Wall clock time and date at job start Tue Mar 31 2020 11:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46508 * 120.00202 * 2 1 4 4 C 1.50694 * 109.47040 * 90.00076 * 3 2 1 5 5 O 1.21281 * 120.00374 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99596 * 180.02562 * 4 3 2 7 7 C 1.48221 * 119.96707 * 179.97438 * 6 4 3 8 8 C 1.47139 * 110.33845 * 102.51357 * 7 6 4 9 9 C 1.53799 * 111.83975 * 58.29931 * 8 7 6 10 10 N 1.43459 * 107.95808 * 281.66255 * 9 8 7 11 11 C 1.36943 * 118.94161 * 273.61253 * 10 9 8 12 12 H 1.07997 * 119.99765 * 31.82364 * 11 10 9 13 13 C 1.38815 * 119.99926 * 211.82794 * 11 10 9 14 14 N 1.31618 * 119.99504 * 198.89328 * 13 11 10 15 15 Si 1.86800 * 119.99968 * 18.88862 * 13 11 10 16 16 H 1.48506 * 109.47001 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.46969 * 60.00492 * 15 13 11 18 18 H 1.48502 * 109.47300 * 299.99995 * 15 13 11 19 19 C 1.48857 * 122.12183 * 93.89203 * 10 9 8 20 20 C 1.43613 * 119.97026 * 0.02562 * 6 4 3 21 21 C 1.39678 * 120.00236 * 179.97438 * 2 1 3 22 22 C 1.38912 * 120.07706 * 179.72127 * 21 2 1 23 23 C 1.38104 * 119.92319 * 179.76916 * 22 21 2 24 24 C 1.38289 * 120.07368 * 0.50923 * 23 22 21 25 25 C 1.38290 * 120.15096 * 359.74333 * 24 23 22 26 26 C 1.38106 * 120.07156 * 0.02562 * 25 24 23 27 27 H 1.08993 * 109.47254 * 89.99974 * 1 2 3 28 28 H 1.09005 * 109.47468 * 210.00362 * 1 2 3 29 29 H 1.09007 * 109.46976 * 329.99739 * 1 2 3 30 30 H 1.09001 * 109.46905 * 330.00070 * 3 2 1 31 31 H 1.09004 * 109.46994 * 210.00325 * 3 2 1 32 32 H 1.09002 * 109.32426 * 342.24795 * 7 6 4 33 33 H 1.08998 * 109.18177 * 222.69384 * 7 6 4 34 34 H 1.08996 * 109.00769 * 297.68867 * 8 7 6 35 35 H 1.08999 * 108.93998 * 178.86027 * 8 7 6 36 36 H 1.09002 * 109.76365 * 162.04786 * 9 8 7 37 37 H 1.08997 * 109.80623 * 41.30209 * 9 8 7 38 38 H 0.96999 * 120.00336 * 356.29009 * 14 13 11 39 39 H 1.09000 * 109.48390 * 80.34282 * 19 10 9 40 40 H 1.09000 * 109.48517 * 200.37965 * 19 10 9 41 41 H 1.09000 * 108.87413 * 31.42667 * 20 6 4 42 42 H 1.09005 * 108.87599 * 149.96072 * 20 6 4 43 43 H 1.07993 * 120.03788 * 0.02562 * 22 21 2 44 44 H 1.07996 * 119.96100 * 180.25225 * 23 22 21 45 45 H 1.07999 * 119.92329 * 179.72421 * 24 23 22 46 46 H 1.07993 * 119.95875 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.03214 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 8 2.0542 1.0215 2.3426 6 7 3.1108 2.8516 1.6670 7 6 3.3571 3.2791 3.0647 8 6 4.7495 2.9977 3.4478 9 6 5.7522 3.7043 2.5200 10 7 5.8375 2.9487 1.3035 11 6 6.7159 1.9003 1.2347 12 1 6.9392 1.3240 2.1203 13 6 7.3193 1.5785 0.0267 14 7 7.8544 0.3884 -0.1450 15 14 7.3716 2.8345 -1.3550 16 1 8.0650 2.2488 -2.5304 17 1 8.1047 4.0424 -0.8984 18 1 5.9861 3.2104 -1.7350 19 6 5.0063 3.2712 0.1115 20 6 3.5762 3.6598 0.5749 21 6 2.1634 -1.2096 0.0005 22 6 3.5525 -1.2114 -0.0053 23 6 4.2398 -2.4092 0.0001 24 6 3.5468 -3.6059 0.0006 25 6 2.1639 -3.6077 0.0012 26 6 1.4703 -2.4135 0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 2.6836 2.7398 3.7308 33 1 3.1685 4.3492 3.1503 34 1 4.9200 1.9221 3.4014 35 1 4.9110 3.3387 4.4704 36 1 6.7310 3.7451 2.9979 37 1 5.4057 4.7146 2.3028 38 1 7.8752 -0.2447 0.5896 39 1 5.4551 4.1040 -0.4301 40 1 4.9527 2.3998 -0.5411 41 1 2.8899 3.5473 -0.2645 42 1 3.5827 4.7042 0.8868 43 1 4.0943 -0.2773 -0.0099 44 1 5.3198 -2.4114 -0.0004 45 1 4.0868 -4.5412 0.0003 46 1 1.6258 -4.5441 0.0012 47 1 0.3904 -2.4156 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989773931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:31 Heat of formation + Delta-G solvation = 30.476089 kcal Electronic energy + Delta-G solvation = -28597.115918 eV Core-core repulsion = 24973.810492 eV Total energy + Delta-G solvation = -3623.305427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48210 -40.26250 -38.76041 -36.91000 -36.00303 -34.47845 -33.39315 -32.05929 -31.01150 -29.82501 -29.09475 -27.45345 -26.04970 -24.92558 -23.88075 -23.11304 -21.91439 -21.53312 -20.03919 -19.37406 -18.72218 -18.23810 -17.58366 -16.85965 -16.55344 -16.54162 -16.17870 -15.88090 -15.59817 -15.27661 -15.06863 -14.84398 -14.61731 -14.46467 -14.39073 -14.18014 -13.97367 -13.67032 -13.46434 -13.43183 -12.94970 -12.87653 -12.78977 -12.42927 -12.31280 -11.98238 -11.93666 -11.80966 -11.72863 -11.43744 -11.26108 -11.10408 -10.57725 -10.41831 -9.84650 -9.55190 -8.99529 -8.41406 -8.25302 -5.54676 0.51505 0.67038 1.43383 1.57692 1.59043 1.77143 1.92480 2.34782 2.61737 2.98072 3.14202 3.45400 3.60812 3.87474 3.95188 4.04796 4.05140 4.11263 4.17331 4.23886 4.32178 4.36875 4.39643 4.46879 4.57924 4.60396 4.63529 4.68631 4.74991 4.79171 4.84527 4.88735 4.91050 4.95551 5.00027 5.13367 5.17533 5.32520 5.38572 5.58882 5.69565 5.74707 5.84315 5.93890 6.21137 6.30927 6.51056 6.52854 6.98573 7.21730 7.71484 8.07552 8.88071 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.006252 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.372887 B = 4477.321205 C = 5780.436720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.618 5.618 3 C 0.107 3.893 4 C 0.490 3.510 5 O -0.583 6.583 6 N -0.589 5.589 7 C 0.130 3.870 8 C -0.154 4.154 9 C 0.158 3.842 10 N -0.610 5.610 11 C -0.329 4.329 12 H 0.002 0.998 13 C -0.067 4.067 14 N -0.954 5.954 15 Si 1.084 2.916 16 H -0.319 1.319 17 H -0.282 1.282 18 H -0.210 1.210 19 C 0.098 3.902 20 C 0.090 3.910 21 C 0.211 3.789 22 C -0.209 4.209 23 C -0.091 4.091 24 C -0.186 4.186 25 C -0.072 4.072 26 C -0.199 4.199 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.006 0.994 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.239 0.761 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.134 0.866 46 H 0.157 0.843 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.927 6.100 -2.499 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.328 5.328 3 C -0.020 4.020 4 C 0.278 3.722 5 O -0.463 6.463 6 N -0.320 5.320 7 C 0.008 3.992 8 C -0.195 4.195 9 C 0.032 3.968 10 N -0.333 5.333 11 C -0.459 4.459 12 H 0.020 0.980 13 C -0.261 4.261 14 N -0.596 5.596 15 Si 0.908 3.092 16 H -0.248 1.248 17 H -0.208 1.208 18 H -0.133 1.133 19 C -0.027 4.027 20 C -0.035 4.035 21 C 0.109 3.891 22 C -0.231 4.231 23 C -0.110 4.110 24 C -0.206 4.206 25 C -0.091 4.091 26 C -0.221 4.221 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.162 0.838 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.025 0.975 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.152 0.848 46 H 0.174 0.826 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.832 6.188 -3.551 19.206 hybrid contribution 1.074 -1.009 2.369 2.790 sum -16.758 5.179 -1.182 17.579 Atomic orbital electron populations 1.21788 0.77093 1.03278 1.02271 1.46132 1.05938 1.01302 1.79441 1.21454 0.99890 0.87921 0.92749 1.21895 0.77210 0.80149 0.92965 1.90613 1.54096 1.53931 1.47660 1.47596 1.54031 1.22637 1.07784 1.20619 0.95448 1.01105 0.81996 1.21658 0.97543 0.99393 1.00902 1.20499 0.96049 0.94145 0.86141 1.43968 1.43405 1.34231 1.11743 1.19816 1.21564 1.08090 0.96438 0.98038 1.27629 0.95125 1.00431 1.02893 1.71050 1.50504 1.05678 1.32360 0.84019 0.79763 0.72983 0.72407 1.24755 1.20829 1.13337 1.23241 0.91327 0.98960 0.89149 1.22104 0.94860 0.96376 0.90167 1.17945 0.90345 0.87233 0.93580 1.20639 0.93424 0.98077 1.10996 1.20976 0.99117 0.93277 0.97585 1.21123 0.95310 0.97170 1.07027 1.21249 0.93487 0.98417 0.95897 1.20960 1.00706 0.90347 1.10044 0.90737 0.91102 0.91194 0.83756 0.89213 0.91918 0.87328 0.97534 0.90144 0.95063 0.90123 0.95199 0.92011 0.93737 0.87408 0.87307 0.89521 0.88575 0.84767 0.82585 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.01 10.19 127.77 1.30 3.31 16 2 N -0.62 -18.46 2.50 -726.55 -1.81 -20.28 16 3 C 0.11 3.14 4.20 85.63 0.36 3.50 16 4 C 0.49 17.37 7.74 87.65 0.68 18.05 16 5 O -0.58 -25.52 15.87 -3.03 -0.05 -25.57 16 6 N -0.59 -18.25 2.46 -830.38 -2.04 -20.29 16 7 C 0.13 3.86 5.70 84.23 0.48 4.34 16 8 C -0.15 -5.49 5.64 29.04 0.16 -5.32 16 9 C 0.16 5.84 5.63 87.21 0.49 6.33 16 10 N -0.61 -26.95 2.23 -697.28 -1.55 -28.50 16 11 C -0.33 -18.80 9.49 84.03 0.80 -18.00 16 12 H 0.00 0.12 8.06 -2.91 -0.02 0.09 16 13 C -0.07 -3.88 5.19 84.86 0.44 -3.44 16 14 N -0.95 -61.74 13.70 21.65 0.30 -61.45 16 15 Si 1.08 49.18 25.59 68.60 1.76 50.94 16 16 H -0.32 -15.53 7.11 99.48 0.71 -14.82 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.21 -7.46 4.69 99.48 0.47 -6.99 16 19 C 0.10 3.46 4.21 86.70 0.36 3.83 16 20 C 0.09 2.23 5.06 87.69 0.44 2.68 16 21 C 0.21 7.44 6.55 38.21 0.25 7.69 16 22 C -0.21 -8.94 9.21 22.40 0.21 -8.73 16 23 C -0.09 -3.75 10.04 22.25 0.22 -3.53 16 24 C -0.19 -6.14 10.04 22.29 0.22 -5.92 16 25 C -0.07 -2.00 10.04 22.25 0.22 -1.78 16 26 C -0.20 -5.79 9.21 22.40 0.21 -5.58 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.41 6.20 -2.38 -0.01 1.40 16 29 H 0.07 1.33 8.07 -2.38 -0.02 1.32 16 30 H 0.14 2.76 7.29 -2.39 -0.02 2.74 16 31 H 0.09 3.05 5.40 -2.39 -0.01 3.04 16 32 H 0.06 2.07 7.12 -2.39 -0.02 2.05 16 33 H 0.11 2.27 8.05 -2.39 -0.02 2.25 16 34 H 0.01 0.28 7.91 -2.39 -0.02 0.26 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.03 1.26 8.02 -2.39 -0.02 1.24 16 37 H 0.08 2.28 7.59 -2.39 -0.02 2.26 16 38 H 0.24 16.09 8.73 -92.71 -0.81 15.28 16 39 H 0.06 1.96 5.69 -2.39 -0.01 1.95 16 40 H 0.04 1.79 5.24 -2.39 -0.01 1.78 16 41 H 0.11 1.92 6.38 -2.39 -0.02 1.90 16 42 H 0.11 1.97 7.72 -2.38 -0.02 1.96 16 43 H 0.09 4.27 6.14 -2.91 -0.02 4.26 16 44 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 45 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 46 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.15 3.32 6.14 -2.91 -0.02 3.30 16 Total: -1.00 -83.58 359.59 4.13 -79.45 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.69 Total: 28.29 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 6.86 Total: -2.59 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -5.11 Total: -130.52 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.76 Total: 50.94 kcal Total: -83.58 4.13 -79.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989773931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.922 kcal (2) G-P(sol) polarization free energy of solvation -83.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds