Wall clock time and date at job start Tue Mar 31 2020 11:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35528 * 125.67902 * 2 1 4 4 C 1.35452 * 108.87242 * 180.02562 * 3 2 1 5 5 C 1.39840 * 107.86463 * 359.74187 * 4 3 2 6 6 C 1.37651 * 125.67485 * 180.02562 * 2 1 3 7 7 C 1.46677 * 126.23614 * 359.97438 * 6 2 1 8 8 O 1.21699 * 119.99842 * 8.47283 * 7 6 2 9 9 N 1.34777 * 120.00037 * 188.46838 * 7 6 2 10 10 C 1.48650 * 125.78395 * 358.87456 * 9 7 6 11 11 C 1.53059 * 103.44427 * 155.61534 * 10 9 7 12 12 H 1.08999 * 110.55497 * 284.33950 * 11 10 9 13 13 C 1.51615 * 116.68149 * 155.89354 * 11 10 9 14 14 C 1.53819 * 107.02253 * 183.73562 * 13 11 10 15 15 C 1.52528 * 111.69999 * 57.54007 * 14 13 11 16 16 C 1.53835 * 111.65989 * 305.95619 * 15 14 13 17 17 H 1.09002 * 109.94137 * 176.58702 * 16 15 14 18 18 N 1.46511 * 109.93764 * 297.81379 * 16 15 14 19 19 C 1.36939 * 119.99910 * 207.58389 * 18 16 15 20 20 H 1.07996 * 119.99800 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99685 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99805 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46670 * 90.00117 * 23 21 19 25 25 H 1.48498 * 109.47084 * 210.00135 * 23 21 19 26 26 H 1.48498 * 109.47181 * 329.99838 * 23 21 19 27 27 C 1.51436 * 107.04859 * 57.19921 * 16 15 14 28 28 H 1.08999 * 110.22158 * 54.38044 * 27 16 15 29 29 C 1.48244 * 125.78187 * 178.86995 * 9 7 6 30 30 H 1.08992 * 109.47557 * 264.75519 * 1 2 3 31 31 H 1.08999 * 109.46619 * 24.75502 * 1 2 3 32 32 H 1.08998 * 109.47221 * 144.75118 * 1 2 3 33 33 H 1.08000 * 125.56247 * 0.04214 * 3 2 1 34 34 H 1.08005 * 126.06750 * 180.02562 * 4 3 2 35 35 H 1.07997 * 126.46180 * 180.26417 * 5 4 3 36 36 H 1.08999 * 110.63106 * 274.10405 * 10 9 7 37 37 H 1.09002 * 110.62795 * 37.12900 * 10 9 7 38 38 H 1.09002 * 109.94475 * 303.11497 * 13 11 10 39 39 H 1.08998 * 109.94643 * 64.27675 * 13 11 10 40 40 H 1.09002 * 109.03258 * 178.11441 * 14 13 11 41 41 H 1.08997 * 109.03731 * 297.03907 * 14 13 11 42 42 H 1.08999 * 109.04128 * 66.51392 * 15 14 13 43 43 H 1.08993 * 109.04291 * 185.46388 * 15 14 13 44 44 H 0.96991 * 119.99766 * 27.58604 * 18 16 15 45 45 H 0.96999 * 119.99744 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.17125 * 295.91640 * 29 9 7 47 47 H 1.08999 * 110.17269 * 57.64962 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7092 -0.0006 5 6 3.5780 -0.6889 0.0050 6 6 2.2678 -1.1182 -0.0005 7 6 1.8124 -2.5125 -0.0006 8 8 0.6325 -2.7672 -0.1555 9 7 2.7006 -3.5115 0.1708 10 6 4.1678 -3.3496 0.3465 11 6 4.5791 -4.6202 1.0943 12 1 4.2878 -4.5584 2.1428 13 6 6.0235 -5.0577 0.9500 14 6 6.1676 -6.3910 1.7033 15 6 5.2045 -7.4468 1.1703 16 6 3.7508 -6.9435 1.1752 17 1 3.0958 -7.6948 0.7340 18 7 3.3272 -6.6533 2.5474 19 6 2.0042 -6.7439 2.8891 20 1 1.2733 -7.0296 2.1473 21 6 1.6029 -6.4684 4.1891 22 7 2.4938 -6.1197 5.0930 23 14 -0.2017 -6.5926 4.6555 24 1 -0.4991 -7.9714 5.1201 25 1 -0.4989 -5.6282 5.7449 26 1 -1.0417 -6.2769 3.4723 27 6 3.7166 -5.6772 0.3454 28 1 4.1346 -5.8636 -0.6439 29 6 2.3800 -4.9582 0.2161 30 1 -0.3634 -0.0939 1.0233 31 1 -0.3632 0.9332 -0.4303 32 1 -0.3633 -0.8392 -0.5931 33 1 1.9082 2.1235 0.0006 34 1 4.4133 1.3611 -0.0003 35 1 4.4583 -1.3145 0.0101 36 1 4.6668 -3.2950 -0.6211 37 1 4.3877 -2.4645 0.9435 38 1 6.2662 -5.1977 -0.1035 39 1 6.6842 -4.3090 1.3871 40 1 7.1896 -6.7534 1.5921 41 1 5.9625 -6.2257 2.7609 42 1 5.4883 -7.7043 0.1499 43 1 5.2733 -8.3381 1.7939 44 1 3.9838 -6.3971 3.2136 45 1 2.2132 -5.9269 6.0013 46 1 1.7506 -5.1768 1.0788 47 1 1.8766 -5.2606 -0.7022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992624056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:25 Heat of formation + Delta-G solvation = 42.146816 kcal Electronic energy + Delta-G solvation = -28037.758872 eV Core-core repulsion = 24414.959526 eV Total energy + Delta-G solvation = -3622.799346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.32991 -39.96292 -38.05120 -35.47963 -33.64330 -32.85256 -31.39457 -30.69207 -29.36428 -28.43376 -26.96676 -26.31559 -24.78458 -23.35277 -21.74605 -21.16091 -20.45701 -20.24386 -19.00801 -18.68597 -17.22813 -16.93066 -15.98000 -15.63917 -15.23171 -14.85794 -14.72346 -14.51178 -14.04991 -13.82403 -13.60122 -13.42850 -13.27433 -12.87489 -12.68970 -12.60978 -12.34919 -12.19397 -12.06732 -11.99055 -11.72602 -11.45329 -11.16895 -11.04347 -10.84752 -10.74369 -10.35470 -10.29754 -10.09358 -9.83079 -9.60777 -9.48398 -9.33612 -8.87278 -8.69050 -8.33532 -8.03533 -6.96577 -5.77256 -3.04677 1.64963 2.68794 2.81364 3.44498 3.47904 3.51671 3.53707 3.65390 4.60284 4.64301 4.80245 4.85635 4.98356 5.12601 5.17999 5.26818 5.39525 5.44106 5.49499 5.53483 5.60954 5.64573 5.65963 5.72017 5.81794 5.86390 5.96948 6.01586 6.06550 6.09846 6.13002 6.21059 6.28305 6.35899 6.41336 6.54278 6.63039 6.69619 6.78101 6.85690 6.90613 6.92452 7.03959 7.12413 7.25683 7.71184 7.87321 8.41644 8.48886 9.53941 10.10322 10.45086 11.45020 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.005211 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.991749 B = 5371.692820 C = 7006.166653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.413 5.413 3 C 0.005 3.995 4 C -0.210 4.210 5 C -0.159 4.159 6 C -0.037 4.037 7 C 0.597 3.403 8 O -0.558 6.558 9 N -0.598 5.598 10 C 0.098 3.902 11 C -0.106 4.106 12 H 0.107 0.893 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.121 4.121 16 C 0.189 3.811 17 H 0.053 0.947 18 N -0.715 5.715 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.899 3.101 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.281 1.281 27 C -0.119 4.119 28 H 0.062 0.938 29 C 0.120 3.880 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.101 0.899 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 10.237 -11.813 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.085 5.085 3 C -0.130 4.130 4 C -0.235 4.235 5 C -0.185 4.185 6 C -0.151 4.151 7 C 0.386 3.614 8 O -0.439 6.439 9 N -0.330 5.330 10 C -0.025 4.025 11 C -0.125 4.125 12 H 0.125 0.875 13 C -0.136 4.136 14 C -0.152 4.152 15 C -0.160 4.160 16 C 0.077 3.923 17 H 0.071 0.929 18 N -0.357 5.357 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.730 3.270 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.206 1.206 27 C -0.141 4.141 28 H 0.081 0.919 29 C -0.001 4.001 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.183 0.817 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.220 0.780 45 H 0.064 0.936 46 H 0.119 0.881 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.082 10.084 -11.875 16.387 hybrid contribution -0.837 0.260 0.580 1.051 sum 4.245 10.344 -11.295 15.893 Atomic orbital electron populations 1.22246 0.76279 1.04592 1.04317 1.43844 1.06767 1.05015 1.52916 1.21962 0.90831 0.91333 1.08840 1.20829 0.95848 0.95146 1.11637 1.22009 0.95269 0.95492 1.05715 1.20112 0.90453 0.87605 1.16952 1.16562 0.84727 0.82850 0.77241 1.90759 1.16338 1.84499 1.52291 1.48701 1.07399 1.06788 1.70093 1.22578 0.80381 0.99791 0.99704 1.22141 0.95248 0.92943 1.02195 0.87520 1.21266 0.95224 0.97069 1.00006 1.21452 0.98255 0.94661 1.00842 1.21802 0.95574 0.98402 1.00178 1.19881 0.92853 0.92516 0.87010 0.92865 1.42429 1.06345 1.81759 1.05136 1.19189 0.84646 1.38821 0.94138 0.91161 1.24670 0.97247 1.02328 0.96242 1.69642 1.32173 1.53081 1.02985 0.86301 0.85430 0.77232 0.78011 1.21743 1.21908 1.20638 1.22637 0.94289 0.98562 0.98614 0.91936 1.21841 0.98425 0.77183 1.02653 0.90628 0.90100 0.87972 0.81741 0.84210 0.82505 0.91575 0.89484 0.92310 0.92180 0.92883 0.91417 0.92799 0.91860 0.77997 0.93583 0.88051 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 10.54 59.85 0.63 1.43 16 2 N -0.41 -5.86 3.16 -120.24 -0.38 -6.24 16 3 C 0.01 0.06 11.37 -16.91 -0.19 -0.13 16 4 C -0.21 -2.52 10.81 -39.98 -0.43 -2.95 16 5 C -0.16 -2.21 9.19 -39.12 -0.36 -2.57 16 6 C -0.04 -0.61 6.84 -81.98 -0.56 -1.18 16 7 C 0.60 11.45 7.82 -12.85 -0.10 11.35 16 8 O -0.56 -12.17 15.11 5.19 0.08 -12.09 16 9 N -0.60 -10.76 3.38 -172.41 -0.58 -11.34 16 10 C 0.10 1.42 4.87 -2.82 -0.01 1.40 16 11 C -0.11 -1.66 2.38 -89.89 -0.21 -1.87 16 12 H 0.11 2.11 6.78 -51.93 -0.35 1.76 16 13 C -0.10 -1.25 5.71 -27.01 -0.15 -1.40 16 14 C -0.11 -1.60 5.59 -26.55 -0.15 -1.75 16 15 C -0.12 -1.82 5.51 -26.54 -0.15 -1.97 16 16 C 0.19 3.43 3.00 -68.28 -0.21 3.23 16 17 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 18 N -0.72 -16.42 3.92 -53.77 -0.21 -16.63 16 19 C -0.24 -6.26 8.11 -15.06 -0.12 -6.38 16 20 H 0.07 1.84 7.61 -52.49 -0.40 1.44 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 23 Si 0.90 22.69 29.55 -169.99 -5.02 17.67 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 C -0.12 -1.96 2.13 -90.36 -0.19 -2.15 16 28 H 0.06 0.92 7.93 -51.93 -0.41 0.50 16 29 C 0.12 2.28 6.57 -3.42 -0.02 2.25 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.10 1.43 6.47 -51.93 -0.34 1.09 16 33 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 35 H 0.16 1.91 4.70 -52.49 -0.25 1.66 16 36 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 37 H 0.09 1.21 5.34 -51.93 -0.28 0.93 16 38 H 0.06 0.67 7.99 -51.93 -0.41 0.25 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.10 7.03 -51.93 -0.37 0.73 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.39 9.44 6.10 -40.82 -0.25 9.19 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.10 2.34 5.82 -51.93 -0.30 2.04 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -32.07 358.71 -9.45 -41.51 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.13 Total: 11.41 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.33 Total: -3.02 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.45 Total: -60.89 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.07 -9.45 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992624056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.659 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds