Wall clock time and date at job start Tue Mar 31 2020 11:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35536 * 125.67607 * 2 1 4 4 C 1.35450 * 108.86688 * 179.97438 * 3 2 1 5 5 C 1.39832 * 107.86750 * 359.73664 * 4 3 2 6 6 C 1.37654 * 125.67706 * 179.97438 * 2 1 3 7 7 C 1.46672 * 126.23313 * 0.02562 * 6 2 1 8 8 O 1.21698 * 120.00180 * 6.09564 * 7 6 2 9 9 N 1.34777 * 120.00154 * 186.09778 * 7 6 2 10 10 C 1.47380 * 125.74110 * 354.88712 * 9 7 6 11 11 C 1.55434 * 106.73957 * 181.02737 * 10 9 7 12 12 H 1.09004 * 112.50667 * 213.26907 * 11 10 9 13 13 C 1.52995 * 106.45283 * 89.99125 * 11 10 9 14 14 C 1.52594 * 111.01859 * 197.04246 * 13 11 10 15 15 C 1.53308 * 108.45751 * 62.28940 * 14 13 11 16 16 C 1.52814 * 108.15478 * 296.15184 * 15 14 13 17 17 H 1.08997 * 109.04672 * 179.63412 * 16 15 14 18 18 N 1.46505 * 109.04374 * 298.58294 * 16 15 14 19 19 C 1.36942 * 119.99586 * 276.04697 * 18 16 15 20 20 H 1.07994 * 119.99742 * 359.71799 * 19 18 16 21 21 C 1.38812 * 119.99509 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99568 * 179.71807 * 21 19 18 23 23 Si 1.86797 * 120.00387 * 359.72134 * 21 19 18 24 24 H 1.48502 * 109.47155 * 89.99593 * 23 21 19 25 25 H 1.48490 * 109.47224 * 209.99929 * 23 21 19 26 26 H 1.48501 * 109.47223 * 330.00114 * 23 21 19 27 27 C 1.50861 * 111.60684 * 59.10289 * 16 15 14 28 28 H 1.08997 * 109.65325 * 184.93280 * 27 16 15 29 29 C 1.47925 * 125.74851 * 174.85525 * 9 7 6 30 30 H 1.09003 * 109.46877 * 274.45874 * 1 2 3 31 31 H 1.09002 * 109.47141 * 34.45550 * 1 2 3 32 32 H 1.08997 * 109.46908 * 154.45979 * 1 2 3 33 33 H 1.08001 * 125.56572 * 359.97438 * 3 2 1 34 34 H 1.08005 * 126.06386 * 180.02562 * 4 3 2 35 35 H 1.08004 * 126.45894 * 180.27335 * 5 4 3 36 36 H 1.08997 * 110.00853 * 61.70759 * 10 9 7 37 37 H 1.09001 * 110.00885 * 300.34932 * 10 9 7 38 38 H 1.09000 * 109.16611 * 76.64529 * 13 11 10 39 39 H 1.08998 * 109.16481 * 317.43967 * 13 11 10 40 40 H 1.09002 * 109.63998 * 302.59695 * 14 13 11 41 41 H 1.09003 * 109.63756 * 181.98335 * 14 13 11 42 42 H 1.09000 * 109.72421 * 176.48728 * 15 14 13 43 43 H 1.09002 * 109.76329 * 55.83804 * 15 14 13 44 44 H 0.96995 * 120.00529 * 96.03867 * 18 16 15 45 45 H 0.97000 * 119.99847 * 179.97438 * 22 21 19 46 46 H 1.09004 * 110.57066 * 323.08445 * 29 9 7 47 47 H 1.08995 * 110.57544 * 85.80657 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0071 6 6 2.2679 -1.1182 0.0005 7 6 1.8125 -2.5124 0.0006 8 8 0.6274 -2.7655 -0.1117 9 7 2.7064 -3.5134 0.1251 10 6 4.1716 -3.3594 0.1621 11 6 4.7690 -4.7887 0.2892 12 1 5.6879 -4.8063 0.8753 13 6 4.9837 -5.2971 -1.1377 14 6 5.1646 -6.8122 -1.1575 15 6 3.8801 -7.4613 -0.6294 16 6 3.6996 -7.0423 0.8291 17 1 2.7856 -7.4912 1.2177 18 7 4.8398 -7.5278 1.6105 19 6 4.8447 -8.8105 2.0900 20 1 4.0061 -9.4627 1.8959 21 6 5.9253 -9.2706 2.8299 22 7 5.9276 -10.5018 3.2955 23 14 7.3761 -8.1427 3.1650 24 1 7.1440 -7.4002 4.4299 25 1 8.6149 -8.9524 3.2865 26 1 7.5227 -7.1787 2.0450 27 6 3.6098 -5.5429 0.9692 28 1 3.5698 -5.2751 2.0251 29 6 2.3821 -4.9514 0.2483 30 1 -0.3633 0.0799 1.0246 31 1 -0.3633 0.8474 -0.5814 32 1 -0.3633 -0.9272 -0.4431 33 1 1.9082 2.1236 -0.0004 34 1 4.4133 1.3612 0.0011 35 1 4.4583 -1.3144 0.0133 36 1 4.4617 -2.7562 1.0224 37 1 4.5206 -2.8898 -0.7576 38 1 5.8728 -4.8250 -1.5558 39 1 4.1190 -5.0319 -1.7460 40 1 6.0041 -7.0893 -0.5197 41 1 5.3507 -7.1456 -2.1784 42 1 3.9632 -8.5463 -0.6929 43 1 3.0272 -7.1227 -1.2177 44 1 5.5913 -6.9407 1.7882 45 1 6.6828 -10.8235 3.8122 46 1 1.4814 -5.0910 0.8462 47 1 2.2604 -5.4023 -0.7365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992624049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:12 Heat of formation + Delta-G solvation = 40.247401 kcal Electronic energy + Delta-G solvation = -27534.386877 eV Core-core repulsion = 23911.505167 eV Total energy + Delta-G solvation = -3622.881711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63961 -40.39854 -38.36960 -35.82686 -33.58542 -33.00115 -31.63441 -30.97545 -30.05079 -29.01500 -26.98297 -26.43576 -25.02480 -23.07108 -22.09329 -21.39713 -21.27992 -20.56822 -19.35676 -18.26615 -17.66931 -17.12003 -16.38408 -16.13408 -15.62115 -15.23575 -14.75431 -14.55037 -14.26473 -14.04946 -13.81055 -13.57546 -13.53545 -13.16081 -12.99981 -12.83963 -12.65526 -12.52893 -12.29549 -12.17820 -12.01968 -11.69872 -11.52790 -11.19169 -11.07667 -10.92985 -10.72350 -10.28656 -10.13889 -9.98523 -9.84728 -9.60639 -9.55074 -8.96486 -8.89113 -8.72657 -8.37765 -7.27173 -5.77183 -3.12458 1.32298 2.38005 2.55358 3.12219 3.26593 3.35111 3.37747 3.44457 4.33140 4.47503 4.57996 4.60204 4.72858 4.78881 4.84105 4.98115 5.14913 5.19890 5.21526 5.31194 5.37828 5.40842 5.46784 5.51093 5.58528 5.68426 5.69709 5.77662 5.85872 5.86622 5.94124 5.96919 6.02148 6.02758 6.22458 6.27816 6.30606 6.37077 6.59227 6.70054 6.75038 6.78044 6.89704 6.98704 6.99266 7.42552 7.99358 8.05845 8.41917 9.20411 9.92670 10.12660 11.41355 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021747 B = 0.003302 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.245268 B = 8477.198170 C = 8798.647294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.413 5.413 3 C 0.011 3.989 4 C -0.210 4.210 5 C -0.153 4.153 6 C -0.046 4.046 7 C 0.602 3.398 8 O -0.556 6.556 9 N -0.602 5.602 10 C 0.095 3.905 11 C -0.092 4.092 12 H 0.098 0.902 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.135 4.135 16 C 0.194 3.806 17 H 0.057 0.943 18 N -0.744 5.744 19 C -0.239 4.239 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.882 3.118 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.276 1.276 27 C -0.100 4.100 28 H 0.082 0.918 29 C 0.119 3.881 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.167 0.833 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.079 0.921 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 22.995 -9.385 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.085 5.085 3 C -0.125 4.125 4 C -0.234 4.234 5 C -0.179 4.179 6 C -0.160 4.160 7 C 0.392 3.608 8 O -0.437 6.437 9 N -0.335 5.335 10 C -0.028 4.028 11 C -0.111 4.111 12 H 0.116 0.884 13 C -0.148 4.148 14 C -0.151 4.151 15 C -0.175 4.175 16 C 0.085 3.915 17 H 0.075 0.925 18 N -0.387 5.387 19 C -0.369 4.369 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.712 3.288 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.120 4.120 28 H 0.101 0.899 29 C -0.003 4.003 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.184 0.816 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.871 22.645 -9.375 25.454 hybrid contribution 1.211 0.889 0.365 1.546 sum -5.660 23.534 -9.010 25.828 Atomic orbital electron populations 1.22342 0.76204 1.05819 1.03639 1.43852 1.06794 1.04946 1.52957 1.22019 0.90807 0.91446 1.08198 1.20870 0.95968 0.95166 1.11392 1.21997 0.95224 0.95625 1.05030 1.19990 0.90506 0.87442 1.18040 1.16568 0.84649 0.82887 0.76686 1.90752 1.16117 1.84535 1.52253 1.48237 1.06773 1.06905 1.71574 1.22905 0.79695 0.98544 1.01647 1.22318 0.98689 0.92462 0.97627 0.88399 1.21560 1.01072 0.97209 0.95001 1.21400 0.99800 0.93647 1.00249 1.22178 0.96233 1.01210 0.97888 1.19485 0.92178 0.88969 0.90910 0.92505 1.42748 1.19140 1.13037 1.63726 1.19067 1.03971 0.87778 1.26108 0.89190 1.24656 0.98109 0.96106 1.00282 1.69700 1.31899 1.15541 1.41133 0.86595 0.83584 0.80480 0.78126 1.21182 1.21855 1.20259 1.21928 0.93126 0.96925 0.99981 0.89941 1.22334 0.98562 0.78283 1.01158 0.90745 0.90104 0.87300 0.81561 0.84044 0.82665 0.90785 0.90563 0.92424 0.92289 0.90794 0.93038 0.91295 0.93351 0.80676 0.93104 0.90236 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.77 59.85 0.64 1.18 16 2 N -0.41 -4.52 3.16 -120.23 -0.38 -4.90 16 3 C 0.01 0.09 11.38 -16.91 -0.19 -0.10 16 4 C -0.21 -1.99 10.81 -39.98 -0.43 -2.43 16 5 C -0.15 -1.67 9.34 -39.12 -0.37 -2.04 16 6 C -0.05 -0.59 6.86 -81.98 -0.56 -1.16 16 7 C 0.60 8.77 7.81 -12.86 -0.10 8.67 16 8 O -0.56 -9.36 14.88 5.19 0.08 -9.28 16 9 N -0.60 -7.98 3.34 -171.12 -0.57 -8.55 16 10 C 0.09 1.05 4.27 -2.27 -0.01 1.04 16 11 C -0.09 -1.16 3.27 -88.75 -0.29 -1.45 16 12 H 0.10 1.26 7.93 -51.93 -0.41 0.85 16 13 C -0.11 -1.37 4.60 -26.94 -0.12 -1.50 16 14 C -0.11 -1.69 5.85 -26.78 -0.16 -1.85 16 15 C -0.14 -2.18 5.42 -26.67 -0.14 -2.33 16 16 C 0.19 3.43 2.53 -69.10 -0.18 3.25 16 17 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 18 N -0.74 -16.26 3.97 -54.57 -0.22 -16.47 16 19 C -0.24 -6.44 10.38 -15.06 -0.16 -6.59 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -28.88 13.97 55.49 0.78 -28.10 16 23 Si 0.88 21.42 27.73 -169.99 -4.71 16.70 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.18 6.53 56.52 0.37 -5.81 16 27 C -0.10 -1.45 2.42 -90.50 -0.22 -1.67 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 C 0.12 1.63 5.78 -2.65 -0.02 1.61 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 1.18 5.97 -51.93 -0.31 0.87 16 33 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 35 H 0.16 1.46 4.42 -52.48 -0.23 1.23 16 36 H 0.07 0.76 6.89 -51.93 -0.36 0.40 16 37 H 0.08 0.74 6.61 -51.93 -0.34 0.40 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.72 6.93 -51.93 -0.36 0.36 16 40 H 0.07 1.29 7.38 -51.93 -0.38 0.91 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 44 H 0.36 7.74 5.09 -40.82 -0.21 7.53 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 47 H 0.08 1.03 5.79 -51.93 -0.30 0.73 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -32.68 356.03 -9.13 -41.81 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.07 Total: 8.78 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.39 Total: -5.35 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.39 Total: -58.03 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.68 -9.13 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992624049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.058 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds