Wall clock time and date at job start Tue Mar 31 2020 11:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46508 * 120.00202 * 2 1 4 4 C 1.50694 * 109.47040 * 90.00076 * 3 2 1 5 5 O 1.21281 * 120.00374 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99596 * 180.02562 * 4 3 2 7 7 C 1.48221 * 119.96707 * 179.97438 * 6 4 3 8 8 C 1.47139 * 110.33845 * 102.51357 * 7 6 4 9 9 C 1.53799 * 111.83975 * 58.29931 * 8 7 6 10 10 N 1.43459 * 107.95808 * 281.66255 * 9 8 7 11 11 C 1.36943 * 118.94161 * 273.61253 * 10 9 8 12 12 H 1.07997 * 119.99765 * 31.82364 * 11 10 9 13 13 C 1.38815 * 119.99926 * 211.82794 * 11 10 9 14 14 N 1.31618 * 119.99504 * 198.89328 * 13 11 10 15 15 Si 1.86800 * 119.99968 * 18.88862 * 13 11 10 16 16 H 1.48506 * 109.47001 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.46969 * 60.00492 * 15 13 11 18 18 H 1.48502 * 109.47300 * 299.99995 * 15 13 11 19 19 C 1.48857 * 122.12183 * 93.89203 * 10 9 8 20 20 C 1.43613 * 119.97026 * 0.02562 * 6 4 3 21 21 C 1.39678 * 120.00236 * 179.97438 * 2 1 3 22 22 C 1.38912 * 120.07706 * 179.72127 * 21 2 1 23 23 C 1.38104 * 119.92319 * 179.76916 * 22 21 2 24 24 C 1.38289 * 120.07368 * 0.50923 * 23 22 21 25 25 C 1.38290 * 120.15096 * 359.74333 * 24 23 22 26 26 C 1.38106 * 120.07156 * 0.02562 * 25 24 23 27 27 H 1.08993 * 109.47254 * 89.99974 * 1 2 3 28 28 H 1.09005 * 109.47468 * 210.00362 * 1 2 3 29 29 H 1.09007 * 109.46976 * 329.99739 * 1 2 3 30 30 H 1.09001 * 109.46905 * 330.00070 * 3 2 1 31 31 H 1.09004 * 109.46994 * 210.00325 * 3 2 1 32 32 H 1.09002 * 109.32426 * 342.24795 * 7 6 4 33 33 H 1.08998 * 109.18177 * 222.69384 * 7 6 4 34 34 H 1.08996 * 109.00769 * 297.68867 * 8 7 6 35 35 H 1.08999 * 108.93998 * 178.86027 * 8 7 6 36 36 H 1.09002 * 109.76365 * 162.04786 * 9 8 7 37 37 H 1.08997 * 109.80623 * 41.30209 * 9 8 7 38 38 H 0.96999 * 120.00336 * 356.29009 * 14 13 11 39 39 H 1.09000 * 109.48390 * 80.34282 * 19 10 9 40 40 H 1.09000 * 109.48517 * 200.37965 * 19 10 9 41 41 H 1.09000 * 108.87413 * 31.42667 * 20 6 4 42 42 H 1.09005 * 108.87599 * 149.96072 * 20 6 4 43 43 H 1.07993 * 120.03788 * 0.02562 * 22 21 2 44 44 H 1.07996 * 119.96100 * 180.25225 * 23 22 21 45 45 H 1.07999 * 119.92329 * 179.72421 * 24 23 22 46 46 H 1.07993 * 119.95875 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.03214 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 8 2.0542 1.0215 2.3426 6 7 3.1108 2.8516 1.6670 7 6 3.3571 3.2791 3.0647 8 6 4.7495 2.9977 3.4478 9 6 5.7522 3.7043 2.5200 10 7 5.8375 2.9487 1.3035 11 6 6.7159 1.9003 1.2347 12 1 6.9392 1.3240 2.1203 13 6 7.3193 1.5785 0.0267 14 7 7.8544 0.3884 -0.1450 15 14 7.3716 2.8345 -1.3550 16 1 8.0650 2.2488 -2.5304 17 1 8.1047 4.0424 -0.8984 18 1 5.9861 3.2104 -1.7350 19 6 5.0063 3.2712 0.1115 20 6 3.5762 3.6598 0.5749 21 6 2.1634 -1.2096 0.0005 22 6 3.5525 -1.2114 -0.0053 23 6 4.2398 -2.4092 0.0001 24 6 3.5468 -3.6059 0.0006 25 6 2.1639 -3.6077 0.0012 26 6 1.4703 -2.4135 0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 2.6836 2.7398 3.7308 33 1 3.1685 4.3492 3.1503 34 1 4.9200 1.9221 3.4014 35 1 4.9110 3.3387 4.4704 36 1 6.7310 3.7451 2.9979 37 1 5.4057 4.7146 2.3028 38 1 7.8752 -0.2447 0.5896 39 1 5.4551 4.1040 -0.4301 40 1 4.9527 2.3998 -0.5411 41 1 2.8899 3.5473 -0.2645 42 1 3.5827 4.7042 0.8868 43 1 4.0943 -0.2773 -0.0099 44 1 5.3198 -2.4114 -0.0004 45 1 4.0868 -4.5412 0.0003 46 1 1.6258 -4.5441 0.0012 47 1 0.3904 -2.4156 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989773931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:32 Heat of formation + Delta-G solvation = 51.386865 kcal Electronic energy + Delta-G solvation = -28596.209159 eV Core-core repulsion = 24973.810492 eV Total energy + Delta-G solvation = -3622.398667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13110 -38.94065 -37.22049 -35.64132 -34.35438 -32.97318 -31.44656 -30.74781 -29.72399 -28.59799 -27.58857 -25.93870 -24.81683 -23.18984 -22.44409 -21.76497 -20.56078 -19.87894 -18.65975 -17.52935 -17.44554 -16.79174 -16.17035 -15.38269 -15.27674 -15.02477 -14.81558 -14.43164 -14.08886 -13.82339 -13.65257 -13.43946 -13.24270 -13.10921 -12.87479 -12.74396 -12.44830 -12.26937 -12.15468 -11.88658 -11.75465 -11.57679 -11.40264 -11.03289 -10.78886 -10.45158 -10.39790 -10.30018 -10.18916 -9.96726 -9.64211 -9.20995 -9.09697 -8.48205 -8.46450 -8.12013 -7.02947 -7.00523 -6.24162 -3.38307 1.87532 1.99719 2.94856 3.11788 3.30480 3.47918 3.56739 3.65078 4.32791 4.56354 4.82153 4.86972 5.06400 5.08653 5.25859 5.32844 5.37110 5.38964 5.45260 5.47274 5.54079 5.59513 5.66816 5.75549 5.77025 5.79223 5.84194 5.88769 5.99527 6.04008 6.13474 6.26657 6.31060 6.44194 6.44592 6.52337 6.65854 6.70024 6.85593 6.88449 7.08563 7.10534 7.23825 7.43440 7.76422 7.83339 8.12206 8.47307 8.57781 9.04682 9.63460 10.15171 11.12819 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.006252 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.372887 B = 4477.321205 C = 5780.436720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.614 5.614 3 C 0.105 3.895 4 C 0.498 3.502 5 O -0.538 6.538 6 N -0.588 5.588 7 C 0.131 3.869 8 C -0.168 4.168 9 C 0.162 3.838 10 N -0.598 5.598 11 C -0.347 4.347 12 H 0.060 0.940 13 C -0.010 4.010 14 N -0.917 5.917 15 Si 1.046 2.954 16 H -0.299 1.299 17 H -0.293 1.293 18 H -0.273 1.273 19 C 0.110 3.890 20 C 0.088 3.912 21 C 0.219 3.781 22 C -0.177 4.177 23 C -0.064 4.064 24 C -0.182 4.182 25 C -0.083 4.083 26 C -0.200 4.200 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.034 0.966 38 H 0.263 0.737 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.808 3.314 -1.087 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.325 5.325 3 C -0.022 4.022 4 C 0.284 3.716 5 O -0.415 6.415 6 N -0.321 5.321 7 C 0.009 3.991 8 C -0.209 4.209 9 C 0.034 3.966 10 N -0.321 5.321 11 C -0.476 4.476 12 H 0.078 0.922 13 C -0.212 4.212 14 N -0.556 5.556 15 Si 0.877 3.123 16 H -0.226 1.226 17 H -0.221 1.221 18 H -0.200 1.200 19 C -0.016 4.016 20 C -0.038 4.038 21 C 0.118 3.882 22 C -0.199 4.199 23 C -0.082 4.082 24 C -0.202 4.202 25 C -0.101 4.101 26 C -0.223 4.223 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.657 3.338 -2.164 14.224 hybrid contribution -0.214 -0.086 1.767 1.782 sum -13.870 3.252 -0.397 14.252 Atomic orbital electron populations 1.21538 0.79598 1.02623 1.00331 1.45882 1.04464 1.02014 1.80161 1.21370 0.99725 0.86708 0.94392 1.21293 0.77711 0.80307 0.92253 1.90644 1.52059 1.52643 1.46148 1.47426 1.54930 1.22787 1.06926 1.20545 0.97682 0.98580 0.82277 1.21804 0.96079 1.03627 0.99341 1.20355 0.96497 0.92293 0.87452 1.43906 1.43361 1.35139 1.09698 1.20138 1.21076 1.07868 0.98537 0.92190 1.26222 0.95531 0.99805 0.99671 1.70902 1.47243 1.04328 1.33089 0.84374 0.76494 0.75318 0.76080 1.22591 1.22054 1.19970 1.23075 0.88743 0.99265 0.90519 1.21988 0.97401 0.95053 0.89364 1.17785 0.91236 0.85280 0.93858 1.20856 0.91871 0.99516 1.07689 1.21017 1.00120 0.91718 0.95391 1.20887 0.94142 0.97739 1.07436 1.20768 0.94215 0.96761 0.98377 1.20531 0.99064 0.91152 1.11525 0.93565 0.91424 0.92066 0.88438 0.87213 0.90528 0.92136 0.91263 0.92610 0.93055 0.94816 0.92694 0.94257 0.91306 0.91300 0.91245 0.85667 0.85774 0.86883 0.86786 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 10.19 59.84 0.61 1.84 16 2 N -0.61 -9.61 2.50 -181.00 -0.45 -10.07 16 3 C 0.11 1.62 4.20 -5.19 -0.02 1.60 16 4 C 0.50 9.01 7.74 -10.99 -0.09 8.93 16 5 O -0.54 -11.61 15.87 5.56 0.09 -11.52 16 6 N -0.59 -9.80 2.46 -176.40 -0.43 -10.23 16 7 C 0.13 2.09 5.70 -5.91 -0.03 2.06 16 8 C -0.17 -2.98 5.64 -29.13 -0.16 -3.15 16 9 C 0.16 3.07 5.63 -5.24 -0.03 3.04 16 10 N -0.60 -13.19 2.23 -171.75 -0.38 -13.57 16 11 C -0.35 -9.28 9.49 -15.06 -0.14 -9.42 16 12 H 0.06 1.80 8.06 -52.49 -0.42 1.38 16 13 C -0.01 -0.28 5.19 -17.43 -0.09 -0.37 16 14 N -0.92 -27.32 13.70 55.49 0.76 -26.56 16 15 Si 1.05 24.31 25.59 -169.99 -4.35 19.96 16 16 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -5.42 4.69 56.52 0.26 -5.16 16 19 C 0.11 2.09 4.21 -1.53 -0.01 2.09 16 20 C 0.09 1.31 5.06 -4.37 -0.02 1.28 16 21 C 0.22 3.85 6.55 -83.79 -0.55 3.30 16 22 C -0.18 -3.50 9.21 -39.38 -0.36 -3.86 16 23 C -0.06 -1.20 10.04 -39.61 -0.40 -1.60 16 24 C -0.18 -2.95 10.04 -39.54 -0.40 -3.35 16 25 C -0.08 -1.23 10.04 -39.61 -0.40 -1.63 16 26 C -0.20 -3.12 9.21 -39.38 -0.36 -3.49 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.79 6.20 -51.93 -0.32 0.47 16 29 H 0.06 0.69 8.07 -51.93 -0.42 0.28 16 30 H 0.10 1.15 7.29 -51.93 -0.38 0.77 16 31 H 0.11 1.84 5.40 -51.93 -0.28 1.56 16 32 H 0.08 1.30 7.12 -51.93 -0.37 0.93 16 33 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 1.02 8.02 -51.93 -0.42 0.61 16 37 H 0.03 0.56 7.59 -51.93 -0.39 0.16 16 38 H 0.26 7.92 8.73 -40.82 -0.36 7.56 16 39 H 0.04 0.73 5.69 -51.93 -0.30 0.44 16 40 H 0.07 1.43 5.24 -51.93 -0.27 1.16 16 41 H 0.07 0.82 6.38 -51.93 -0.33 0.49 16 42 H 0.07 0.89 7.72 -51.93 -0.40 0.49 16 43 H 0.13 2.75 6.14 -52.49 -0.32 2.43 16 44 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.12 1.52 6.14 -52.49 -0.32 1.20 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -32.75 359.59 -8.98 -41.74 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.18 Total: 7.55 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.45 Total: -2.72 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.51 Total: -60.43 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.35 Total: 19.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.75 -8.98 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989773931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.124 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds