Wall clock time and date at job start Tue Mar 31 2020 11:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00169 * 2 1 4 4 C 1.38876 * 111.00094 * 123.95426 * 2 1 3 5 5 C 1.38961 * 120.17315 * 300.00153 * 4 2 1 6 6 C 1.37949 * 120.06753 * 179.97438 * 5 4 2 7 7 C 1.38611 * 120.42053 * 359.97438 * 6 5 4 8 8 C 1.37750 * 120.35110 * 359.97438 * 7 6 5 9 9 C 1.39735 * 119.93009 * 0.29785 * 8 7 6 10 10 C 1.47425 * 120.20964 * 179.69601 * 9 8 7 11 11 O 1.21599 * 120.00242 * 205.40031 * 10 9 8 12 12 N 1.34775 * 120.00225 * 25.40966 * 10 9 8 13 13 C 1.48211 * 119.97300 * 172.83648 * 12 10 9 14 14 C 1.47715 * 110.06974 * 102.59193 * 13 12 10 15 15 C 1.53796 * 111.83844 * 58.36696 * 14 13 12 16 16 N 1.43471 * 107.96017 * 281.60386 * 15 14 13 17 17 C 1.36942 * 118.93574 * 273.63248 * 16 15 14 18 18 H 1.08000 * 119.99518 * 139.55499 * 17 16 15 19 19 C 1.38810 * 119.99778 * 319.55098 * 17 16 15 20 20 N 1.31626 * 119.99721 * 161.32640 * 19 17 16 21 21 Si 1.86797 * 120.00400 * 341.32830 * 19 17 16 22 22 H 1.48501 * 109.47119 * 95.83616 * 21 19 17 23 23 H 1.48499 * 109.47075 * 215.83897 * 21 19 17 24 24 H 1.48502 * 109.47110 * 335.83844 * 21 19 17 25 25 C 1.48856 * 122.12038 * 93.64633 * 16 15 14 26 26 C 1.43623 * 119.96693 * 353.10821 * 12 10 9 27 27 H 1.08997 * 109.47163 * 296.04439 * 1 2 3 28 28 H 1.09005 * 109.46933 * 56.04908 * 1 2 3 29 29 H 1.08997 * 109.46860 * 176.04315 * 1 2 3 30 30 H 1.08990 * 109.47428 * 183.95273 * 3 2 1 31 31 H 1.09007 * 109.46983 * 303.95219 * 3 2 1 32 32 H 1.08999 * 109.47041 * 63.94604 * 3 2 1 33 33 H 1.08004 * 119.96477 * 0.02562 * 5 4 2 34 34 H 1.07994 * 119.79453 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.83117 * 180.02562 * 7 6 5 36 36 H 1.08010 * 120.03676 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.32465 * 222.77766 * 13 12 10 38 38 H 1.08997 * 109.32615 * 342.24422 * 13 12 10 39 39 H 1.09001 * 109.06385 * 297.72746 * 14 13 12 40 40 H 1.08998 * 108.89730 * 178.89667 * 14 13 12 41 41 H 1.08997 * 109.76835 * 161.98572 * 15 14 13 42 42 H 1.09000 * 109.80568 * 41.23888 * 15 14 13 43 43 H 0.96993 * 119.99626 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.47771 * 200.61626 * 25 16 15 45 45 H 1.08999 * 109.48599 * 80.59803 * 25 16 15 46 46 H 1.09001 * 108.87317 * 31.42621 * 26 12 10 47 47 H 1.08995 * 108.87743 * 149.96403 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7241 1.0754 5 6 1.6562 -0.3456 2.3759 6 6 2.1514 -1.0668 3.4426 7 6 2.9598 -2.1720 3.2277 8 6 3.2777 -2.5632 1.9457 9 6 2.7888 -1.8400 0.8547 10 6 3.1306 -2.2492 -0.5198 11 8 3.1236 -1.4294 -1.4178 12 7 3.4507 -3.5320 -0.7811 13 6 3.6388 -3.9777 -2.1820 14 6 5.0792 -4.0975 -2.4868 15 6 5.7837 -5.0854 -1.5417 16 7 6.0110 -4.4170 -0.2927 17 6 7.1463 -3.6667 -0.1397 18 1 7.1019 -2.7194 0.3771 19 6 8.3540 -4.1236 -0.6490 20 7 9.3487 -3.2827 -0.8383 21 14 8.5678 -5.9320 -1.0655 22 1 8.3049 -6.1412 -2.5120 23 1 9.9564 -6.3521 -0.7489 24 1 7.6117 -6.7403 -0.2668 25 6 5.0527 -4.5132 0.8424 26 6 3.6035 -4.4674 0.2980 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0827 1.3432 -0.0708 31 1 1.5899 1.9163 -0.8525 32 1 1.7043 1.8724 0.9232 33 1 1.0260 0.5136 2.5518 34 1 1.9076 -0.7684 4.4515 35 1 3.3419 -2.7300 4.0698 36 1 3.9077 -3.4255 1.7841 37 1 3.1578 -4.9460 -2.3202 38 1 3.1830 -3.2521 -2.8557 39 1 5.5466 -3.1177 -2.3887 40 1 5.1951 -4.4446 -3.5135 41 1 6.7359 -5.3934 -1.9735 42 1 5.1515 -5.9589 -1.3825 43 1 10.1925 -3.6019 -1.1945 44 1 5.2116 -3.6776 1.5240 45 1 5.2119 -5.4513 1.3741 46 1 2.9314 -4.1841 1.1081 47 1 3.3296 -5.4614 -0.0554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989784030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:55 Heat of formation + Delta-G solvation = 74.482383 kcal Electronic energy + Delta-G solvation = -28560.786083 eV Core-core repulsion = 24939.388912 eV Total energy + Delta-G solvation = -3621.397170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93961 -40.15743 -38.55617 -37.62563 -35.97831 -34.56202 -33.58413 -31.69477 -30.96487 -29.55642 -28.53946 -27.45104 -25.71207 -25.56850 -24.51962 -23.45298 -21.86610 -21.77192 -20.15243 -18.73782 -18.33362 -18.00012 -17.40940 -17.18490 -16.58042 -16.25219 -16.17440 -15.93497 -15.59695 -15.38378 -14.96463 -14.83290 -14.59754 -14.39919 -14.11460 -13.89366 -13.63208 -13.44917 -13.28691 -13.22387 -13.05492 -12.94732 -12.70678 -12.67221 -12.44792 -12.39257 -12.11415 -11.88037 -11.60637 -11.48739 -11.41073 -10.66339 -10.63353 -9.84140 -9.70268 -9.46149 -9.27534 -8.64894 -8.16640 -5.60367 -0.02908 0.31845 1.33020 1.42256 1.54702 1.99941 2.19681 2.43531 2.80172 2.91002 3.09539 3.34034 3.68405 3.94250 4.06431 4.08511 4.14218 4.17312 4.17967 4.32218 4.32625 4.37853 4.44421 4.49230 4.55720 4.60556 4.63385 4.67730 4.72181 4.78598 4.89646 4.91350 4.92084 4.97376 4.98120 5.05474 5.15072 5.34069 5.39254 5.47411 5.50114 5.78148 5.83392 5.99186 5.99479 6.17120 6.42631 6.63677 7.06647 7.39937 7.67981 8.02945 9.03321 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.004560 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.474000 B = 6138.991406 C = 6519.365570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.526 5.526 3 C 0.044 3.956 4 C 0.126 3.874 5 C -0.165 4.165 6 C -0.082 4.082 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.140 4.140 10 C 0.552 3.448 11 O -0.558 6.558 12 N -0.591 5.591 13 C 0.134 3.866 14 C -0.154 4.154 15 C 0.147 3.853 16 N -0.609 5.609 17 C -0.253 4.253 18 H 0.021 0.979 19 C -0.027 4.027 20 N -0.959 5.959 21 Si 0.962 3.038 22 H -0.279 1.279 23 H -0.313 1.313 24 H -0.246 1.246 25 C 0.104 3.896 26 C 0.069 3.931 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.020 0.980 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.261 0.739 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.119 0.881 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.388 -1.220 8.020 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.247 5.247 3 C -0.103 4.103 4 C 0.030 3.970 5 C -0.185 4.185 6 C -0.100 4.100 7 C -0.149 4.149 8 C -0.155 4.155 9 C -0.144 4.144 10 C 0.342 3.658 11 O -0.437 6.437 12 N -0.322 5.322 13 C 0.013 3.987 14 C -0.195 4.195 15 C 0.021 3.979 16 N -0.333 5.333 17 C -0.383 4.383 18 H 0.038 0.962 19 C -0.222 4.222 20 N -0.603 5.603 21 Si 0.791 3.209 22 H -0.206 1.206 23 H -0.242 1.242 24 H -0.169 1.169 25 C -0.020 4.020 26 C -0.055 4.055 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.197 0.803 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.147 -1.008 7.029 22.307 hybrid contribution 0.973 0.332 -0.012 1.028 sum -20.174 -0.677 7.017 21.370 Atomic orbital electron populations 1.22437 0.84503 1.02357 1.01834 1.59073 1.09247 1.14741 1.41645 1.22277 0.99599 0.86803 1.01582 1.18897 0.95223 0.92820 0.90013 1.21812 1.02830 1.01814 0.92043 1.21601 0.94746 0.93776 0.99915 1.21551 0.98616 0.97888 0.96812 1.23337 0.98808 1.00886 0.92516 1.20054 1.02729 0.98536 0.93081 1.18523 0.76478 0.82046 0.88745 1.90709 1.53541 1.51503 1.47941 1.47375 1.67953 1.09106 1.07751 1.20706 0.95468 1.00793 0.81774 1.21702 0.96992 1.00423 1.00379 1.20792 0.97091 0.94117 0.85905 1.43858 1.21613 1.57857 1.09991 1.18530 0.86191 0.98291 1.35307 0.96169 1.26225 0.94948 1.01835 0.99225 1.70018 1.05395 1.36195 1.48724 0.85561 0.75704 0.81680 0.77965 1.20596 1.24223 1.16934 1.22725 0.88735 1.00652 0.89890 1.22596 0.96834 0.94530 0.91584 0.93470 0.90156 0.92150 0.94184 0.90014 0.93474 0.83954 0.82339 0.82477 0.80254 0.87776 0.91472 0.96103 0.90566 0.95608 0.90161 0.93019 0.91938 0.91529 0.86418 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.34 127.69 1.19 1.94 16 2 N -0.53 -15.57 3.24 -744.38 -2.41 -17.98 16 3 C 0.04 1.16 9.38 127.69 1.20 2.36 16 4 C 0.13 3.71 4.70 38.71 0.18 3.89 16 5 C -0.16 -3.63 8.55 22.37 0.19 -3.43 16 6 C -0.08 -1.51 10.03 22.29 0.22 -1.29 16 7 C -0.13 -2.72 10.02 22.24 0.22 -2.50 16 8 C -0.14 -3.79 7.19 22.52 0.16 -3.63 16 9 C -0.14 -4.67 5.65 -19.98 -0.11 -4.79 16 10 C 0.55 21.87 7.41 86.66 0.64 22.52 16 11 O -0.56 -26.25 14.98 -4.03 -0.06 -26.31 16 12 N -0.59 -20.37 2.45 -834.13 -2.04 -22.42 16 13 C 0.13 4.42 5.70 84.40 0.48 4.90 16 14 C -0.15 -6.07 5.66 29.21 0.17 -5.91 16 15 C 0.15 5.95 4.52 87.21 0.39 6.34 16 16 N -0.61 -27.57 2.09 -698.06 -1.46 -29.03 16 17 C -0.25 -14.57 9.57 84.03 0.80 -13.76 16 18 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 19 C -0.03 -1.59 5.34 84.86 0.45 -1.14 16 20 N -0.96 -61.97 13.97 21.65 0.30 -61.67 16 21 Si 0.96 46.26 24.89 68.60 1.71 47.96 16 22 H -0.28 -12.89 6.77 99.48 0.67 -12.21 16 23 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 24 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 25 C 0.10 3.58 6.08 86.56 0.53 4.10 16 26 C 0.07 1.89 4.71 87.55 0.41 2.30 16 27 H 0.05 0.80 7.11 -2.39 -0.02 0.78 16 28 H 0.08 1.55 8.12 -2.38 -0.02 1.53 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.92 8.12 -2.38 -0.02 1.91 16 32 H 0.05 0.99 7.33 -2.39 -0.02 0.97 16 33 H 0.14 2.43 7.01 -2.91 -0.02 2.41 16 34 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.18 4.91 1.56 -2.91 0.00 4.91 16 37 H 0.10 2.54 8.05 -2.38 -0.02 2.52 16 38 H 0.07 2.39 7.21 -2.39 -0.02 2.38 16 39 H 0.02 1.04 7.91 -2.39 -0.02 1.02 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.03 1.18 3.09 -2.39 -0.01 1.17 16 42 H 0.08 2.58 7.59 -2.39 -0.02 2.57 16 43 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 44 H 0.06 2.29 5.70 -2.39 -0.01 2.28 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.12 2.73 4.51 -2.39 -0.01 2.72 16 47 H 0.10 2.16 7.72 -2.39 -0.02 2.14 16 Total: -1.00 -81.51 352.52 4.11 -77.39 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.95 Total: 20.13 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 7.14 Total: 11.93 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -5.62 Total: -131.10 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.06 Total: -26.31 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.71 Total: 47.96 kcal Total: -81.51 4.11 -77.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989784030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.876 kcal (2) G-P(sol) polarization free energy of solvation -81.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds