Wall clock time and date at job start Tue Mar 31 2020 11:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35537 * 125.67637 * 2 1 4 4 C 1.35458 * 108.86904 * 179.83483 * 3 2 1 5 5 C 1.39825 * 107.86506 * 0.42519 * 4 3 2 6 6 C 1.37655 * 125.68015 * 180.31012 * 2 1 3 7 7 C 1.46677 * 126.23045 * 359.97199 * 6 2 1 8 8 O 1.21694 * 120.00234 * 6.80118 * 7 6 2 9 9 N 1.34774 * 119.99672 * 186.79426 * 7 6 2 10 10 C 1.48663 * 125.78600 * 5.65794 * 9 7 6 11 11 C 1.53317 * 103.31733 * 155.51228 * 10 9 7 12 12 H 1.09004 * 111.57664 * 284.31198 * 11 10 9 13 13 C 1.51303 * 116.99080 * 156.45432 * 11 10 9 14 14 C 1.53808 * 107.43745 * 184.32595 * 13 11 10 15 15 C 1.52522 * 111.70513 * 57.28880 * 14 13 11 16 16 C 1.53842 * 111.66288 * 305.95785 * 15 14 13 17 17 H 1.09009 * 109.94024 * 297.81289 * 16 15 14 18 18 N 1.46498 * 110.01306 * 176.61880 * 16 15 14 19 19 C 1.36944 * 120.00042 * 87.36107 * 18 16 15 20 20 H 1.08000 * 119.99884 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00363 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99841 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00346 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47271 * 59.99875 * 23 21 19 25 25 H 1.48500 * 109.47218 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46939 * 299.99933 * 23 21 19 27 27 C 1.51441 * 107.04277 * 57.19554 * 16 15 14 28 28 H 1.09007 * 109.87044 * 54.70126 * 27 16 15 29 29 C 1.48240 * 125.78456 * 185.95427 * 9 7 6 30 30 H 1.09004 * 109.46984 * 264.54623 * 1 2 3 31 31 H 1.08997 * 109.47104 * 144.55377 * 1 2 3 32 32 H 1.09002 * 109.47365 * 24.54657 * 1 2 3 33 33 H 1.07998 * 125.56633 * 0.02562 * 3 2 1 34 34 H 1.08000 * 126.06415 * 180.16937 * 4 3 2 35 35 H 1.08008 * 126.45419 * 179.71914 * 5 4 3 36 36 H 1.09007 * 110.61999 * 274.09622 * 10 9 7 37 37 H 1.08997 * 110.62740 * 37.11898 * 10 9 7 38 38 H 1.09004 * 109.94251 * 64.70077 * 13 11 10 39 39 H 1.09003 * 109.60060 * 303.75604 * 13 11 10 40 40 H 1.09003 * 109.03641 * 296.71334 * 14 13 11 41 41 H 1.09000 * 109.03538 * 177.85946 * 14 13 11 42 42 H 1.09002 * 109.04419 * 185.40153 * 15 14 13 43 43 H 1.08997 * 109.04791 * 66.51916 * 15 14 13 44 44 H 0.96996 * 120.00607 * 267.36297 * 18 16 15 45 45 H 0.96998 * 120.00080 * 179.97438 * 22 21 19 46 46 H 1.08994 * 110.17469 * 295.92692 * 29 9 7 47 47 H 1.09001 * 110.16871 * 57.65072 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 0.0037 5 6 3.5780 -0.6887 -0.0038 6 6 2.2678 -1.1181 -0.0061 7 6 1.8124 -2.5124 -0.0130 8 8 0.6287 -2.7653 -0.1387 9 7 2.7050 -3.5135 0.1196 10 6 4.1565 -3.3528 0.3979 11 6 4.5400 -4.6849 1.0529 12 1 4.1929 -4.7389 2.0848 13 6 5.9943 -5.0950 0.9746 14 6 6.1118 -6.4973 1.5955 15 6 5.2061 -7.5031 0.8925 16 6 3.7463 -7.0195 0.8491 17 1 3.3594 -6.9138 1.8628 18 7 2.9247 -7.9718 0.0980 19 6 2.3584 -9.0416 0.7383 20 1 2.5170 -9.1831 1.7972 21 6 1.5803 -9.9443 0.0265 22 7 1.3873 -9.7722 -1.2641 23 14 0.8072 -11.4032 0.9001 24 1 -0.0984 -10.9157 1.9712 25 1 0.0312 -12.2101 -0.0756 26 1 1.8747 -12.2440 1.4990 27 6 3.7448 -5.6746 0.1530 28 1 4.2276 -5.7608 -0.8206 29 6 2.4069 -4.9612 0.0065 30 1 -0.3633 -0.0977 1.0231 31 1 -0.3633 -0.8372 -0.5960 32 1 -0.3634 0.9348 -0.4269 33 1 1.9081 2.1236 0.0004 34 1 4.4132 1.3612 0.0072 35 1 4.4584 -1.3143 -0.0075 36 1 4.7109 -3.2038 -0.5287 37 1 4.3262 -2.5243 1.0856 38 1 6.6102 -4.3889 1.5316 39 1 6.3109 -5.1223 -0.0681 40 1 5.8345 -6.4443 2.6483 41 1 7.1453 -6.8349 1.5181 42 1 5.2500 -8.4537 1.4242 43 1 5.5622 -7.6507 -0.1270 44 1 2.7819 -7.8447 -0.8530 45 1 0.8439 -10.4032 -1.7616 46 1 1.7281 -5.2685 0.8019 47 1 1.9678 -5.1795 -0.9670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992624054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:17 Heat of formation + Delta-G solvation = 13.932647 kcal Electronic energy + Delta-G solvation = -27220.782379 eV Core-core repulsion = 23596.759575 eV Total energy + Delta-G solvation = -3624.022804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.41724 -41.26471 -39.46607 -37.02666 -35.62138 -33.85374 -33.29652 -32.06449 -30.77713 -29.79007 -28.08442 -27.33193 -26.31270 -25.22694 -22.88314 -22.27400 -21.56830 -21.23213 -20.98049 -20.16658 -19.15461 -18.12748 -17.38443 -17.00195 -16.74251 -16.35381 -16.01233 -15.74654 -15.57204 -15.14986 -15.08385 -14.80553 -14.48902 -14.21735 -14.04391 -13.90045 -13.60664 -13.52744 -13.35018 -13.21873 -13.00245 -12.94306 -12.80542 -12.76004 -12.30985 -12.24530 -12.02383 -11.87596 -11.70911 -11.48515 -11.25989 -11.07199 -10.84352 -10.82888 -9.85819 -9.65369 -9.14769 -8.99109 -7.93871 -5.21666 0.47248 1.44567 1.47598 1.53205 1.53374 1.85747 2.24753 2.32984 2.55336 3.27415 3.38825 3.52596 3.68006 3.81025 3.97280 4.09006 4.20709 4.22566 4.27821 4.33134 4.39836 4.46915 4.50591 4.54586 4.56152 4.63545 4.65020 4.70841 4.72168 4.75793 4.84724 4.90547 5.08359 5.12417 5.21413 5.29264 5.30901 5.34801 5.39757 5.44330 5.52087 5.54008 5.71624 5.87423 6.01295 6.28201 6.34220 6.45012 7.03290 7.34129 8.11149 8.33318 9.29395 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.003466 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.629337 B = 8077.528689 C = 9529.998859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.424 5.424 3 C 0.024 3.976 4 C -0.218 4.218 5 C -0.141 4.141 6 C -0.089 4.089 7 C 0.587 3.413 8 O -0.601 6.601 9 N -0.609 5.609 10 C 0.105 3.895 11 C -0.092 4.092 12 H 0.081 0.919 13 C -0.092 4.092 14 C -0.109 4.109 15 C -0.128 4.128 16 C 0.191 3.809 17 H 0.039 0.961 18 N -0.736 5.736 19 C -0.236 4.236 20 H 0.073 0.927 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.968 3.032 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.276 1.276 27 C -0.098 4.098 28 H 0.080 0.920 29 C 0.136 3.864 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.205 0.795 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.041 0.959 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.037 24.820 4.871 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.098 5.098 3 C -0.111 4.111 4 C -0.241 4.241 5 C -0.167 4.167 6 C -0.202 4.202 7 C 0.379 3.621 8 O -0.485 6.485 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.111 4.111 12 H 0.100 0.900 13 C -0.130 4.130 14 C -0.147 4.147 15 C -0.168 4.168 16 C 0.082 3.918 17 H 0.057 0.943 18 N -0.375 5.375 19 C -0.368 4.368 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.798 3.202 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.202 1.202 27 C -0.118 4.118 28 H 0.099 0.901 29 C 0.014 3.986 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.222 0.778 34 H 0.189 0.811 35 H 0.190 0.810 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.900 24.572 4.946 26.950 hybrid contribution -1.414 -1.630 -0.300 2.178 sum 8.487 22.943 4.646 24.899 Atomic orbital electron populations 1.22282 0.75807 1.05431 1.03956 1.44117 1.07403 1.05220 1.53026 1.22783 0.90709 0.92260 1.05396 1.21267 0.97055 0.94620 1.11154 1.22232 0.94411 0.96763 1.03307 1.19860 0.92010 0.86411 1.21878 1.17205 0.84266 0.84397 0.76196 1.90757 1.18082 1.85455 1.54215 1.48837 1.10438 1.05164 1.69665 1.22798 0.78399 0.98702 1.01602 1.22115 0.97573 0.92532 0.98907 0.90019 1.21258 0.93085 0.96181 1.02461 1.21487 0.99265 0.94401 0.99515 1.22127 0.95837 0.98697 1.00144 1.20164 0.90774 0.86991 0.93874 0.94280 1.42602 1.58563 1.27766 1.08531 1.19557 1.22567 1.01395 0.93296 0.90860 1.25505 1.02441 1.02414 0.96473 1.69810 1.45163 1.39363 1.07742 0.85286 0.78258 0.79588 0.77114 1.20802 1.22348 1.20177 1.22002 0.93988 0.95267 1.00557 0.90127 1.21311 0.98245 0.79129 0.99921 0.90692 0.91139 0.86195 0.77799 0.81109 0.80954 0.88497 0.87016 0.88175 0.90787 0.92000 0.90548 0.94332 0.93532 0.79710 0.94204 0.94006 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 10.52 127.77 1.34 2.64 16 2 N -0.42 -9.46 3.16 -534.31 -1.69 -11.15 16 3 C 0.02 0.36 11.37 83.48 0.95 1.31 16 4 C -0.22 -3.30 10.81 22.01 0.24 -3.06 16 5 C -0.14 -2.75 9.17 22.57 0.21 -2.54 16 6 C -0.09 -2.39 6.83 40.35 0.28 -2.11 16 7 C 0.59 20.22 7.81 86.45 0.68 20.90 16 8 O -0.60 -25.59 15.11 -4.33 -0.07 -25.66 16 9 N -0.61 -18.89 3.38 -817.09 -2.76 -21.66 16 10 C 0.11 2.13 4.73 86.07 0.41 2.54 16 11 C -0.09 -2.02 2.50 -10.34 -0.03 -2.05 16 12 H 0.08 1.92 8.04 -2.38 -0.02 1.90 16 13 C -0.09 -1.56 5.69 30.31 0.17 -1.39 16 14 C -0.11 -2.37 5.85 30.71 0.18 -2.19 16 15 C -0.13 -4.18 5.47 30.72 0.17 -4.01 16 16 C 0.19 7.34 2.53 44.77 0.11 7.46 16 17 H 0.04 1.59 8.00 -2.38 -0.02 1.57 16 18 N -0.74 -37.40 5.05 -324.01 -1.64 -39.04 16 19 C -0.24 -13.34 9.95 84.03 0.84 -12.51 16 20 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 21 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 22 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 23 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 C -0.10 -3.13 1.79 -10.62 -0.02 -3.15 16 28 H 0.08 2.56 7.95 -2.38 -0.02 2.54 16 29 C 0.14 5.10 6.51 85.82 0.56 5.66 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.86 6.49 -2.39 -0.02 1.84 16 32 H 0.12 1.33 8.12 -2.39 -0.02 1.31 16 33 H 0.21 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.17 2.52 4.78 -2.91 -0.01 2.51 16 36 H 0.10 1.60 7.77 -2.38 -0.02 1.58 16 37 H 0.11 1.77 5.96 -2.39 -0.01 1.75 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.21 8.00 -2.39 -0.02 1.19 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.37 20.51 7.81 -92.71 -0.72 19.79 16 45 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 47 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -78.12 367.94 2.95 -75.17 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.24 Total: 30.05 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 6.55 Total: 3.47 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -5.81 Total: -132.58 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.07 Total: -25.66 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -78.12 2.95 -75.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992624054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.104 kcal (2) G-P(sol) polarization free energy of solvation -78.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds