Wall clock time and date at job start Tue Mar 31 2020 11:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35528 * 125.67902 * 2 1 4 4 C 1.35452 * 108.87242 * 180.02562 * 3 2 1 5 5 C 1.39840 * 107.86463 * 359.74187 * 4 3 2 6 6 C 1.37651 * 125.67485 * 180.02562 * 2 1 3 7 7 C 1.46677 * 126.23614 * 359.97438 * 6 2 1 8 8 O 1.21699 * 119.99842 * 8.47283 * 7 6 2 9 9 N 1.34777 * 120.00037 * 188.46838 * 7 6 2 10 10 C 1.48650 * 125.78395 * 358.87456 * 9 7 6 11 11 C 1.53059 * 103.44427 * 155.61534 * 10 9 7 12 12 H 1.08999 * 110.55497 * 284.33950 * 11 10 9 13 13 C 1.51615 * 116.68149 * 155.89354 * 11 10 9 14 14 C 1.53819 * 107.02253 * 183.73562 * 13 11 10 15 15 C 1.52528 * 111.69999 * 57.54007 * 14 13 11 16 16 C 1.53835 * 111.65989 * 305.95619 * 15 14 13 17 17 H 1.09002 * 109.94137 * 176.58702 * 16 15 14 18 18 N 1.46511 * 109.93764 * 297.81379 * 16 15 14 19 19 C 1.36939 * 119.99910 * 207.58389 * 18 16 15 20 20 H 1.07996 * 119.99800 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99685 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99805 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46670 * 90.00117 * 23 21 19 25 25 H 1.48498 * 109.47084 * 210.00135 * 23 21 19 26 26 H 1.48498 * 109.47181 * 329.99838 * 23 21 19 27 27 C 1.51436 * 107.04859 * 57.19921 * 16 15 14 28 28 H 1.08999 * 110.22158 * 54.38044 * 27 16 15 29 29 C 1.48244 * 125.78187 * 178.86995 * 9 7 6 30 30 H 1.08992 * 109.47557 * 264.75519 * 1 2 3 31 31 H 1.08999 * 109.46619 * 24.75502 * 1 2 3 32 32 H 1.08998 * 109.47221 * 144.75118 * 1 2 3 33 33 H 1.08000 * 125.56247 * 0.04214 * 3 2 1 34 34 H 1.08005 * 126.06750 * 180.02562 * 4 3 2 35 35 H 1.07997 * 126.46180 * 180.26417 * 5 4 3 36 36 H 1.08999 * 110.63106 * 274.10405 * 10 9 7 37 37 H 1.09002 * 110.62795 * 37.12900 * 10 9 7 38 38 H 1.09002 * 109.94475 * 303.11497 * 13 11 10 39 39 H 1.08998 * 109.94643 * 64.27675 * 13 11 10 40 40 H 1.09002 * 109.03258 * 178.11441 * 14 13 11 41 41 H 1.08997 * 109.03731 * 297.03907 * 14 13 11 42 42 H 1.08999 * 109.04128 * 66.51392 * 15 14 13 43 43 H 1.08993 * 109.04291 * 185.46388 * 15 14 13 44 44 H 0.96991 * 119.99766 * 27.58604 * 18 16 15 45 45 H 0.96999 * 119.99744 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.17125 * 295.91640 * 29 9 7 47 47 H 1.08999 * 110.17269 * 57.64962 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7092 -0.0006 5 6 3.5780 -0.6889 0.0050 6 6 2.2678 -1.1182 -0.0005 7 6 1.8124 -2.5125 -0.0006 8 8 0.6325 -2.7672 -0.1555 9 7 2.7006 -3.5115 0.1708 10 6 4.1678 -3.3496 0.3465 11 6 4.5791 -4.6202 1.0943 12 1 4.2878 -4.5584 2.1428 13 6 6.0235 -5.0577 0.9500 14 6 6.1676 -6.3910 1.7033 15 6 5.2045 -7.4468 1.1703 16 6 3.7508 -6.9435 1.1752 17 1 3.0958 -7.6948 0.7340 18 7 3.3272 -6.6533 2.5474 19 6 2.0042 -6.7439 2.8891 20 1 1.2733 -7.0296 2.1473 21 6 1.6029 -6.4684 4.1891 22 7 2.4938 -6.1197 5.0930 23 14 -0.2017 -6.5926 4.6555 24 1 -0.4991 -7.9714 5.1201 25 1 -0.4989 -5.6282 5.7449 26 1 -1.0417 -6.2769 3.4723 27 6 3.7166 -5.6772 0.3454 28 1 4.1346 -5.8636 -0.6439 29 6 2.3800 -4.9582 0.2161 30 1 -0.3634 -0.0939 1.0233 31 1 -0.3632 0.9332 -0.4303 32 1 -0.3633 -0.8392 -0.5931 33 1 1.9082 2.1235 0.0006 34 1 4.4133 1.3611 -0.0003 35 1 4.4583 -1.3145 0.0101 36 1 4.6668 -3.2950 -0.6211 37 1 4.3877 -2.4645 0.9435 38 1 6.2662 -5.1977 -0.1035 39 1 6.6842 -4.3090 1.3871 40 1 7.1896 -6.7534 1.5921 41 1 5.9625 -6.2257 2.7609 42 1 5.4883 -7.7043 0.1499 43 1 5.2733 -8.3381 1.7939 44 1 3.9838 -6.3971 3.2136 45 1 2.2132 -5.9269 6.0013 46 1 1.7506 -5.1768 1.0788 47 1 1.8766 -5.2606 -0.7022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992624056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:24 Heat of formation + Delta-G solvation = 22.401588 kcal Electronic energy + Delta-G solvation = -28038.615089 eV Core-core repulsion = 24414.959526 eV Total energy + Delta-G solvation = -3623.655563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.41429 -41.26627 -39.46130 -36.94062 -35.37619 -33.86401 -33.08741 -31.98710 -30.82514 -29.79648 -28.23818 -27.36585 -26.20414 -25.21526 -22.96778 -22.34102 -21.73128 -21.34625 -20.19576 -20.08449 -19.20050 -18.12279 -17.37192 -16.88907 -16.59531 -16.35508 -16.03588 -15.88080 -15.61401 -15.26654 -15.07938 -14.72508 -14.35051 -14.19311 -14.09410 -13.72593 -13.61750 -13.33287 -13.26515 -13.15447 -12.98716 -12.96054 -12.86683 -12.61181 -12.54403 -12.20548 -12.17333 -11.81932 -11.58725 -11.29797 -11.10585 -11.02325 -10.86624 -10.54159 -9.76563 -9.65378 -9.14087 -8.94429 -7.94284 -5.16895 0.48850 1.38299 1.40578 1.47028 1.57800 1.85680 2.28679 2.36186 2.53163 3.38730 3.40900 3.63406 3.85358 3.89053 3.95675 4.15342 4.19646 4.29964 4.31013 4.37116 4.39463 4.43812 4.53150 4.56910 4.65061 4.67760 4.71223 4.72685 4.76948 4.89556 4.97519 5.11792 5.13409 5.14250 5.23028 5.24492 5.30587 5.42437 5.49260 5.50674 5.59225 5.60366 5.79435 5.86740 5.99235 6.29963 6.34336 6.51665 7.08124 7.37668 8.16928 8.38934 9.29011 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.005211 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.991749 B = 5371.692820 C = 7006.166653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.424 5.424 3 C 0.023 3.977 4 C -0.219 4.219 5 C -0.148 4.148 6 C -0.089 4.089 7 C 0.583 3.417 8 O -0.604 6.604 9 N -0.604 5.604 10 C 0.101 3.899 11 C -0.097 4.097 12 H 0.057 0.943 13 C -0.088 4.088 14 C -0.113 4.113 15 C -0.113 4.113 16 C 0.178 3.822 17 H 0.043 0.957 18 N -0.721 5.721 19 C -0.216 4.216 20 H 0.066 0.934 21 C -0.070 4.070 22 N -0.963 5.963 23 Si 0.948 3.052 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.285 1.285 27 C -0.110 4.110 28 H 0.099 0.901 29 C 0.120 3.880 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.207 0.793 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.377 0.623 45 H 0.247 0.753 46 H 0.049 0.951 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 12.156 -14.127 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.098 5.098 3 C -0.113 4.113 4 C -0.242 4.242 5 C -0.175 4.175 6 C -0.201 4.201 7 C 0.375 3.625 8 O -0.488 6.488 9 N -0.335 5.335 10 C -0.020 4.020 11 C -0.117 4.117 12 H 0.075 0.925 13 C -0.125 4.125 14 C -0.150 4.150 15 C -0.151 4.151 16 C 0.069 3.931 17 H 0.061 0.939 18 N -0.361 5.361 19 C -0.349 4.349 20 H 0.084 0.916 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.779 3.221 24 H -0.210 1.210 25 H -0.227 1.227 26 H -0.211 1.211 27 C -0.132 4.132 28 H 0.117 0.883 29 C -0.002 4.002 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.189 0.811 35 H 0.190 0.810 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.053 0.947 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.210 0.790 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.802 11.976 -14.234 20.172 hybrid contribution -1.672 -0.276 1.204 2.079 sum 6.130 11.700 -13.029 18.554 Atomic orbital electron populations 1.22282 0.75802 1.05682 1.03662 1.44107 1.07414 1.05181 1.53075 1.22778 0.90647 0.92284 1.05558 1.21267 0.97147 0.94496 1.11272 1.22327 0.94560 0.96906 1.03675 1.19951 0.92043 0.86745 1.21396 1.17185 0.84352 0.84422 0.76532 1.90712 1.18176 1.85405 1.54555 1.48822 1.08988 1.05991 1.69690 1.22793 0.78307 0.99404 1.01456 1.22015 0.97256 0.93194 0.99220 0.92453 1.21266 0.92902 0.96483 1.01887 1.21447 0.99405 0.95216 0.98973 1.21726 0.93124 0.98122 1.02148 1.20184 0.95119 0.93248 0.84570 0.93891 1.42539 1.04801 1.81619 1.07169 1.19416 0.86259 1.35615 0.93560 0.91648 1.25225 0.99979 1.04216 0.96809 1.69759 1.33198 1.55716 1.02838 0.85504 0.82318 0.77146 0.77107 1.21010 1.22684 1.21051 1.22497 0.93107 0.97466 1.00097 0.88264 1.21652 0.99318 0.78954 1.00245 0.91469 0.85804 0.90745 0.77598 0.81068 0.81037 0.87922 0.88811 0.89071 0.90348 0.89895 0.94741 0.89238 0.93139 0.78992 0.94392 0.93266 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.59 10.54 127.77 1.35 2.94 16 2 N -0.42 -11.55 3.16 -534.32 -1.69 -13.24 16 3 C 0.02 0.45 11.37 83.48 0.95 1.40 16 4 C -0.22 -4.41 10.81 22.01 0.24 -4.17 16 5 C -0.15 -3.78 9.19 22.57 0.21 -3.57 16 6 C -0.09 -2.89 6.84 40.35 0.28 -2.61 16 7 C 0.58 23.26 7.82 86.45 0.68 23.94 16 8 O -0.60 -28.19 15.11 -4.34 -0.07 -28.26 16 9 N -0.60 -22.09 3.38 -817.59 -2.76 -24.86 16 10 C 0.10 2.74 4.87 85.98 0.42 3.16 16 11 C -0.10 -2.91 2.38 -10.32 -0.02 -2.93 16 12 H 0.06 2.32 6.78 -2.39 -0.02 2.31 16 13 C -0.09 -1.90 5.71 30.42 0.17 -1.72 16 14 C -0.11 -2.85 5.59 30.71 0.17 -2.68 16 15 C -0.11 -3.15 5.51 30.72 0.17 -2.99 16 16 C 0.18 6.45 3.00 44.76 0.13 6.59 16 17 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 18 N -0.72 -34.38 3.92 -324.02 -1.27 -35.65 16 19 C -0.22 -11.95 8.11 84.03 0.68 -11.27 16 20 H 0.07 3.61 7.61 -2.91 -0.02 3.59 16 21 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 22 N -0.96 -59.38 13.06 21.65 0.28 -59.10 16 23 Si 0.95 48.85 29.55 68.60 2.03 50.87 16 24 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 26 H -0.28 -14.61 7.11 99.48 0.71 -13.91 16 27 C -0.11 -3.52 2.13 -10.62 -0.02 -3.54 16 28 H 0.10 2.53 7.93 -2.39 -0.02 2.51 16 29 C 0.12 4.74 6.57 85.82 0.56 5.30 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.12 1.78 8.12 -2.39 -0.02 1.76 16 32 H 0.07 2.21 6.47 -2.39 -0.02 2.19 16 33 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.17 3.62 4.70 -2.91 -0.01 3.61 16 36 H 0.10 2.09 8.04 -2.39 -0.02 2.07 16 37 H 0.09 2.43 5.34 -2.39 -0.01 2.42 16 38 H 0.09 1.48 7.99 -2.39 -0.02 1.46 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.03 1.10 7.03 -2.39 -0.02 1.08 16 42 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.38 19.33 6.10 -92.71 -0.57 18.76 16 45 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 46 H 0.05 2.44 5.82 -2.39 -0.01 2.43 16 47 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -76.95 358.71 3.36 -73.59 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.41 Total: 32.43 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.43 Total: 4.21 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -5.44 Total: -132.85 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.07 Total: -28.26 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.87 kcal Total: -76.95 3.36 -73.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992624056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.994 kcal (2) G-P(sol) polarization free energy of solvation -76.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds