Wall clock time and date at job start Tue Mar 31 2020 11:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99746 * 2 1 4 4 C 1.39050 * 120.00174 * 180.02562 * 2 1 3 5 5 C 1.39212 * 119.92748 * 359.97438 * 4 2 1 6 6 C 1.37615 * 120.06707 * 180.02562 * 5 4 2 7 7 C 1.39792 * 119.92807 * 359.97438 * 6 5 4 8 8 C 1.47527 * 120.06692 * 179.97438 * 7 6 5 9 9 O 1.21600 * 119.99960 * 322.83852 * 8 7 6 10 10 N 1.34777 * 119.99991 * 142.83779 * 8 7 6 11 11 C 1.48215 * 119.97075 * 5.81087 * 10 8 7 12 12 C 1.47134 * 110.34501 * 102.46056 * 11 10 8 13 13 C 1.53245 * 111.81160 * 58.22849 * 12 11 10 14 14 N 1.43457 * 108.26243 * 281.67628 * 13 12 11 15 15 C 1.36946 * 118.93983 * 273.78126 * 14 13 12 16 16 H 1.07999 * 119.99946 * 25.20899 * 15 14 13 17 17 C 1.38810 * 119.99627 * 205.20475 * 15 14 13 18 18 N 1.31624 * 119.99654 * 203.51595 * 17 15 14 19 19 Si 1.86800 * 120.00375 * 23.52532 * 17 15 14 20 20 H 1.48502 * 109.46921 * 265.08465 * 19 17 15 21 21 H 1.48498 * 109.47434 * 145.07883 * 19 17 15 22 22 H 1.48502 * 109.46872 * 25.07703 * 19 17 15 23 23 C 1.48856 * 122.12120 * 93.50154 * 14 13 12 24 24 C 1.43616 * 119.96943 * 185.78679 * 10 8 7 25 25 C 1.39797 * 119.86702 * 0.25720 * 7 6 5 26 26 C 1.37610 * 119.92565 * 359.50802 * 25 7 6 27 27 H 1.09000 * 109.47046 * 269.99772 * 1 2 3 28 28 H 1.09002 * 109.47292 * 29.99943 * 1 2 3 29 29 H 1.08997 * 109.47005 * 149.99419 * 1 2 3 30 30 H 1.09003 * 109.47412 * 240.00058 * 3 2 1 31 31 H 1.09002 * 109.47375 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.46806 * 120.00426 * 3 2 1 33 33 H 1.07995 * 119.97142 * 0.02720 * 5 4 2 34 34 H 1.08000 * 120.03383 * 179.97438 * 6 5 4 35 35 H 1.08991 * 109.32077 * 222.73134 * 11 10 8 36 36 H 1.09000 * 109.32110 * 342.37047 * 11 10 8 37 37 H 1.09003 * 109.00309 * 178.90071 * 12 11 10 38 38 H 1.09002 * 109.01234 * 297.76467 * 12 11 10 39 39 H 1.08999 * 109.48871 * 162.03513 * 13 12 11 40 40 H 1.08999 * 109.73733 * 41.46112 * 13 12 11 41 41 H 0.96998 * 119.99956 * 5.12178 * 18 17 15 42 42 H 1.08999 * 109.48121 * 80.87969 * 23 14 13 43 43 H 1.09000 * 109.48360 * 200.89984 * 23 14 13 44 44 H 1.08999 * 108.87464 * 149.91355 * 24 10 8 45 45 H 1.08993 * 108.88132 * 31.47246 * 24 10 8 46 46 H 1.07994 * 120.03585 * 179.74219 * 25 7 6 47 47 H 1.07999 * 119.96548 * 180.21936 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2042 -0.0005 5 6 1.4628 -2.4089 -0.0005 6 6 2.1480 -3.6024 -0.0005 7 6 3.5459 -3.6040 -0.0011 8 6 4.2835 -4.8816 -0.0005 9 8 3.8610 -5.8273 0.6364 10 7 5.4258 -5.0005 -0.7060 11 6 6.0088 -3.8143 -1.3765 12 6 7.1472 -3.2965 -0.6014 13 6 8.2377 -4.3568 -0.4139 14 7 7.8207 -5.2513 0.6272 15 6 8.0976 -4.9281 1.9289 16 1 8.2346 -3.8947 2.2112 17 6 8.2019 -5.9287 2.8853 18 7 8.0047 -5.6476 4.1559 19 14 8.6224 -7.6740 2.3691 20 1 7.3708 -8.4549 2.1987 21 1 9.4644 -8.3100 3.4140 22 1 9.3662 -7.6446 1.0841 23 6 7.0915 -6.5165 0.3387 24 6 6.0771 -6.2765 -0.8068 25 6 4.2435 -2.3925 0.0038 26 6 3.5525 -1.2025 -0.0011 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 2.8242 1.3266 -0.8900 31 1 1.4892 2.0973 0.0005 32 1 2.8242 1.3265 0.8900 33 1 0.3828 -2.4071 -0.0006 34 1 1.6063 -4.5367 -0.0001 35 1 6.3487 -4.0944 -2.3735 36 1 5.2490 -3.0372 -1.4596 37 1 7.5708 -2.4383 -1.1231 38 1 6.7934 -2.9767 0.3787 39 1 9.1718 -3.8716 -0.1309 40 1 8.3760 -4.9108 -1.3424 41 1 7.7141 -4.7597 4.4168 42 1 7.8030 -7.2859 0.0389 43 1 6.5599 -6.8418 1.2330 44 1 6.6029 -6.3297 -1.7601 45 1 5.3215 -7.0615 -0.7788 46 1 5.3234 -2.3906 0.0076 47 1 4.0908 -0.2662 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989556216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:52 Heat of formation + Delta-G solvation = 60.587119 kcal Electronic energy + Delta-G solvation = -27844.259105 eV Core-core repulsion = 24222.259391 eV Total energy + Delta-G solvation = -3621.999714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44751 -39.05924 -37.10908 -36.14335 -34.47460 -32.56545 -31.64914 -31.06151 -30.16650 -28.40548 -27.74499 -25.84304 -25.34885 -23.13979 -22.57434 -22.18108 -21.12065 -19.83216 -19.01685 -17.51153 -17.26036 -16.78322 -16.18342 -15.66416 -15.37435 -15.25767 -14.79450 -14.48885 -14.11513 -13.95980 -13.78800 -13.42813 -13.32601 -13.12352 -12.94580 -12.83467 -12.62124 -12.46244 -12.25255 -12.10366 -11.95451 -11.90288 -11.40792 -11.09111 -10.85727 -10.74356 -10.59565 -10.22045 -9.90585 -9.82296 -9.64452 -9.28491 -9.07604 -8.85301 -8.41520 -8.08671 -7.38684 -6.86728 -6.22310 -3.19682 1.30129 1.49828 2.89726 3.22984 3.53147 3.55067 3.62210 3.76382 4.00461 4.67794 4.72018 4.73217 4.85798 4.94973 5.00316 5.03967 5.06115 5.19317 5.28955 5.37859 5.41021 5.45025 5.52478 5.55340 5.59246 5.62981 5.67625 5.75939 5.91987 6.02074 6.06276 6.15567 6.18916 6.24975 6.29969 6.37183 6.51564 6.61780 6.67004 6.76348 6.82703 6.89463 7.03556 7.19824 7.32496 7.89293 8.13491 8.56352 8.74788 9.13051 9.77721 10.24295 11.22476 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.003795 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.543302 B = 7376.628671 C = 7452.497317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.636 5.636 3 C 0.094 3.906 4 C 0.229 3.771 5 C -0.209 4.209 6 C -0.019 4.019 7 C -0.179 4.179 8 C 0.564 3.436 9 O -0.541 6.541 10 N -0.582 5.582 11 C 0.103 3.897 12 C -0.180 4.180 13 C 0.165 3.835 14 N -0.597 5.597 15 C -0.350 4.350 16 H 0.064 0.936 17 C -0.007 4.007 18 N -0.916 5.916 19 Si 1.053 2.947 20 H -0.294 1.294 21 H -0.302 1.302 22 H -0.286 1.286 23 C 0.106 3.894 24 C 0.105 3.895 25 C -0.052 4.052 26 C -0.205 4.205 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.149 0.851 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.377 12.642 -14.943 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.347 5.347 3 C -0.049 4.049 4 C 0.126 3.874 5 C -0.231 4.231 6 C -0.039 4.039 7 C -0.184 4.184 8 C 0.353 3.647 9 O -0.419 6.419 10 N -0.313 5.313 11 C -0.019 4.019 12 C -0.221 4.221 13 C 0.037 3.963 14 N -0.320 5.320 15 C -0.479 4.479 16 H 0.082 0.918 17 C -0.209 4.209 18 N -0.555 5.555 19 Si 0.884 3.116 20 H -0.221 1.221 21 H -0.230 1.230 22 H -0.213 1.213 23 C -0.020 4.020 24 C -0.021 4.021 25 C -0.071 4.071 26 C -0.227 4.227 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.166 0.834 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.354 10.805 -14.041 21.599 hybrid contribution -0.315 1.724 -0.452 1.810 sum -12.669 12.529 -14.493 22.968 Atomic orbital electron populations 1.21689 0.79540 1.02633 1.01303 1.46229 1.05095 1.03388 1.79976 1.21631 0.97042 0.84679 1.01530 1.17955 0.91322 0.85559 0.92564 1.20542 0.99501 0.90740 1.12319 1.20880 0.92478 0.97694 0.92823 1.19686 0.94054 0.93209 1.11465 1.18168 0.80389 0.87580 0.78521 1.90760 1.68945 1.40735 1.41504 1.47185 1.23172 1.09686 1.51305 1.21245 0.96668 0.88401 0.95541 1.21941 0.98593 1.00553 1.00967 1.20144 0.94233 0.90681 0.91285 1.43913 1.63200 1.21407 1.03490 1.20148 1.49630 0.94077 0.84006 0.91801 1.26098 0.97812 1.03685 0.93260 1.70847 1.44843 1.23071 1.16730 0.84018 0.76474 0.76837 0.74268 1.22145 1.22992 1.21270 1.22533 0.92580 0.89059 0.97819 1.21596 0.96202 0.85316 0.98963 1.21834 1.01415 0.90933 0.92896 1.20563 0.91792 0.98531 1.11843 0.93293 0.91601 0.91141 0.92625 0.90967 0.92533 0.85737 0.85404 0.91680 0.89190 0.92040 0.90771 0.93054 0.94640 0.92724 0.94664 0.90627 0.91796 0.90706 0.83360 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.14 59.85 0.61 1.25 16 2 N -0.64 -6.13 3.39 -187.55 -0.64 -6.77 16 3 C 0.09 0.69 9.39 59.85 0.56 1.25 16 4 C 0.23 2.83 6.55 -83.86 -0.55 2.28 16 5 C -0.21 -2.65 9.18 -39.45 -0.36 -3.01 16 6 C -0.02 -0.29 9.61 -39.23 -0.38 -0.67 16 7 C -0.18 -3.08 5.40 -104.95 -0.57 -3.64 16 8 C 0.56 11.52 7.34 -12.47 -0.09 11.43 16 9 O -0.54 -13.11 16.47 5.28 0.09 -13.02 16 10 N -0.58 -10.78 2.46 -177.90 -0.44 -11.22 16 11 C 0.10 1.53 5.04 -5.91 -0.03 1.50 16 12 C -0.18 -2.93 4.87 -29.42 -0.14 -3.07 16 13 C 0.17 3.19 5.59 -5.53 -0.03 3.16 16 14 N -0.60 -14.42 2.33 -172.35 -0.40 -14.82 16 15 C -0.35 -10.04 9.53 -15.06 -0.14 -10.19 16 16 H 0.06 1.95 8.06 -52.49 -0.42 1.52 16 17 C -0.01 -0.21 5.12 -17.43 -0.09 -0.30 16 18 N -0.92 -29.64 13.70 55.49 0.76 -28.88 16 19 Si 1.05 27.52 24.48 -169.99 -4.16 23.36 16 20 H -0.29 -7.50 6.81 56.52 0.38 -7.12 16 21 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 22 H -0.29 -6.98 6.47 56.52 0.37 -6.61 16 23 C 0.11 2.44 4.54 -1.75 -0.01 2.43 16 24 C 0.10 1.97 5.21 -4.58 -0.02 1.95 16 25 C -0.05 -0.80 7.32 -39.23 -0.29 -1.08 16 26 C -0.20 -2.67 9.28 -39.45 -0.37 -3.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 29 H 0.07 0.47 6.17 -51.93 -0.32 0.15 16 30 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 31 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16 32 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 33 H 0.12 1.27 6.11 -52.49 -0.32 0.95 16 34 H 0.13 1.86 8.03 -52.49 -0.42 1.44 16 35 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 36 H 0.09 1.21 4.27 -51.93 -0.22 0.99 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.44 6.27 -51.93 -0.33 1.12 16 39 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 40 H 0.04 0.61 7.58 -51.93 -0.39 0.22 16 41 H 0.26 8.47 8.73 -40.82 -0.36 8.12 16 42 H 0.04 0.79 5.83 -51.93 -0.30 0.48 16 43 H 0.08 2.02 5.69 -51.93 -0.30 1.73 16 44 H 0.06 1.00 7.73 -51.93 -0.40 0.60 16 45 H 0.07 1.41 7.46 -51.93 -0.39 1.02 16 46 H 0.15 2.30 3.24 -52.49 -0.17 2.13 16 47 H 0.12 1.35 6.70 -52.49 -0.35 1.00 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -36.22 353.12 -8.22 -44.44 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.86 Total: 1.33 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.90 Total: 0.26 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.71 Total: -61.68 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 27.52 SS G_CDS: -4.16 Total: 23.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.22 -8.22 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989556216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.029 kcal (2) G-P(sol) polarization free energy of solvation -36.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds