds