Wall clock time and date at job start Tue Mar 31 2020 11:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35537 * 125.67637 * 2 1 4 4 C 1.35458 * 108.86904 * 179.83483 * 3 2 1 5 5 C 1.39825 * 107.86506 * 0.42519 * 4 3 2 6 6 C 1.37655 * 125.68015 * 180.31012 * 2 1 3 7 7 C 1.46677 * 126.23045 * 359.97199 * 6 2 1 8 8 O 1.21694 * 120.00234 * 6.80118 * 7 6 2 9 9 N 1.34774 * 119.99672 * 186.79426 * 7 6 2 10 10 C 1.48663 * 125.78600 * 5.65794 * 9 7 6 11 11 C 1.53317 * 103.31733 * 155.51228 * 10 9 7 12 12 H 1.09004 * 111.57664 * 284.31198 * 11 10 9 13 13 C 1.51303 * 116.99080 * 156.45432 * 11 10 9 14 14 C 1.53808 * 107.43745 * 184.32595 * 13 11 10 15 15 C 1.52522 * 111.70513 * 57.28880 * 14 13 11 16 16 C 1.53842 * 111.66288 * 305.95785 * 15 14 13 17 17 H 1.09009 * 109.94024 * 297.81289 * 16 15 14 18 18 N 1.46498 * 110.01306 * 176.61880 * 16 15 14 19 19 C 1.36944 * 120.00042 * 87.36107 * 18 16 15 20 20 H 1.08000 * 119.99884 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00363 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99841 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00346 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47271 * 59.99875 * 23 21 19 25 25 H 1.48500 * 109.47218 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46939 * 299.99933 * 23 21 19 27 27 C 1.51441 * 107.04277 * 57.19554 * 16 15 14 28 28 H 1.09007 * 109.87044 * 54.70126 * 27 16 15 29 29 C 1.48240 * 125.78456 * 185.95427 * 9 7 6 30 30 H 1.09004 * 109.46984 * 264.54623 * 1 2 3 31 31 H 1.08997 * 109.47104 * 144.55377 * 1 2 3 32 32 H 1.09002 * 109.47365 * 24.54657 * 1 2 3 33 33 H 1.07998 * 125.56633 * 0.02562 * 3 2 1 34 34 H 1.08000 * 126.06415 * 180.16937 * 4 3 2 35 35 H 1.08008 * 126.45419 * 179.71914 * 5 4 3 36 36 H 1.09007 * 110.61999 * 274.09622 * 10 9 7 37 37 H 1.08997 * 110.62740 * 37.11898 * 10 9 7 38 38 H 1.09004 * 109.94251 * 64.70077 * 13 11 10 39 39 H 1.09003 * 109.60060 * 303.75604 * 13 11 10 40 40 H 1.09003 * 109.03641 * 296.71334 * 14 13 11 41 41 H 1.09000 * 109.03538 * 177.85946 * 14 13 11 42 42 H 1.09002 * 109.04419 * 185.40153 * 15 14 13 43 43 H 1.08997 * 109.04791 * 66.51916 * 15 14 13 44 44 H 0.96996 * 120.00607 * 267.36297 * 18 16 15 45 45 H 0.96998 * 120.00080 * 179.97438 * 22 21 19 46 46 H 1.08994 * 110.17469 * 295.92692 * 29 9 7 47 47 H 1.09001 * 110.16871 * 57.65072 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 0.0037 5 6 3.5780 -0.6887 -0.0038 6 6 2.2678 -1.1181 -0.0061 7 6 1.8124 -2.5124 -0.0130 8 8 0.6287 -2.7653 -0.1387 9 7 2.7050 -3.5135 0.1196 10 6 4.1565 -3.3528 0.3979 11 6 4.5400 -4.6849 1.0529 12 1 4.1929 -4.7389 2.0848 13 6 5.9943 -5.0950 0.9746 14 6 6.1118 -6.4973 1.5955 15 6 5.2061 -7.5031 0.8925 16 6 3.7463 -7.0195 0.8491 17 1 3.3594 -6.9138 1.8628 18 7 2.9247 -7.9718 0.0980 19 6 2.3584 -9.0416 0.7383 20 1 2.5170 -9.1831 1.7972 21 6 1.5803 -9.9443 0.0265 22 7 1.3873 -9.7722 -1.2641 23 14 0.8072 -11.4032 0.9001 24 1 -0.0984 -10.9157 1.9712 25 1 0.0312 -12.2101 -0.0756 26 1 1.8747 -12.2440 1.4990 27 6 3.7448 -5.6746 0.1530 28 1 4.2276 -5.7608 -0.8206 29 6 2.4069 -4.9612 0.0065 30 1 -0.3633 -0.0977 1.0231 31 1 -0.3633 -0.8372 -0.5960 32 1 -0.3634 0.9348 -0.4269 33 1 1.9081 2.1236 0.0004 34 1 4.4132 1.3612 0.0072 35 1 4.4584 -1.3143 -0.0075 36 1 4.7109 -3.2038 -0.5287 37 1 4.3262 -2.5243 1.0856 38 1 6.6102 -4.3889 1.5316 39 1 6.3109 -5.1223 -0.0681 40 1 5.8345 -6.4443 2.6483 41 1 7.1453 -6.8349 1.5181 42 1 5.2500 -8.4537 1.4242 43 1 5.5622 -7.6507 -0.1270 44 1 2.7819 -7.8447 -0.8530 45 1 0.8439 -10.4032 -1.7616 46 1 1.7281 -5.2685 0.8019 47 1 1.9678 -5.1795 -0.9670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992624054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:18 Heat of formation + Delta-G solvation = 34.503657 kcal Electronic energy + Delta-G solvation = -27219.890353 eV Core-core repulsion = 23596.759575 eV Total energy + Delta-G solvation = -3623.130778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.51253 -40.10261 -38.20216 -35.61101 -33.98686 -33.01607 -31.55890 -30.86145 -29.47424 -28.51088 -26.93129 -26.42248 -24.96307 -23.42294 -21.79529 -21.18131 -20.48189 -20.15587 -19.64385 -19.17736 -17.31104 -16.99444 -16.11455 -15.91114 -15.41892 -15.02376 -14.93179 -14.33336 -14.18821 -13.89169 -13.72939 -13.52835 -13.41221 -13.05583 -12.85434 -12.67864 -12.51153 -12.45219 -12.26757 -12.17778 -11.97068 -11.69316 -11.24322 -10.98352 -10.86455 -10.77075 -10.48586 -10.23766 -10.20852 -10.14156 -9.83603 -9.75803 -9.43884 -8.87608 -8.86427 -8.58927 -8.26655 -6.95102 -5.74633 -3.03716 1.44601 2.49784 2.63378 3.23631 3.41545 3.45620 3.50295 3.51019 4.37936 4.55899 4.60589 4.66854 4.82326 4.86148 4.98694 5.10472 5.25364 5.27753 5.29342 5.39996 5.41869 5.50317 5.51488 5.58436 5.63522 5.73764 5.84586 5.90721 5.92682 5.95896 6.01855 6.09554 6.09944 6.17404 6.26954 6.38026 6.44929 6.54734 6.61147 6.65566 6.69090 6.86366 6.88329 7.07922 7.09953 7.60509 7.71498 8.24911 8.43477 9.54882 10.11393 10.46010 11.47740 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.003466 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.629337 B = 8077.528689 C = 9529.998859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.412 5.412 3 C 0.008 3.992 4 C -0.210 4.210 5 C -0.155 4.155 6 C -0.042 4.042 7 C 0.597 3.403 8 O -0.551 6.551 9 N -0.608 5.608 10 C 0.103 3.897 11 C -0.108 4.108 12 H 0.085 0.915 13 C -0.100 4.100 14 C -0.114 4.114 15 C -0.138 4.138 16 C 0.196 3.804 17 H 0.051 0.949 18 N -0.722 5.722 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.103 4.103 28 H 0.078 0.922 29 C 0.130 3.870 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.075 0.925 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 21.615 3.572 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.085 5.085 3 C -0.127 4.127 4 C -0.234 4.234 5 C -0.181 4.181 6 C -0.156 4.156 7 C 0.387 3.613 8 O -0.431 6.431 9 N -0.341 5.341 10 C -0.019 4.019 11 C -0.127 4.127 12 H 0.104 0.896 13 C -0.138 4.138 14 C -0.152 4.152 15 C -0.179 4.179 16 C 0.086 3.914 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.123 4.123 28 H 0.096 0.904 29 C 0.009 3.991 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.184 0.816 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.765 21.343 3.594 22.676 hybrid contribution -0.468 -0.765 0.071 0.899 sum 6.297 20.579 3.665 21.831 Atomic orbital electron populations 1.22262 0.76145 1.04828 1.04245 1.43869 1.06835 1.05005 1.52810 1.22006 0.90815 0.91393 1.08481 1.20842 0.95908 0.95133 1.11558 1.21900 0.95112 0.95503 1.05546 1.20078 0.90475 0.87512 1.17501 1.16587 0.84751 0.82847 0.77086 1.90796 1.15962 1.84528 1.51814 1.48795 1.08669 1.06663 1.69985 1.22527 0.80902 0.98488 1.00003 1.22105 0.96845 0.93685 1.00106 0.89631 1.21250 0.94317 0.96908 1.01364 1.21530 0.99472 0.94488 0.99756 1.22319 0.96999 0.98285 1.00266 1.19929 0.90145 0.86476 0.94893 0.93080 1.42390 1.57582 1.27343 1.08874 1.19174 1.23745 1.01135 0.93051 0.91272 1.24724 1.00942 0.99364 0.95720 1.69645 1.43725 1.38331 1.06284 0.86301 0.79054 0.82677 0.78348 1.21280 1.21750 1.21338 1.22178 0.94300 0.96108 0.99738 0.90351 1.21624 0.97830 0.76699 1.02964 0.90650 0.87909 0.89960 0.81628 0.84114 0.82771 0.90760 0.89581 0.92015 0.91658 0.92578 0.92674 0.92027 0.92711 0.78211 0.93473 0.90639 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.52 59.84 0.63 1.29 16 2 N -0.41 -4.91 3.16 -120.23 -0.38 -5.29 16 3 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 4 C -0.21 -2.06 10.81 -39.98 -0.43 -2.49 16 5 C -0.15 -1.76 9.17 -39.12 -0.36 -2.12 16 6 C -0.04 -0.58 6.83 -81.98 -0.56 -1.14 16 7 C 0.60 9.88 7.81 -12.85 -0.10 9.77 16 8 O -0.55 -10.80 15.11 5.19 0.08 -10.72 16 9 N -0.61 -9.23 3.38 -172.25 -0.58 -9.81 16 10 C 0.10 1.17 4.73 -2.68 -0.01 1.16 16 11 C -0.11 -1.31 2.50 -89.92 -0.23 -1.54 16 12 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 13 C -0.10 -1.07 5.69 -27.17 -0.15 -1.22 16 14 C -0.11 -1.42 5.85 -26.56 -0.16 -1.58 16 15 C -0.14 -2.28 5.47 -26.54 -0.15 -2.43 16 16 C 0.20 3.67 2.53 -68.28 -0.17 3.50 16 17 H 0.05 1.00 8.00 -51.92 -0.42 0.59 16 18 N -0.72 -17.46 5.05 -53.76 -0.27 -17.73 16 19 C -0.24 -6.54 9.95 -15.06 -0.15 -6.69 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 23 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C -0.10 -1.62 1.79 -90.36 -0.16 -1.78 16 28 H 0.08 1.24 7.95 -51.92 -0.41 0.82 16 29 C 0.13 2.25 6.51 -3.43 -0.02 2.23 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.26 6.49 -51.93 -0.34 0.92 16 32 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.15 1.47 4.78 -52.48 -0.25 1.22 16 36 H 0.07 0.76 7.77 -51.92 -0.40 0.35 16 37 H 0.09 0.85 5.96 -51.93 -0.31 0.54 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.68 8.00 -51.93 -0.42 0.27 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.38 9.98 7.81 -40.82 -0.32 9.66 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -32.84 367.94 -9.69 -42.53 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.47 Total: 8.94 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.31 Total: -3.57 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.51 Total: -60.16 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.84 -9.69 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992624054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.034 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds