Wall clock time and date at job start Tue Mar 31 2020 11:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00169 * 2 1 4 4 C 1.38876 * 111.00094 * 123.95426 * 2 1 3 5 5 C 1.38961 * 120.17315 * 300.00153 * 4 2 1 6 6 C 1.37949 * 120.06753 * 179.97438 * 5 4 2 7 7 C 1.38611 * 120.42053 * 359.97438 * 6 5 4 8 8 C 1.37750 * 120.35110 * 359.97438 * 7 6 5 9 9 C 1.39735 * 119.93009 * 0.29785 * 8 7 6 10 10 C 1.47425 * 120.20964 * 179.69601 * 9 8 7 11 11 O 1.21599 * 120.00242 * 205.40031 * 10 9 8 12 12 N 1.34775 * 120.00225 * 25.40966 * 10 9 8 13 13 C 1.48211 * 119.97300 * 172.83648 * 12 10 9 14 14 C 1.47715 * 110.06974 * 102.59193 * 13 12 10 15 15 C 1.53796 * 111.83844 * 58.36696 * 14 13 12 16 16 N 1.43471 * 107.96017 * 281.60386 * 15 14 13 17 17 C 1.36942 * 118.93574 * 273.63248 * 16 15 14 18 18 H 1.08000 * 119.99518 * 139.55499 * 17 16 15 19 19 C 1.38810 * 119.99778 * 319.55098 * 17 16 15 20 20 N 1.31626 * 119.99721 * 161.32640 * 19 17 16 21 21 Si 1.86797 * 120.00400 * 341.32830 * 19 17 16 22 22 H 1.48501 * 109.47119 * 95.83616 * 21 19 17 23 23 H 1.48499 * 109.47075 * 215.83897 * 21 19 17 24 24 H 1.48502 * 109.47110 * 335.83844 * 21 19 17 25 25 C 1.48856 * 122.12038 * 93.64633 * 16 15 14 26 26 C 1.43623 * 119.96693 * 353.10821 * 12 10 9 27 27 H 1.08997 * 109.47163 * 296.04439 * 1 2 3 28 28 H 1.09005 * 109.46933 * 56.04908 * 1 2 3 29 29 H 1.08997 * 109.46860 * 176.04315 * 1 2 3 30 30 H 1.08990 * 109.47428 * 183.95273 * 3 2 1 31 31 H 1.09007 * 109.46983 * 303.95219 * 3 2 1 32 32 H 1.08999 * 109.47041 * 63.94604 * 3 2 1 33 33 H 1.08004 * 119.96477 * 0.02562 * 5 4 2 34 34 H 1.07994 * 119.79453 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.83117 * 180.02562 * 7 6 5 36 36 H 1.08010 * 120.03676 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.32465 * 222.77766 * 13 12 10 38 38 H 1.08997 * 109.32615 * 342.24422 * 13 12 10 39 39 H 1.09001 * 109.06385 * 297.72746 * 14 13 12 40 40 H 1.08998 * 108.89730 * 178.89667 * 14 13 12 41 41 H 1.08997 * 109.76835 * 161.98572 * 15 14 13 42 42 H 1.09000 * 109.80568 * 41.23888 * 15 14 13 43 43 H 0.96993 * 119.99626 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.47771 * 200.61626 * 25 16 15 45 45 H 1.08999 * 109.48599 * 80.59803 * 25 16 15 46 46 H 1.09001 * 108.87317 * 31.42621 * 26 12 10 47 47 H 1.08995 * 108.87743 * 149.96403 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7241 1.0754 5 6 1.6562 -0.3456 2.3759 6 6 2.1514 -1.0668 3.4426 7 6 2.9598 -2.1720 3.2277 8 6 3.2777 -2.5632 1.9457 9 6 2.7888 -1.8400 0.8547 10 6 3.1306 -2.2492 -0.5198 11 8 3.1236 -1.4294 -1.4178 12 7 3.4507 -3.5320 -0.7811 13 6 3.6388 -3.9777 -2.1820 14 6 5.0792 -4.0975 -2.4868 15 6 5.7837 -5.0854 -1.5417 16 7 6.0110 -4.4170 -0.2927 17 6 7.1463 -3.6667 -0.1397 18 1 7.1019 -2.7194 0.3771 19 6 8.3540 -4.1236 -0.6490 20 7 9.3487 -3.2827 -0.8383 21 14 8.5678 -5.9320 -1.0655 22 1 8.3049 -6.1412 -2.5120 23 1 9.9564 -6.3521 -0.7489 24 1 7.6117 -6.7403 -0.2668 25 6 5.0527 -4.5132 0.8424 26 6 3.6035 -4.4674 0.2980 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0827 1.3432 -0.0708 31 1 1.5899 1.9163 -0.8525 32 1 1.7043 1.8724 0.9232 33 1 1.0260 0.5136 2.5518 34 1 1.9076 -0.7684 4.4515 35 1 3.3419 -2.7300 4.0698 36 1 3.9077 -3.4255 1.7841 37 1 3.1578 -4.9460 -2.3202 38 1 3.1830 -3.2521 -2.8557 39 1 5.5466 -3.1177 -2.3887 40 1 5.1951 -4.4446 -3.5135 41 1 6.7359 -5.3934 -1.9735 42 1 5.1515 -5.9589 -1.3825 43 1 10.1925 -3.6019 -1.1945 44 1 5.2116 -3.6776 1.5240 45 1 5.2119 -5.4513 1.3741 46 1 2.9314 -4.1841 1.1081 47 1 3.3296 -5.4614 -0.0554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989784030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:56 Heat of formation + Delta-G solvation = 96.650515 kcal Electronic energy + Delta-G solvation = -28559.824801 eV Core-core repulsion = 24939.388912 eV Total energy + Delta-G solvation = -3620.435888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.72044 -38.94021 -37.02168 -36.51134 -34.36256 -33.15575 -31.53229 -30.54225 -29.89913 -28.00577 -27.58150 -25.87003 -24.63515 -23.86380 -23.20049 -22.23166 -20.67183 -20.12682 -18.88975 -17.08522 -17.01986 -16.52626 -16.03029 -15.56527 -15.26460 -15.04715 -15.00879 -14.78944 -14.21068 -14.03185 -13.58088 -13.26901 -13.11280 -12.86583 -12.70967 -12.55392 -12.39084 -12.27788 -12.06793 -12.03572 -11.70348 -11.64971 -11.49995 -11.34613 -10.92824 -10.79997 -10.56944 -10.22105 -10.07610 -9.74417 -9.56280 -9.27172 -8.78930 -8.65834 -8.50839 -8.29491 -8.04153 -6.75224 -5.95797 -3.42833 1.04588 1.30964 3.24418 3.31031 3.45247 3.48858 3.50318 3.87275 3.95545 4.51864 4.76936 4.85011 4.92077 5.06072 5.09408 5.22113 5.26120 5.33484 5.38221 5.42892 5.50602 5.50991 5.55289 5.61355 5.70148 5.77488 5.81817 5.86462 5.91995 5.96777 6.00332 6.12646 6.30029 6.31965 6.36056 6.39936 6.45790 6.48785 6.57496 6.75320 6.78763 6.93871 7.05260 7.26552 7.44223 7.97520 8.13165 8.40517 8.79880 9.03919 9.72533 10.09488 11.19449 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.004560 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.474000 B = 6138.991406 C = 6519.365570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.495 5.495 3 C 0.039 3.961 4 C 0.139 3.861 5 C -0.166 4.166 6 C -0.094 4.094 7 C -0.132 4.132 8 C -0.129 4.129 9 C -0.103 4.103 10 C 0.563 3.437 11 O -0.511 6.511 12 N -0.587 5.587 13 C 0.134 3.866 14 C -0.165 4.165 15 C 0.153 3.847 16 N -0.598 5.598 17 C -0.268 4.268 18 H 0.074 0.926 19 C 0.036 3.964 20 N -0.902 5.902 21 Si 0.887 3.113 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.109 3.891 26 C 0.066 3.934 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.185 0.815 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.263 0.737 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.093 0.907 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.440 1.146 6.032 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.215 5.215 3 C -0.108 4.108 4 C 0.043 3.957 5 C -0.186 4.186 6 C -0.113 4.113 7 C -0.151 4.151 8 C -0.146 4.146 9 C -0.107 4.107 10 C 0.351 3.649 11 O -0.386 6.386 12 N -0.320 5.320 13 C 0.013 3.987 14 C -0.206 4.206 15 C 0.027 3.973 16 N -0.322 5.322 17 C -0.397 4.397 18 H 0.092 0.908 19 C -0.164 4.164 20 N -0.543 5.543 21 Si 0.718 3.282 22 H -0.215 1.215 23 H -0.232 1.232 24 H -0.196 1.196 25 C -0.017 4.017 26 C -0.060 4.060 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.201 0.799 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.110 0.890 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.141 1.399 5.014 18.873 hybrid contribution 0.125 -0.559 0.548 0.793 sum -18.016 0.840 5.562 18.874 Atomic orbital electron populations 1.22430 0.86376 1.02346 1.00405 1.59171 1.07415 1.14266 1.40689 1.22350 1.01722 0.86748 0.99938 1.18680 0.95142 0.93101 0.88735 1.21557 1.02858 1.01164 0.93022 1.21144 0.96594 0.95034 0.98493 1.21186 0.99173 0.97551 0.97141 1.23364 0.98620 1.00770 0.91885 1.20012 1.00239 0.96421 0.94036 1.17904 0.77246 0.81898 0.87841 1.90754 1.51331 1.50212 1.46308 1.47208 1.68740 1.09042 1.06968 1.20673 0.97287 0.98956 0.81809 1.21827 0.95715 1.03975 0.99086 1.20656 0.97286 0.92687 0.86697 1.43756 1.22275 1.58319 1.07806 1.18760 0.84108 0.99667 1.37194 0.90835 1.25508 0.95324 0.97148 0.98441 1.69845 1.04557 1.33868 1.46040 0.86770 0.76052 0.87788 0.77558 1.21478 1.23169 1.19586 1.22482 0.88154 0.99733 0.91297 1.22505 0.98613 0.93536 0.91336 0.95581 0.90949 0.91543 0.90788 0.91019 0.95792 0.86195 0.86091 0.85431 0.79911 0.92276 0.90219 0.90100 0.92632 0.93391 0.94542 0.92748 0.90777 0.94320 0.88955 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.34 60.07 0.56 0.92 16 2 N -0.50 -7.31 3.24 -186.63 -0.61 -7.91 16 3 C 0.04 0.51 9.38 60.07 0.56 1.07 16 4 C 0.14 2.09 4.70 -83.61 -0.39 1.69 16 5 C -0.17 -2.04 8.55 -39.42 -0.34 -2.37 16 6 C -0.09 -1.04 10.03 -39.55 -0.40 -1.44 16 7 C -0.13 -1.58 10.02 -39.62 -0.40 -1.98 16 8 C -0.13 -1.86 7.19 -39.20 -0.28 -2.14 16 9 C -0.10 -1.72 5.65 -104.81 -0.59 -2.31 16 10 C 0.56 10.84 7.41 -12.52 -0.09 10.75 16 11 O -0.51 -11.32 14.98 5.28 0.08 -11.24 16 12 N -0.59 -10.34 2.45 -177.62 -0.43 -10.77 16 13 C 0.13 2.29 5.70 -5.66 -0.03 2.26 16 14 C -0.17 -3.26 5.66 -28.87 -0.16 -3.43 16 15 C 0.15 3.26 4.52 -5.23 -0.02 3.23 16 16 N -0.60 -13.68 2.09 -171.99 -0.36 -14.04 16 17 C -0.27 -7.43 9.57 -15.06 -0.14 -7.57 16 18 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 19 C 0.04 1.04 5.34 -17.43 -0.09 0.95 16 20 N -0.90 -27.71 13.97 55.49 0.78 -26.94 16 21 Si 0.89 22.15 24.89 -169.99 -4.23 17.92 16 22 H -0.29 -7.01 6.77 56.52 0.38 -6.62 16 23 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.11 1.97 6.08 -1.75 -0.01 1.96 16 26 C 0.07 0.99 4.71 -4.58 -0.02 0.97 16 27 H 0.03 0.25 7.11 -51.93 -0.37 -0.12 16 28 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.02 0.26 7.33 -51.93 -0.38 -0.12 16 33 H 0.12 1.24 7.01 -52.48 -0.37 0.88 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.18 2.64 1.56 -52.48 -0.08 2.56 16 37 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.08 1.40 7.21 -51.93 -0.37 1.03 16 39 H 0.08 1.95 7.91 -51.93 -0.41 1.54 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.13 3.09 -51.93 -0.16 0.97 16 42 H 0.04 0.68 7.59 -51.93 -0.39 0.28 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.07 1.37 5.70 -51.93 -0.30 1.07 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.21 4.51 -51.93 -0.23 0.97 16 47 H 0.07 0.92 7.72 -51.93 -0.40 0.52 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -33.95 352.52 -8.16 -42.12 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.85 Total: 3.00 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.85 Total: 2.56 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.63 Total: -59.67 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.23 Total: 17.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.95 -8.16 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989784030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.766 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds