Wall clock time and date at job start Tue Mar 31 2020 11:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99746 * 2 1 4 4 C 1.39050 * 120.00174 * 180.02562 * 2 1 3 5 5 C 1.39212 * 119.92748 * 359.97438 * 4 2 1 6 6 C 1.37615 * 120.06707 * 180.02562 * 5 4 2 7 7 C 1.39792 * 119.92807 * 359.97438 * 6 5 4 8 8 C 1.47527 * 120.06692 * 179.97438 * 7 6 5 9 9 O 1.21600 * 119.99960 * 322.83852 * 8 7 6 10 10 N 1.34777 * 119.99991 * 142.83779 * 8 7 6 11 11 C 1.48215 * 119.97075 * 5.81087 * 10 8 7 12 12 C 1.47134 * 110.34501 * 102.46056 * 11 10 8 13 13 C 1.53245 * 111.81160 * 58.22849 * 12 11 10 14 14 N 1.43457 * 108.26243 * 281.67628 * 13 12 11 15 15 C 1.36946 * 118.93983 * 273.78126 * 14 13 12 16 16 H 1.07999 * 119.99946 * 25.20899 * 15 14 13 17 17 C 1.38810 * 119.99627 * 205.20475 * 15 14 13 18 18 N 1.31624 * 119.99654 * 203.51595 * 17 15 14 19 19 Si 1.86800 * 120.00375 * 23.52532 * 17 15 14 20 20 H 1.48502 * 109.46921 * 265.08465 * 19 17 15 21 21 H 1.48498 * 109.47434 * 145.07883 * 19 17 15 22 22 H 1.48502 * 109.46872 * 25.07703 * 19 17 15 23 23 C 1.48856 * 122.12120 * 93.50154 * 14 13 12 24 24 C 1.43616 * 119.96943 * 185.78679 * 10 8 7 25 25 C 1.39797 * 119.86702 * 0.25720 * 7 6 5 26 26 C 1.37610 * 119.92565 * 359.50802 * 25 7 6 27 27 H 1.09000 * 109.47046 * 269.99772 * 1 2 3 28 28 H 1.09002 * 109.47292 * 29.99943 * 1 2 3 29 29 H 1.08997 * 109.47005 * 149.99419 * 1 2 3 30 30 H 1.09003 * 109.47412 * 240.00058 * 3 2 1 31 31 H 1.09002 * 109.47375 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.46806 * 120.00426 * 3 2 1 33 33 H 1.07995 * 119.97142 * 0.02720 * 5 4 2 34 34 H 1.08000 * 120.03383 * 179.97438 * 6 5 4 35 35 H 1.08991 * 109.32077 * 222.73134 * 11 10 8 36 36 H 1.09000 * 109.32110 * 342.37047 * 11 10 8 37 37 H 1.09003 * 109.00309 * 178.90071 * 12 11 10 38 38 H 1.09002 * 109.01234 * 297.76467 * 12 11 10 39 39 H 1.08999 * 109.48871 * 162.03513 * 13 12 11 40 40 H 1.08999 * 109.73733 * 41.46112 * 13 12 11 41 41 H 0.96998 * 119.99956 * 5.12178 * 18 17 15 42 42 H 1.08999 * 109.48121 * 80.87969 * 23 14 13 43 43 H 1.09000 * 109.48360 * 200.89984 * 23 14 13 44 44 H 1.08999 * 108.87464 * 149.91355 * 24 10 8 45 45 H 1.08993 * 108.88132 * 31.47246 * 24 10 8 46 46 H 1.07994 * 120.03585 * 179.74219 * 25 7 6 47 47 H 1.07999 * 119.96548 * 180.21936 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1603 -1.2042 -0.0005 5 6 1.4628 -2.4089 -0.0005 6 6 2.1480 -3.6024 -0.0005 7 6 3.5459 -3.6040 -0.0011 8 6 4.2835 -4.8816 -0.0005 9 8 3.8610 -5.8273 0.6364 10 7 5.4258 -5.0005 -0.7060 11 6 6.0088 -3.8143 -1.3765 12 6 7.1472 -3.2965 -0.6014 13 6 8.2377 -4.3568 -0.4139 14 7 7.8207 -5.2513 0.6272 15 6 8.0976 -4.9281 1.9289 16 1 8.2346 -3.8947 2.2112 17 6 8.2019 -5.9287 2.8853 18 7 8.0047 -5.6476 4.1559 19 14 8.6224 -7.6740 2.3691 20 1 7.3708 -8.4549 2.1987 21 1 9.4644 -8.3100 3.4140 22 1 9.3662 -7.6446 1.0841 23 6 7.0915 -6.5165 0.3387 24 6 6.0771 -6.2765 -0.8068 25 6 4.2435 -2.3925 0.0038 26 6 3.5525 -1.2025 -0.0011 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 2.8242 1.3266 -0.8900 31 1 1.4892 2.0973 0.0005 32 1 2.8242 1.3265 0.8900 33 1 0.3828 -2.4071 -0.0006 34 1 1.6063 -4.5367 -0.0001 35 1 6.3487 -4.0944 -2.3735 36 1 5.2490 -3.0372 -1.4596 37 1 7.5708 -2.4383 -1.1231 38 1 6.7934 -2.9767 0.3787 39 1 9.1718 -3.8716 -0.1309 40 1 8.3760 -4.9108 -1.3424 41 1 7.7141 -4.7597 4.4168 42 1 7.8030 -7.2859 0.0389 43 1 6.5599 -6.8418 1.2330 44 1 6.6029 -6.3297 -1.7601 45 1 5.3215 -7.0615 -0.7788 46 1 5.3234 -2.3906 0.0076 47 1 4.0908 -0.2662 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989556216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:51 Heat of formation + Delta-G solvation = 35.858315 kcal Electronic energy + Delta-G solvation = -27845.331427 eV Core-core repulsion = 24222.259391 eV Total energy + Delta-G solvation = -3623.072036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76117 -40.17757 -38.73004 -37.15644 -36.19039 -34.08297 -33.64875 -32.15294 -31.34399 -29.34238 -29.05542 -27.45038 -26.40270 -24.85525 -24.03254 -23.25743 -22.20616 -21.62799 -20.33260 -19.36015 -18.55175 -18.06411 -17.47445 -17.00293 -16.61860 -16.36300 -16.05782 -15.98800 -15.62331 -15.40894 -15.08673 -14.94754 -14.70480 -14.46874 -14.23547 -13.96603 -13.70252 -13.54653 -13.41523 -13.35377 -13.29627 -12.94410 -12.77799 -12.71795 -12.35118 -12.06975 -12.01789 -11.74270 -11.60770 -11.51810 -11.31100 -10.95707 -10.67447 -10.63063 -9.93580 -9.60964 -8.94480 -8.57143 -8.28414 -5.47997 0.14599 0.43167 1.40882 1.51445 1.67049 1.84496 2.14740 2.19869 2.56776 2.84716 3.04240 3.45389 3.58417 3.80247 3.93344 4.00222 4.12192 4.16796 4.19998 4.30347 4.36906 4.42406 4.49120 4.50677 4.58603 4.61160 4.66369 4.70542 4.77111 4.85699 4.89048 4.90280 4.91516 4.94811 4.96305 5.03848 5.18251 5.20486 5.28697 5.45007 5.53547 5.69967 5.79768 5.80123 6.27039 6.28474 6.41649 6.46987 6.91008 7.25848 7.72501 8.04786 8.85653 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.003795 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.543302 B = 7376.628671 C = 7452.497317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.633 5.633 3 C 0.086 3.914 4 C 0.235 3.765 5 C -0.207 4.207 6 C -0.027 4.027 7 C -0.213 4.213 8 C 0.552 3.448 9 O -0.598 6.598 10 N -0.585 5.585 11 C 0.101 3.899 12 C -0.167 4.167 13 C 0.154 3.846 14 N -0.609 5.609 15 C -0.325 4.325 16 H 0.032 0.968 17 C -0.070 4.070 18 N -0.959 5.959 19 Si 1.095 2.905 20 H -0.292 1.292 21 H -0.309 1.309 22 H -0.251 1.251 23 C 0.102 3.898 24 C 0.108 3.892 25 C -0.056 4.056 26 C -0.206 4.206 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.150 0.850 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.245 0.755 42 H 0.052 0.948 43 H 0.027 0.973 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.144 0.856 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.104 14.724 -18.675 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.342 5.342 3 C -0.057 4.057 4 C 0.129 3.871 5 C -0.229 4.229 6 C -0.047 4.047 7 C -0.218 4.218 8 C 0.344 3.656 9 O -0.481 6.481 10 N -0.314 5.314 11 C -0.020 4.020 12 C -0.207 4.207 13 C 0.028 3.972 14 N -0.333 5.333 15 C -0.455 4.455 16 H 0.050 0.950 17 C -0.265 4.265 18 N -0.602 5.602 19 Si 0.922 3.078 20 H -0.220 1.220 21 H -0.237 1.237 22 H -0.176 1.176 23 C -0.023 4.023 24 C -0.017 4.017 25 C -0.075 4.075 26 C -0.229 4.229 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.161 0.839 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.076 12.972 -17.867 25.661 hybrid contribution -0.201 1.342 0.661 1.510 sum -13.277 14.314 -17.206 26.024 Atomic orbital electron populations 1.21929 0.77853 1.04194 1.01998 1.46579 1.06376 1.03140 1.78079 1.21857 0.97828 0.84278 1.01705 1.18107 0.91374 0.86657 0.90948 1.20753 1.00716 0.89995 1.11475 1.20939 0.91941 0.98595 0.93247 1.19573 0.94775 0.92313 1.15185 1.18847 0.80936 0.88121 0.77722 1.90709 1.70532 1.42854 1.43997 1.47416 1.22627 1.10680 1.50671 1.21506 0.96369 0.87646 0.96430 1.21759 0.98124 1.00970 0.99834 1.20460 0.94797 0.90834 0.91130 1.44011 1.63925 1.22559 1.02784 1.20057 1.46607 0.92395 0.86415 0.95026 1.27260 0.98667 1.07547 0.92988 1.70969 1.48735 1.22180 1.18318 0.83472 0.76438 0.72682 0.75197 1.21964 1.23733 1.17565 1.22530 0.93443 0.88787 0.97551 1.21549 0.95363 0.85777 0.99059 1.21769 1.01193 0.91075 0.93454 1.20750 0.92341 0.98477 1.11314 0.92964 0.88975 0.90768 0.91783 0.88333 0.92965 0.83230 0.86024 0.87766 0.87570 0.87759 0.94692 0.93853 0.90982 0.94593 0.93030 0.95423 0.87167 0.91266 0.83891 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.14 127.77 1.30 2.15 16 2 N -0.63 -10.05 3.39 -747.27 -2.53 -12.58 16 3 C 0.09 0.93 9.39 127.77 1.20 2.13 16 4 C 0.23 5.25 6.55 38.47 0.25 5.51 16 5 C -0.21 -4.94 9.18 22.36 0.21 -4.73 16 6 C -0.03 -0.84 9.61 22.50 0.22 -0.62 16 7 C -0.21 -7.43 5.40 -20.08 -0.11 -7.54 16 8 C 0.55 23.21 7.34 86.69 0.64 23.84 16 9 O -0.60 -30.67 16.47 -4.03 -0.07 -30.73 16 10 N -0.58 -21.08 2.46 -835.01 -2.05 -23.13 16 11 C 0.10 2.68 5.04 84.22 0.42 3.10 16 12 C -0.17 -5.02 4.87 28.85 0.14 -4.88 16 13 C 0.15 5.58 5.59 87.02 0.49 6.07 16 14 N -0.61 -29.13 2.33 -699.18 -1.63 -30.76 16 15 C -0.32 -19.25 9.53 84.03 0.80 -18.45 16 16 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 17 C -0.07 -4.42 5.12 84.86 0.43 -3.99 16 18 N -0.96 -65.52 13.70 21.65 0.30 -65.23 16 19 Si 1.10 57.07 24.48 68.60 1.68 58.75 16 20 H -0.29 -15.00 6.81 99.48 0.68 -14.32 16 21 H -0.31 -16.26 7.11 99.48 0.71 -15.56 16 22 H -0.25 -11.50 6.47 99.48 0.64 -10.86 16 23 C 0.10 4.65 4.54 86.56 0.39 5.04 16 24 C 0.11 3.90 5.21 87.55 0.46 4.36 16 25 C -0.06 -1.68 7.32 22.50 0.16 -1.51 16 26 C -0.21 -4.98 9.28 22.36 0.21 -4.77 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.09 0.51 7.92 -2.39 -0.02 0.49 16 29 H 0.07 0.74 6.17 -2.39 -0.01 0.72 16 30 H 0.06 0.63 7.93 -2.39 -0.02 0.61 16 31 H 0.10 0.58 7.79 -2.39 -0.02 0.56 16 32 H 0.05 0.64 7.93 -2.38 -0.02 0.62 16 33 H 0.15 2.70 6.11 -2.91 -0.02 2.68 16 34 H 0.12 3.72 8.03 -2.91 -0.02 3.70 16 35 H 0.10 2.04 8.05 -2.39 -0.02 2.02 16 36 H 0.11 2.58 4.27 -2.39 -0.01 2.57 16 37 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.03 1.35 6.27 -2.39 -0.01 1.33 16 39 H 0.04 1.63 8.02 -2.39 -0.02 1.62 16 40 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 41 H 0.25 16.94 8.73 -92.71 -0.81 16.13 16 42 H 0.05 2.17 5.83 -2.39 -0.01 2.16 16 43 H 0.03 1.52 5.69 -2.39 -0.01 1.50 16 44 H 0.11 2.96 7.73 -2.39 -0.02 2.94 16 45 H 0.07 2.59 7.46 -2.39 -0.02 2.57 16 46 H 0.14 4.35 3.24 -2.91 -0.01 4.34 16 47 H 0.15 2.78 6.70 -2.91 -0.02 2.76 16 Total: -1.00 -86.20 353.12 3.75 -82.45 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.85 Total: 15.52 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 7.20 Total: 5.71 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -5.92 Total: -131.70 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.07 Total: -30.73 kcal Atomic # 14 Polarization: 57.07 SS G_CDS: 1.68 Total: 58.75 kcal Total: -86.20 3.75 -82.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989556216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.309 kcal (2) G-P(sol) polarization free energy of solvation -86.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds