Wall clock time and date at job start Tue Mar 31 2020 11:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35534 * 125.67786 * 2 1 4 4 C 1.35452 * 108.87394 * 180.30799 * 3 2 1 5 5 C 1.39844 * 107.86094 * 359.73267 * 4 3 2 6 6 C 1.37654 * 125.67898 * 179.85077 * 2 1 3 7 7 C 1.46674 * 126.23217 * 359.95757 * 6 2 1 8 8 O 1.21699 * 120.00053 * 5.49073 * 7 6 2 9 9 N 1.34779 * 120.00123 * 185.48211 * 7 6 2 10 10 C 1.47176 * 125.64548 * 354.93554 * 9 7 6 11 11 C 1.55342 * 106.96089 * 180.92287 * 10 9 7 12 12 H 1.08999 * 112.90876 * 214.96412 * 11 10 9 13 13 C 1.53004 * 106.41769 * 91.60411 * 11 10 9 14 14 C 1.52593 * 111.05142 * 197.20903 * 13 11 10 15 15 C 1.51912 * 108.63986 * 62.02642 * 14 13 11 16 16 C 1.52819 * 108.82863 * 296.45232 * 15 14 13 17 17 H 1.08999 * 108.96717 * 297.63455 * 16 15 14 18 18 N 1.46498 * 109.02723 * 178.76730 * 16 15 14 19 19 C 1.36936 * 120.00617 * 82.75670 * 18 16 15 20 20 H 1.08002 * 119.99434 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00654 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99710 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00226 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47202 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47136 * 300.00368 * 23 21 19 26 26 H 1.48499 * 109.46971 * 60.00017 * 23 21 19 27 27 C 1.50734 * 111.74750 * 58.18306 * 16 15 14 28 28 H 1.08997 * 109.26906 * 186.93816 * 27 16 15 29 29 C 1.47282 * 125.95578 * 175.58902 * 9 7 6 30 30 H 1.09006 * 109.47096 * 274.59323 * 1 2 3 31 31 H 1.08997 * 109.47691 * 34.58763 * 1 2 3 32 32 H 1.09001 * 109.47130 * 154.59452 * 1 2 3 33 33 H 1.08001 * 125.56707 * 0.02562 * 3 2 1 34 34 H 1.07997 * 126.07073 * 179.76728 * 4 3 2 35 35 H 1.07999 * 126.45197 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.96205 * 61.54618 * 10 9 7 37 37 H 1.08995 * 109.96101 * 300.30126 * 10 9 7 38 38 H 1.09001 * 109.15822 * 317.61127 * 13 11 10 39 39 H 1.08992 * 109.16122 * 76.85766 * 13 11 10 40 40 H 1.09011 * 109.67409 * 182.08414 * 14 13 11 41 41 H 1.08997 * 109.68023 * 302.61786 * 14 13 11 42 42 H 1.09004 * 109.97220 * 176.21221 * 15 14 13 43 43 H 1.08999 * 108.76459 * 55.97379 * 15 14 13 44 44 H 0.97002 * 120.00072 * 262.76685 * 18 16 15 45 45 H 0.96995 * 119.99881 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.84820 * 84.82040 * 29 9 7 47 47 H 1.09001 * 109.92503 * 322.28006 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0069 5 6 3.5779 -0.6888 -0.0052 6 6 2.2678 -1.1182 0.0029 7 6 1.8124 -2.5124 0.0074 8 8 0.6261 -2.7654 -0.0919 9 7 2.7076 -3.5134 0.1214 10 6 4.1709 -3.3571 0.1428 11 6 4.7771 -4.7821 0.2648 12 1 5.6870 -4.8063 0.8645 13 6 5.0170 -5.2738 -1.1642 14 6 5.2061 -6.7875 -1.1985 15 6 3.9330 -7.4474 -0.6972 16 6 3.7140 -7.0514 0.7624 17 1 4.5460 -7.4246 1.3595 18 7 2.4714 -7.6618 1.2416 19 6 2.4701 -8.9593 1.6793 20 1 3.3854 -9.5326 1.6715 21 6 1.2926 -9.5378 2.1328 22 7 0.1771 -8.8392 2.1417 23 14 1.2912 -11.3076 2.7304 24 1 -0.0801 -11.6847 3.1578 25 1 1.7295 -12.2023 1.6292 26 1 2.2229 -11.4430 3.8787 27 6 3.6224 -5.5559 0.9277 28 1 3.5907 -5.3127 1.9897 29 6 2.3917 -4.9477 0.2320 30 1 -0.3633 0.0823 1.0244 31 1 -0.3634 0.8460 -0.5833 32 1 -0.3633 -0.9283 -0.4409 33 1 1.9082 2.1236 0.0004 34 1 4.4131 1.3612 -0.0122 35 1 4.4583 -1.3144 -0.0098 36 1 4.4680 -2.7518 0.9992 37 1 4.5084 -2.8868 -0.7807 38 1 4.1606 -5.0061 -1.7830 39 1 5.9104 -4.7932 -1.5626 40 1 5.4118 -7.1086 -2.2198 41 1 6.0366 -7.0685 -0.5508 42 1 4.0196 -8.5312 -0.7756 43 1 3.0960 -7.0996 -1.3026 44 1 1.6494 -7.1468 1.2488 45 1 -0.6458 -9.2436 2.4583 46 1 2.2521 -5.3913 -0.7538 47 1 1.5002 -5.0856 0.8437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992624058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:30 Heat of formation + Delta-G solvation = 34.684885 kcal Electronic energy + Delta-G solvation = -27478.773613 eV Core-core repulsion = 23855.650693 eV Total energy + Delta-G solvation = -3623.122919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53283 -40.28992 -38.18675 -35.59996 -33.89919 -32.95579 -31.57924 -30.90788 -29.60449 -28.50729 -26.84284 -26.33097 -24.87360 -23.57713 -21.72856 -21.63911 -20.90874 -20.44291 -19.24278 -18.37050 -17.40308 -16.79343 -16.22409 -15.99549 -15.51933 -15.12415 -14.82940 -14.45090 -14.06156 -13.90725 -13.64371 -13.48294 -13.39802 -13.27399 -12.87352 -12.73401 -12.62556 -12.39657 -12.30468 -12.08734 -11.80758 -11.64619 -11.12772 -11.01716 -10.97355 -10.81522 -10.68705 -10.21985 -10.16262 -9.94640 -9.79996 -9.65372 -9.50669 -8.87255 -8.83817 -8.54931 -8.25717 -6.93657 -5.73147 -3.02644 1.45298 2.51831 2.64819 3.28552 3.41498 3.45677 3.50072 3.51366 4.44699 4.54151 4.60951 4.71865 4.84107 4.86656 4.92993 5.11149 5.26946 5.28552 5.32191 5.38698 5.43519 5.45921 5.55635 5.60407 5.69278 5.77619 5.80783 5.88081 5.93515 5.93851 6.03443 6.06159 6.09821 6.28811 6.29645 6.37464 6.43374 6.51835 6.63898 6.70578 6.77073 6.88114 6.93548 7.09642 7.14029 7.61588 7.72096 8.24761 8.44776 9.55786 10.12749 10.47021 11.49162 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.003482 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.914830 B = 8039.477503 C = 9258.278537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.412 5.412 3 C 0.008 3.992 4 C -0.211 4.211 5 C -0.156 4.156 6 C -0.042 4.042 7 C 0.598 3.402 8 O -0.549 6.549 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.092 4.092 12 H 0.098 0.902 13 C -0.112 4.112 14 C -0.117 4.117 15 C -0.136 4.136 16 C 0.193 3.807 17 H 0.050 0.950 18 N -0.726 5.726 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.292 1.292 25 H -0.286 1.286 26 H -0.286 1.286 27 C -0.094 4.094 28 H 0.078 0.922 29 C 0.120 3.880 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.166 0.834 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.074 0.926 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.747 19.349 -6.340 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.084 5.084 3 C -0.127 4.127 4 C -0.235 4.235 5 C -0.182 4.182 6 C -0.156 4.156 7 C 0.388 3.612 8 O -0.429 6.429 9 N -0.334 5.334 10 C -0.027 4.027 11 C -0.111 4.111 12 H 0.116 0.884 13 C -0.149 4.149 14 C -0.155 4.155 15 C -0.177 4.177 16 C 0.082 3.918 17 H 0.068 0.932 18 N -0.368 5.368 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.213 1.213 26 H -0.213 1.213 27 C -0.114 4.114 28 H 0.096 0.904 29 C -0.002 4.002 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.184 0.816 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.636 19.066 -6.316 21.862 hybrid contribution -0.384 -0.661 0.350 0.840 sum 8.252 18.405 -5.966 21.034 Atomic orbital electron populations 1.22355 0.76139 1.05879 1.03710 1.43863 1.06848 1.04953 1.52770 1.22001 0.90820 0.91437 1.08423 1.20843 0.95900 0.95138 1.11592 1.21964 0.95174 0.95550 1.05501 1.20043 0.90490 0.87506 1.17543 1.16580 0.84787 0.82841 0.76973 1.90786 1.15971 1.84418 1.51718 1.48067 1.06475 1.07121 1.71770 1.22790 0.80275 0.98164 1.01481 1.22303 0.98495 0.92954 0.97364 0.88424 1.21564 1.01233 0.96682 0.95443 1.21281 0.99179 0.94627 1.00455 1.22056 0.95968 1.00575 0.99072 1.19541 0.91201 0.88245 0.92786 0.93246 1.42513 1.05712 1.12379 1.76152 1.19172 0.94496 0.88786 1.34630 0.91219 1.24740 0.95693 0.98171 1.02253 1.69655 0.99099 1.36228 1.52967 0.86296 0.76489 0.84958 0.78590 1.21773 1.21325 1.21324 1.21765 0.93059 0.96659 0.99925 0.90363 1.22123 0.99196 0.77484 1.01378 0.90677 0.90126 0.87202 0.81642 0.84137 0.82711 0.90908 0.90751 0.92023 0.92350 0.92684 0.92243 0.91742 0.92667 0.78173 0.93457 0.90765 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 10.76 59.84 0.64 1.26 16 2 N -0.41 -5.02 3.16 -120.24 -0.38 -5.40 16 3 C 0.01 0.08 11.38 -16.91 -0.19 -0.11 16 4 C -0.21 -2.11 10.81 -39.98 -0.43 -2.54 16 5 C -0.16 -1.81 9.33 -39.12 -0.36 -2.17 16 6 C -0.04 -0.59 6.86 -81.98 -0.56 -1.15 16 7 C 0.60 9.97 7.81 -12.85 -0.10 9.87 16 8 O -0.55 -10.83 14.88 5.19 0.08 -10.75 16 9 N -0.60 -9.13 3.33 -172.04 -0.57 -9.71 16 10 C 0.10 1.09 4.27 -2.43 -0.01 1.08 16 11 C -0.09 -1.08 3.61 -88.85 -0.32 -1.40 16 12 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.11 -1.28 4.61 -26.94 -0.12 -1.41 16 14 C -0.12 -1.52 5.88 -27.49 -0.16 -1.68 16 15 C -0.14 -2.32 5.24 -27.38 -0.14 -2.47 16 16 C 0.19 3.61 2.48 -69.16 -0.17 3.44 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 N -0.73 -17.73 5.03 -54.63 -0.27 -18.01 16 19 C -0.24 -6.54 9.89 -15.06 -0.15 -6.69 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.09 -1.49 2.54 -90.76 -0.23 -1.72 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 C 0.12 2.06 5.01 -3.15 -0.02 2.04 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 1.41 5.98 -51.93 -0.31 1.09 16 33 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.16 1.49 4.42 -52.49 -0.23 1.26 16 36 H 0.07 0.75 6.88 -51.93 -0.36 0.39 16 37 H 0.07 0.74 6.58 -51.93 -0.34 0.40 16 38 H 0.06 0.78 7.08 -51.93 -0.37 0.41 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 0.99 6.79 -51.93 -0.35 0.64 16 44 H 0.38 10.11 6.44 -40.82 -0.26 9.85 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.07 1.33 6.07 -51.93 -0.32 1.01 16 47 H 0.08 1.70 7.44 -51.93 -0.39 1.32 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -33.06 359.46 -9.58 -42.65 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.12 Total: 10.12 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.43 Total: -4.10 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.50 Total: -60.72 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.06 -9.58 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992624058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.332 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds