Wall clock time and date at job start Tue Mar 31 2020 11:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35536 * 125.67607 * 2 1 4 4 C 1.35450 * 108.86688 * 179.97438 * 3 2 1 5 5 C 1.39832 * 107.86750 * 359.73664 * 4 3 2 6 6 C 1.37654 * 125.67706 * 179.97438 * 2 1 3 7 7 C 1.46672 * 126.23313 * 0.02562 * 6 2 1 8 8 O 1.21698 * 120.00180 * 6.09564 * 7 6 2 9 9 N 1.34777 * 120.00154 * 186.09778 * 7 6 2 10 10 C 1.47380 * 125.74110 * 354.88712 * 9 7 6 11 11 C 1.55434 * 106.73957 * 181.02737 * 10 9 7 12 12 H 1.09004 * 112.50667 * 213.26907 * 11 10 9 13 13 C 1.52995 * 106.45283 * 89.99125 * 11 10 9 14 14 C 1.52594 * 111.01859 * 197.04246 * 13 11 10 15 15 C 1.53308 * 108.45751 * 62.28940 * 14 13 11 16 16 C 1.52814 * 108.15478 * 296.15184 * 15 14 13 17 17 H 1.08997 * 109.04672 * 179.63412 * 16 15 14 18 18 N 1.46505 * 109.04374 * 298.58294 * 16 15 14 19 19 C 1.36942 * 119.99586 * 276.04697 * 18 16 15 20 20 H 1.07994 * 119.99742 * 359.71799 * 19 18 16 21 21 C 1.38812 * 119.99509 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99568 * 179.71807 * 21 19 18 23 23 Si 1.86797 * 120.00387 * 359.72134 * 21 19 18 24 24 H 1.48502 * 109.47155 * 89.99593 * 23 21 19 25 25 H 1.48490 * 109.47224 * 209.99929 * 23 21 19 26 26 H 1.48501 * 109.47223 * 330.00114 * 23 21 19 27 27 C 1.50861 * 111.60684 * 59.10289 * 16 15 14 28 28 H 1.08997 * 109.65325 * 184.93280 * 27 16 15 29 29 C 1.47925 * 125.74851 * 174.85525 * 9 7 6 30 30 H 1.09003 * 109.46877 * 274.45874 * 1 2 3 31 31 H 1.09002 * 109.47141 * 34.45550 * 1 2 3 32 32 H 1.08997 * 109.46908 * 154.45979 * 1 2 3 33 33 H 1.08001 * 125.56572 * 359.97438 * 3 2 1 34 34 H 1.08005 * 126.06386 * 180.02562 * 4 3 2 35 35 H 1.08004 * 126.45894 * 180.27335 * 5 4 3 36 36 H 1.08997 * 110.00853 * 61.70759 * 10 9 7 37 37 H 1.09001 * 110.00885 * 300.34932 * 10 9 7 38 38 H 1.09000 * 109.16611 * 76.64529 * 13 11 10 39 39 H 1.08998 * 109.16481 * 317.43967 * 13 11 10 40 40 H 1.09002 * 109.63998 * 302.59695 * 14 13 11 41 41 H 1.09003 * 109.63756 * 181.98335 * 14 13 11 42 42 H 1.09000 * 109.72421 * 176.48728 * 15 14 13 43 43 H 1.09002 * 109.76329 * 55.83804 * 15 14 13 44 44 H 0.96995 * 120.00529 * 96.03867 * 18 16 15 45 45 H 0.97000 * 119.99847 * 179.97438 * 22 21 19 46 46 H 1.09004 * 110.57066 * 323.08445 * 29 9 7 47 47 H 1.08995 * 110.57544 * 85.80657 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0071 6 6 2.2679 -1.1182 0.0005 7 6 1.8125 -2.5124 0.0006 8 8 0.6274 -2.7655 -0.1117 9 7 2.7064 -3.5134 0.1251 10 6 4.1716 -3.3594 0.1621 11 6 4.7690 -4.7887 0.2892 12 1 5.6879 -4.8063 0.8753 13 6 4.9837 -5.2971 -1.1377 14 6 5.1646 -6.8122 -1.1575 15 6 3.8801 -7.4613 -0.6294 16 6 3.6996 -7.0423 0.8291 17 1 2.7856 -7.4912 1.2177 18 7 4.8398 -7.5278 1.6105 19 6 4.8447 -8.8105 2.0900 20 1 4.0061 -9.4627 1.8959 21 6 5.9253 -9.2706 2.8299 22 7 5.9276 -10.5018 3.2955 23 14 7.3761 -8.1427 3.1650 24 1 7.1440 -7.4002 4.4299 25 1 8.6149 -8.9524 3.2865 26 1 7.5227 -7.1787 2.0450 27 6 3.6098 -5.5429 0.9692 28 1 3.5698 -5.2751 2.0251 29 6 2.3821 -4.9514 0.2483 30 1 -0.3633 0.0799 1.0246 31 1 -0.3633 0.8474 -0.5814 32 1 -0.3633 -0.9272 -0.4431 33 1 1.9082 2.1236 -0.0004 34 1 4.4133 1.3612 0.0011 35 1 4.4583 -1.3144 0.0133 36 1 4.4617 -2.7562 1.0224 37 1 4.5206 -2.8898 -0.7576 38 1 5.8728 -4.8250 -1.5558 39 1 4.1190 -5.0319 -1.7460 40 1 6.0041 -7.0893 -0.5197 41 1 5.3507 -7.1456 -2.1784 42 1 3.9632 -8.5463 -0.6929 43 1 3.0272 -7.1227 -1.2177 44 1 5.5913 -6.9407 1.7882 45 1 6.6828 -10.8235 3.8122 46 1 1.4814 -5.0910 0.8462 47 1 2.2604 -5.4023 -0.7365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992624049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:10 Heat of formation + Delta-G solvation = 20.202434 kcal Electronic energy + Delta-G solvation = -27535.256092 eV Core-core repulsion = 23911.505167 eV Total energy + Delta-G solvation = -3623.750926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.46482 -41.46015 -39.49872 -37.17931 -35.16366 -33.79323 -33.33241 -32.09883 -31.44674 -30.05525 -28.01055 -27.30297 -26.28426 -24.70790 -23.32750 -22.59197 -22.21366 -21.43817 -20.22980 -19.90675 -19.23569 -18.11045 -17.35598 -17.27028 -16.54018 -16.50731 -16.04434 -15.85083 -15.57791 -15.27553 -15.02194 -14.67826 -14.55304 -14.35370 -14.13907 -14.00993 -13.88765 -13.63247 -13.22908 -13.16072 -12.95576 -12.91112 -12.85245 -12.69182 -12.54882 -12.21338 -12.09613 -12.00245 -11.78566 -11.39296 -11.20444 -11.03350 -10.86591 -10.70410 -9.80822 -9.64656 -9.25586 -9.15420 -7.97448 -5.29864 0.46650 1.39895 1.44398 1.51581 1.54368 1.84368 2.26906 2.33141 2.52946 3.27853 3.34275 3.42752 3.59794 3.77328 3.98329 4.00675 4.16504 4.20751 4.24213 4.31336 4.35788 4.38295 4.45790 4.52082 4.53553 4.60501 4.63454 4.72685 4.74863 4.78123 4.82526 4.87345 5.05286 5.10565 5.15350 5.20945 5.25394 5.29106 5.38406 5.46265 5.60596 5.66077 5.83471 5.86018 6.01966 6.26456 6.32643 6.43246 7.02722 7.13623 7.89127 8.10181 9.24620 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021747 B = 0.003302 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.245268 B = 8477.198170 C = 8798.647294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.423 5.423 3 C 0.023 3.977 4 C -0.222 4.222 5 C -0.147 4.147 6 C -0.087 4.087 7 C 0.595 3.405 8 O -0.592 6.592 9 N -0.603 5.603 10 C 0.101 3.899 11 C -0.090 4.090 12 H 0.103 0.897 13 C -0.104 4.104 14 C -0.111 4.111 15 C -0.130 4.130 16 C 0.192 3.808 17 H 0.035 0.965 18 N -0.742 5.742 19 C -0.220 4.220 20 H 0.052 0.948 21 C -0.068 4.068 22 N -0.989 5.989 23 Si 0.952 3.048 24 H -0.281 1.281 25 H -0.301 1.301 26 H -0.242 1.242 27 C -0.093 4.093 28 H 0.072 0.928 29 C 0.125 3.875 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.203 0.797 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.065 0.935 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 27.473 -10.716 29.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.096 5.096 3 C -0.113 4.113 4 C -0.245 4.245 5 C -0.174 4.174 6 C -0.200 4.200 7 C 0.387 3.613 8 O -0.476 6.476 9 N -0.334 5.334 10 C -0.021 4.021 11 C -0.109 4.109 12 H 0.122 0.878 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.170 4.170 16 C 0.084 3.916 17 H 0.053 0.947 18 N -0.385 5.385 19 C -0.351 4.351 20 H 0.070 0.930 21 C -0.259 4.259 22 N -0.640 5.640 23 Si 0.779 3.221 24 H -0.208 1.208 25 H -0.228 1.228 26 H -0.166 1.166 27 C -0.112 4.112 28 H 0.091 0.909 29 C 0.002 3.998 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.220 0.780 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.201 0.799 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.402 27.170 -10.747 29.714 hybrid contribution 0.609 -0.497 0.746 1.083 sum -4.793 26.674 -10.001 28.887 Atomic orbital electron populations 1.22391 0.75545 1.05818 1.04299 1.44112 1.07496 1.05065 1.52938 1.22716 0.90634 0.92383 1.05528 1.21251 0.97100 0.94819 1.11366 1.22277 0.94812 0.96702 1.03587 1.19910 0.91708 0.86932 1.21434 1.16957 0.84283 0.83939 0.76120 1.90728 1.17587 1.85185 1.54094 1.48243 1.07740 1.06196 1.71271 1.23001 0.78058 0.97602 1.03431 1.22344 0.97910 0.93012 0.97643 0.87846 1.21523 1.02630 0.95035 0.94902 1.21362 0.97509 0.95652 1.00314 1.22065 0.98453 0.99451 0.97024 1.19615 0.89754 0.91140 0.91133 0.94708 1.42662 1.20586 1.11230 1.64044 1.18988 1.02303 0.89171 1.24683 0.92964 1.25488 1.01628 0.97788 1.00980 1.69900 1.32985 1.18122 1.43031 0.85453 0.78868 0.78768 0.79013 1.20765 1.22813 1.16585 1.21684 0.95080 0.94557 0.99927 0.90947 1.22149 0.97492 0.79212 1.00900 0.90286 0.86892 0.89944 0.78002 0.81683 0.81352 0.89469 0.88277 0.89782 0.91628 0.93194 0.91636 0.94432 0.91067 0.79944 0.93582 0.91673 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 10.77 127.77 1.38 2.34 16 2 N -0.42 -8.31 3.16 -534.30 -1.69 -10.00 16 3 C 0.02 0.33 11.38 83.48 0.95 1.28 16 4 C -0.22 -3.33 10.81 22.01 0.24 -3.09 16 5 C -0.15 -2.74 9.34 22.57 0.21 -2.53 16 6 C -0.09 -2.07 6.86 40.35 0.28 -1.79 16 7 C 0.59 16.89 7.81 86.45 0.68 17.57 16 8 O -0.59 -20.30 14.88 -4.34 -0.06 -20.36 16 9 N -0.60 -15.03 3.34 -813.53 -2.72 -17.75 16 10 C 0.10 1.89 4.27 87.05 0.37 2.26 16 11 C -0.09 -2.01 3.27 -9.58 -0.03 -2.04 16 12 H 0.10 2.26 7.93 -2.39 -0.02 2.24 16 13 C -0.10 -2.19 4.60 30.46 0.14 -2.05 16 14 C -0.11 -3.08 5.85 30.56 0.18 -2.90 16 15 C -0.13 -4.19 5.42 30.64 0.17 -4.02 16 16 C 0.19 6.84 2.53 44.23 0.11 6.95 16 17 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 18 N -0.74 -32.52 3.97 -326.55 -1.30 -33.82 16 19 C -0.22 -12.25 10.38 84.03 0.87 -11.38 16 20 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.99 -63.51 13.97 21.65 0.30 -63.21 16 23 Si 0.95 44.28 27.73 68.60 1.90 46.18 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 26 H -0.24 -9.74 6.53 99.48 0.65 -9.09 16 27 C -0.09 -2.61 2.42 -10.72 -0.03 -2.64 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 C 0.13 3.36 5.78 86.50 0.50 3.86 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.80 5.97 -2.39 -0.01 1.79 16 33 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.17 2.48 4.42 -2.91 -0.01 2.46 16 36 H 0.09 1.46 6.89 -2.39 -0.02 1.45 16 37 H 0.10 1.48 6.61 -2.39 -0.02 1.46 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.34 6.93 -2.39 -0.02 1.33 16 40 H 0.05 1.64 7.38 -2.39 -0.02 1.62 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.96 6.70 -2.39 -0.02 1.95 16 44 H 0.37 15.18 5.09 -92.71 -0.47 14.71 16 45 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 46 H 0.06 1.93 8.10 -2.38 -0.02 1.91 16 47 H 0.08 2.10 5.79 -2.39 -0.01 2.08 16 Total: -1.00 -74.97 356.03 3.36 -71.61 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.45 Total: 29.03 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 6.48 Total: -1.68 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -5.40 Total: -124.78 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.18 kcal Total: -74.97 3.36 -71.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992624049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.809 kcal (2) G-P(sol) polarization free energy of solvation -74.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds